Wall clock time and date at job start Sat Apr 11 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46833 * 2 1 4 4 C 1.46501 * 119.99976 * 269.99877 * 3 2 1 5 5 C 1.50704 * 109.47305 * 270.00011 * 4 3 2 6 6 H 1.07998 * 119.99803 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99859 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00405 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46868 * 120.00563 * 9 7 5 12 12 H 1.48504 * 109.46864 * 240.00367 * 9 7 5 13 13 C 1.34780 * 119.99711 * 90.00464 * 3 2 1 14 14 O 1.21277 * 119.99449 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99930 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47052 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00315 * 179.97438 * 16 15 13 18 18 H 1.09008 * 112.84830 * 23.80999 * 17 16 15 19 19 C 1.53784 * 113.61407 * 154.99971 * 17 16 15 20 20 C 1.53778 * 87.07888 * 140.07275 * 19 17 16 21 21 H 1.09004 * 113.61309 * 219.93789 * 20 19 17 22 22 N 1.46500 * 113.61879 * 89.11422 * 20 19 17 23 23 C 1.34777 * 119.99842 * 156.52628 * 22 20 19 24 24 O 1.21287 * 120.00078 * 0.02562 * 23 22 20 25 25 C 1.50703 * 119.99966 * 180.02562 * 23 22 20 26 26 C 1.50696 * 109.47049 * 180.02562 * 25 23 22 27 27 N 1.34777 * 120.00076 * 180.02562 * 26 25 23 28 28 O 1.21281 * 120.00074 * 359.97438 * 26 25 23 29 29 C 1.53780 * 87.17264 * 334.52581 * 20 19 17 30 30 H 1.08999 * 109.46766 * 60.00016 * 1 2 3 31 31 H 1.08999 * 109.46615 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46856 * 299.99399 * 1 2 3 33 33 H 1.09010 * 109.47018 * 240.00259 * 2 1 3 34 34 H 1.08994 * 109.47164 * 120.00256 * 2 1 3 35 35 H 1.08996 * 109.47178 * 30.00770 * 4 3 2 36 36 H 1.09006 * 109.46735 * 150.00222 * 4 3 2 37 37 H 0.96993 * 120.00030 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.46948 * 60.00408 * 15 13 3 39 39 H 1.08995 * 109.47197 * 299.99743 * 15 13 3 40 40 H 1.00901 * 110.99721 * 56.04163 * 16 15 13 41 41 H 1.08992 * 113.61336 * 25.52020 * 19 17 16 42 42 H 1.09005 * 113.68991 * 254.62659 * 19 17 16 43 43 H 0.96997 * 119.99782 * 336.53621 * 22 20 19 44 44 H 1.09002 * 109.46546 * 60.00118 * 25 23 22 45 45 H 1.09001 * 109.46944 * 299.99990 * 25 23 22 46 46 H 0.97001 * 120.00485 * 180.02562 * 27 26 25 47 47 H 0.97005 * 119.99790 * 359.72082 * 27 26 25 48 48 H 1.08999 * 113.61535 * 140.03165 * 29 20 19 49 49 H 1.08999 * 113.61594 * 270.93000 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2304 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9131 2.0957 -3.4176 10 1 6.6005 1.2398 -2.4176 11 1 5.9201 1.4166 -4.7381 12 1 6.6208 3.3968 -3.5263 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3103 2.2059 3.5889 17 6 2.0759 1.5460 4.8802 18 1 2.1206 0.4589 4.8143 19 6 2.9141 2.1282 6.0306 20 6 1.6661 1.9700 6.9151 21 1 1.5088 2.8024 7.6011 22 7 1.5754 0.6648 7.5741 23 6 0.8510 0.5285 8.7024 24 8 0.2738 1.4863 9.1720 25 6 0.7581 -0.8141 9.3807 26 6 -0.1047 -0.6969 10.6107 27 7 -0.3301 -1.7794 11.3813 28 8 -0.5954 0.3717 10.9076 29 6 0.8335 2.0684 5.6260 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.5817 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1383 37 1 3.6750 3.5163 -4.4440 38 1 2.6213 0.4186 2.5301 39 1 0.9434 1.0124 2.5299 40 1 1.7859 3.0653 3.5219 41 1 3.2096 3.1656 5.8739 42 1 3.7462 1.4919 6.3319 43 1 2.0368 -0.1013 7.1985 44 1 1.7560 -1.1464 9.6667 45 1 0.3166 -1.5376 8.6953 46 1 -0.8858 -1.7041 12.1729 47 1 0.0597 -2.6348 11.1420 48 1 -0.0136 1.3829 5.6000 49 1 0.5612 3.0895 5.3589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690270553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:03 Heat of formation + Delta-G solvation = -81.561706 kcal Electronic energy + Delta-G solvation = -29081.485344 eV Core-core repulsion = 24851.445961 eV Total energy + Delta-G solvation = -4230.039383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80991 -39.77721 -39.01140 -38.11558 -35.35484 -34.59912 -34.08489 -32.96157 -32.57921 -30.55525 -30.09726 -27.91640 -25.93873 -25.90044 -23.67715 -23.01797 -22.24971 -22.09682 -20.62316 -19.79362 -18.31192 -18.04913 -17.67257 -16.72728 -16.39331 -16.33659 -16.24643 -16.16849 -15.90148 -15.06541 -14.85006 -14.82685 -14.45283 -14.21936 -13.92426 -13.80373 -13.56110 -13.39235 -12.98924 -12.83030 -12.65355 -12.54688 -12.38817 -12.05728 -11.87522 -11.67826 -11.60651 -11.20112 -10.99466 -10.88333 -10.73374 -10.63163 -10.57666 -10.51547 -10.11729 -10.10803 -9.81490 -9.60151 -9.32646 -8.88586 -8.42666 -8.28479 -7.64401 -6.03190 -4.07630 2.17747 2.38673 2.51500 3.23438 3.30439 3.37663 3.40533 3.46498 3.75358 4.09237 4.21069 4.35042 4.43257 4.46450 4.50274 4.64359 4.69977 4.76179 4.80677 5.08512 5.25174 5.31467 5.35602 5.40722 5.54226 5.55750 5.61495 5.62335 5.70289 5.74581 5.78402 5.87183 5.99617 6.20668 6.29159 6.32368 6.44729 6.82318 6.91071 7.13694 7.15232 7.40012 7.46081 7.57166 7.82209 7.93745 7.99151 8.25166 8.44478 8.92550 9.13095 9.57613 11.04891 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.001743 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.085485 B =16059.346848 C =16419.184887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.529 6.529 15 C 0.041 3.959 16 N -0.660 5.660 17 C 0.069 3.931 18 H 0.094 0.906 19 C -0.131 4.131 20 C 0.121 3.879 21 H 0.104 0.896 22 N -0.715 5.715 23 C 0.512 3.488 24 O -0.493 6.493 25 C -0.168 4.168 26 C 0.514 3.486 27 N -0.861 5.861 28 O -0.496 6.496 29 C -0.180 4.180 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.354 0.646 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.399 0.601 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.403 0.597 47 H 0.399 0.601 48 H 0.069 0.931 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -15.972 25.220 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.405 6.405 15 C -0.091 4.091 16 N -0.292 5.292 17 C -0.042 4.042 18 H 0.112 0.888 19 C -0.170 4.170 20 C 0.015 3.985 21 H 0.122 0.878 22 N -0.368 5.368 23 C 0.296 3.704 24 O -0.365 6.365 25 C -0.211 4.211 26 C 0.296 3.704 27 N -0.427 5.427 28 O -0.368 6.368 29 C -0.221 4.221 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.175 0.825 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.234 0.766 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.234 0.766 47 H 0.227 0.773 48 H 0.088 0.912 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.099 -13.852 25.383 29.553 hybrid contribution 0.219 -1.273 -0.510 1.389 sum -5.880 -15.125 24.873 29.698 Atomic orbital electron populations 1.22226 0.96927 1.01317 1.02257 1.21392 0.93363 0.84389 1.02573 1.48257 1.64008 1.13193 1.07742 1.19255 0.96242 0.93621 0.78120 1.21481 0.96954 1.31749 1.06138 0.92410 1.24940 0.97840 0.94960 0.96432 1.69941 1.35583 1.33565 1.14347 0.86444 0.84692 0.78062 0.78225 1.19809 1.21040 1.20879 1.20211 0.78870 0.87150 0.84912 1.90677 1.44849 1.18012 1.86934 1.21938 0.99799 0.96711 0.90642 1.60056 1.62537 1.06895 0.99670 1.23153 0.94325 0.98167 0.88580 0.88795 1.23455 0.96105 1.03523 0.93958 1.21726 0.97283 0.86093 0.93378 0.87834 1.45668 1.52624 1.11912 1.26626 1.19953 0.79543 0.90137 0.80787 1.90884 1.42745 1.39861 1.62982 1.21597 1.03283 0.98569 0.97622 1.19988 0.81593 0.84265 0.84515 1.43867 1.56139 1.12057 1.30598 1.90933 1.48421 1.26783 1.70655 1.24236 0.98253 1.02666 0.96930 0.92002 0.92244 0.93256 0.89960 0.91921 0.95104 0.93954 0.92814 0.88860 0.93018 0.82531 0.87963 0.90755 0.76645 0.85899 0.85936 0.76582 0.77254 0.91224 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.33 2.46 -175.05 -0.43 -12.76 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.52 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.50 10.19 7.71 -10.98 -0.08 10.10 16 14 O -0.53 -13.21 15.78 5.56 0.09 -13.12 16 15 C 0.04 0.58 4.56 -4.98 -0.02 0.56 16 16 N -0.66 -8.81 6.25 -106.99 -0.67 -9.48 16 17 C 0.07 0.64 4.07 -66.76 -0.27 0.37 16 18 H 0.09 0.73 7.87 -51.92 -0.41 0.32 16 19 C -0.13 -1.12 7.62 -25.92 -0.20 -1.32 16 20 C 0.12 1.05 4.29 -67.12 -0.29 0.76 16 21 H 0.10 1.10 7.50 -51.93 -0.39 0.71 16 22 N -0.72 -4.82 5.26 -53.01 -0.28 -5.10 16 23 C 0.51 4.62 7.82 -10.98 -0.09 4.53 16 24 O -0.49 -7.30 13.80 -18.97 -0.26 -7.56 16 25 C -0.17 -0.72 6.19 -29.04 -0.18 -0.90 16 26 C 0.51 3.93 8.09 -10.99 -0.09 3.84 16 27 N -0.86 -2.68 8.87 31.22 0.28 -2.40 16 28 O -0.50 -6.94 15.02 -18.96 -0.28 -7.23 16 29 C -0.18 -1.63 7.51 -25.78 -0.19 -1.82 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 33 H 0.08 1.32 8.07 -51.92 -0.42 0.90 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.18 7.39 -51.93 -0.38 0.80 16 39 H 0.05 0.62 7.18 -51.93 -0.37 0.25 16 40 H 0.35 4.99 7.90 -39.29 -0.31 4.68 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.40 1.44 8.70 -40.82 -0.36 1.09 16 44 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.12 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.40 1.16 8.93 -40.82 -0.36 0.80 16 47 H 0.40 -0.20 8.83 -40.82 -0.36 -0.56 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -41.17 408.11 -8.99 -50.16 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.79 Total: 1.56 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.50 Total: 8.78 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.36 Total: -55.64 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.46 Total: -27.91 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -41.17 -8.99 -50.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690270553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.400 kcal (2) G-P(sol) polarization free energy of solvation -41.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds