Wall clock time and date at job start Sat Apr 11 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46833 * 2 1 4 4 C 1.46501 * 119.99976 * 269.99877 * 3 2 1 5 5 C 1.50704 * 109.47305 * 270.00011 * 4 3 2 6 6 H 1.07998 * 119.99803 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99859 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00405 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46868 * 120.00563 * 9 7 5 12 12 H 1.48504 * 109.46864 * 240.00367 * 9 7 5 13 13 C 1.34780 * 119.99711 * 90.00464 * 3 2 1 14 14 O 1.21277 * 119.99449 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99930 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47052 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00315 * 179.97438 * 16 15 13 18 18 H 1.09008 * 112.84830 * 23.80999 * 17 16 15 19 19 C 1.53784 * 113.61407 * 154.99971 * 17 16 15 20 20 C 1.53778 * 87.07888 * 140.07275 * 19 17 16 21 21 H 1.09004 * 113.61309 * 219.93789 * 20 19 17 22 22 N 1.46500 * 113.61879 * 89.11422 * 20 19 17 23 23 C 1.34777 * 119.99842 * 156.52628 * 22 20 19 24 24 O 1.21287 * 120.00078 * 0.02562 * 23 22 20 25 25 C 1.50703 * 119.99966 * 180.02562 * 23 22 20 26 26 C 1.50696 * 109.47049 * 180.02562 * 25 23 22 27 27 N 1.34777 * 120.00076 * 180.02562 * 26 25 23 28 28 O 1.21281 * 120.00074 * 359.97438 * 26 25 23 29 29 C 1.53780 * 87.17264 * 334.52581 * 20 19 17 30 30 H 1.08999 * 109.46766 * 60.00016 * 1 2 3 31 31 H 1.08999 * 109.46615 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46856 * 299.99399 * 1 2 3 33 33 H 1.09010 * 109.47018 * 240.00259 * 2 1 3 34 34 H 1.08994 * 109.47164 * 120.00256 * 2 1 3 35 35 H 1.08996 * 109.47178 * 30.00770 * 4 3 2 36 36 H 1.09006 * 109.46735 * 150.00222 * 4 3 2 37 37 H 0.96993 * 120.00030 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.46948 * 60.00408 * 15 13 3 39 39 H 1.08995 * 109.47197 * 299.99743 * 15 13 3 40 40 H 1.00901 * 110.99721 * 56.04163 * 16 15 13 41 41 H 1.08992 * 113.61336 * 25.52020 * 19 17 16 42 42 H 1.09005 * 113.68991 * 254.62659 * 19 17 16 43 43 H 0.96997 * 119.99782 * 336.53621 * 22 20 19 44 44 H 1.09002 * 109.46546 * 60.00118 * 25 23 22 45 45 H 1.09001 * 109.46944 * 299.99990 * 25 23 22 46 46 H 0.97001 * 120.00485 * 180.02562 * 27 26 25 47 47 H 0.97005 * 119.99790 * 359.72082 * 27 26 25 48 48 H 1.08999 * 113.61535 * 140.03165 * 29 20 19 49 49 H 1.08999 * 113.61594 * 270.93000 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2304 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9131 2.0957 -3.4176 10 1 6.6005 1.2398 -2.4176 11 1 5.9201 1.4166 -4.7381 12 1 6.6208 3.3968 -3.5263 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3103 2.2059 3.5889 17 6 2.0759 1.5460 4.8802 18 1 2.1206 0.4589 4.8143 19 6 2.9141 2.1282 6.0306 20 6 1.6661 1.9700 6.9151 21 1 1.5088 2.8024 7.6011 22 7 1.5754 0.6648 7.5741 23 6 0.8510 0.5285 8.7024 24 8 0.2738 1.4863 9.1720 25 6 0.7581 -0.8141 9.3807 26 6 -0.1047 -0.6969 10.6107 27 7 -0.3301 -1.7794 11.3813 28 8 -0.5954 0.3717 10.9076 29 6 0.8335 2.0684 5.6260 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.5817 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1383 37 1 3.6750 3.5163 -4.4440 38 1 2.6213 0.4186 2.5301 39 1 0.9434 1.0124 2.5299 40 1 1.7859 3.0653 3.5219 41 1 3.2096 3.1656 5.8739 42 1 3.7462 1.4919 6.3319 43 1 2.0368 -0.1013 7.1985 44 1 1.7560 -1.1464 9.6667 45 1 0.3166 -1.5376 8.6953 46 1 -0.8858 -1.7041 12.1729 47 1 0.0597 -2.6348 11.1420 48 1 -0.0136 1.3829 5.6000 49 1 0.5612 3.0895 5.3589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690270553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:03 Heat of formation + Delta-G solvation = -117.199014 kcal Electronic energy + Delta-G solvation = -29083.030694 eV Core-core repulsion = 24851.445961 eV Total energy + Delta-G solvation = -4231.584733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47893 -40.76149 -40.20215 -38.89685 -36.93457 -35.58538 -34.86490 -34.60573 -33.56303 -31.58957 -31.00341 -29.54370 -27.40145 -26.62047 -24.93268 -24.31021 -23.61359 -22.80153 -21.15898 -20.59545 -19.75423 -18.61567 -18.55809 -18.15021 -17.85982 -17.42185 -16.91649 -16.85774 -16.72732 -16.60951 -16.11607 -15.87296 -15.61752 -15.25118 -14.83125 -14.67749 -14.52370 -14.40503 -14.29290 -14.10542 -13.60908 -13.55050 -13.44368 -13.26545 -13.08263 -12.98858 -12.83804 -12.69985 -12.54984 -12.46947 -12.15648 -11.87434 -11.69488 -11.65917 -11.35006 -11.21977 -10.63942 -10.54883 -10.53587 -10.49280 -10.00225 -9.41770 -9.22585 -8.20978 -6.35795 1.36784 1.39712 1.51382 1.67104 1.78673 1.90508 2.00832 2.29752 2.44273 2.83088 3.08362 3.24335 3.59661 3.63975 3.71449 3.79780 3.98922 4.08447 4.15395 4.21563 4.37005 4.45848 4.48412 4.50385 4.51058 4.62475 4.68027 4.82925 4.88891 4.94861 5.01310 5.02541 5.06722 5.07526 5.16626 5.24336 5.40964 5.60279 5.62565 5.88463 5.98563 6.08697 6.12311 6.34454 6.55966 6.66070 6.73308 6.87630 7.30887 7.37022 7.52385 7.56564 8.86019 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.001743 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.085485 B =16059.346848 C =16419.184887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.060 3.940 16 N -0.681 5.681 17 C 0.076 3.924 18 H 0.125 0.875 19 C -0.125 4.125 20 C 0.124 3.876 21 H 0.076 0.924 22 N -0.697 5.697 23 C 0.503 3.497 24 O -0.561 6.561 25 C -0.154 4.154 26 C 0.505 3.495 27 N -0.838 5.838 28 O -0.573 6.573 29 C -0.177 4.177 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.020 0.980 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.345 0.655 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.420 0.580 44 H 0.166 0.834 45 H 0.166 0.834 46 H 0.405 0.595 47 H 0.421 0.579 48 H 0.073 0.927 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -20.532 26.260 33.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.072 4.072 16 N -0.312 5.312 17 C -0.034 4.034 18 H 0.143 0.857 19 C -0.164 4.164 20 C 0.017 3.983 21 H 0.094 0.906 22 N -0.351 5.351 23 C 0.290 3.710 24 O -0.437 6.437 25 C -0.196 4.196 26 C 0.289 3.711 27 N -0.403 5.403 28 O -0.450 6.450 29 C -0.218 4.218 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.038 0.962 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.101 0.899 40 H 0.164 0.836 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.258 0.742 44 H 0.183 0.817 45 H 0.183 0.817 46 H 0.236 0.764 47 H 0.253 0.747 48 H 0.092 0.908 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.963 -18.579 26.427 32.683 hybrid contribution -0.162 0.117 -0.804 0.828 sum -5.125 -18.462 25.623 31.995 Atomic orbital electron populations 1.22156 0.94797 1.03459 1.01470 1.21750 0.95082 0.81328 1.04058 1.48290 1.64080 1.15177 1.06149 1.18664 0.95213 0.91411 0.80657 1.21763 0.97935 1.31792 1.06375 0.92746 1.25884 1.02428 0.94535 0.96515 1.70064 1.37714 1.34372 1.14833 0.85354 0.79001 0.77956 0.78403 1.18919 1.19424 1.20975 1.21426 0.77259 0.86718 0.86678 1.90642 1.47511 1.20892 1.87959 1.21863 1.02117 0.96337 0.86892 1.60079 1.63056 1.06983 1.01051 1.23286 0.94149 0.99448 0.86499 0.85742 1.23373 0.96493 1.03037 0.93498 1.21515 0.97398 0.86608 0.92736 0.90609 1.45496 1.51978 1.11712 1.25902 1.20837 0.78317 0.91210 0.80678 1.90876 1.45568 1.42465 1.64793 1.21662 1.05202 0.96341 0.96387 1.20656 0.81148 0.83854 0.85483 1.43708 1.54923 1.12041 1.29663 1.90916 1.51662 1.29766 1.72705 1.24171 0.98469 1.02143 0.96970 0.94659 0.88528 0.92237 0.91143 0.87723 0.96202 0.98891 0.92507 0.86154 0.89905 0.83570 0.89618 0.88921 0.74203 0.81667 0.81704 0.76427 0.74743 0.90804 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.24 71.98 0.74 -2.94 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.61 -24.94 2.46 -826.13 -2.03 -26.97 16 4 C 0.26 14.22 5.16 85.63 0.44 14.67 16 5 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 9 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 C 0.49 19.80 7.71 87.66 0.68 20.47 16 14 O -0.59 -30.66 15.78 -3.02 -0.05 -30.71 16 15 C 0.06 1.50 4.56 85.56 0.39 1.89 16 16 N -0.68 -17.01 6.25 -492.40 -3.08 -20.09 16 17 C 0.08 1.19 4.07 45.53 0.19 1.38 16 18 H 0.12 1.24 7.87 -2.38 -0.02 1.22 16 19 C -0.13 -1.91 7.62 31.12 0.24 -1.68 16 20 C 0.12 2.03 4.29 45.52 0.20 2.23 16 21 H 0.08 1.71 7.50 -2.39 -0.02 1.69 16 22 N -0.70 -7.48 5.26 -440.03 -2.32 -9.80 16 23 C 0.50 8.27 7.82 87.66 0.69 8.96 16 24 O -0.56 -17.19 13.80 20.39 0.28 -16.91 16 25 C -0.15 -0.76 6.19 29.10 0.18 -0.58 16 26 C 0.50 6.95 8.09 87.66 0.71 7.66 16 27 N -0.84 -3.16 8.87 -173.53 -1.54 -4.70 16 28 O -0.57 -16.62 15.02 20.41 0.31 -16.31 16 29 C -0.18 -2.96 7.51 31.21 0.23 -2.73 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 33 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 34 H 0.10 2.09 6.44 -2.39 -0.02 2.08 16 35 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 36 H -0.01 -0.45 7.42 -2.38 -0.02 -0.46 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.12 2.42 7.39 -2.39 -0.02 2.40 16 39 H 0.08 1.61 7.18 -2.39 -0.02 1.59 16 40 H 0.34 9.73 7.90 -89.69 -0.71 9.03 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.42 1.03 8.70 -92.71 -0.81 0.22 16 44 H 0.17 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.17 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.40 1.71 8.93 -92.71 -0.83 0.88 16 47 H 0.42 -2.05 8.83 -92.70 -0.82 -2.87 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 1.57 7.83 -2.39 -0.02 1.55 16 Total: -1.00 -100.47 408.11 -2.37 -102.84 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.15 Total: 9.66 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 5.89 Total: 22.34 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -8.68 Total: -118.11 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: 0.54 Total: -63.93 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -100.47 -2.37 -102.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690270553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.354 kcal (2) G-P(sol) polarization free energy of solvation -100.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds