Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 119.99803 * 2 1 4 4 N 1.34771 * 120.00221 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00262 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47236 * 34.99729 * 5 4 2 7 7 C 1.53006 * 109.47168 * 155.00062 * 5 4 2 8 8 C 1.50699 * 109.46866 * 294.99936 * 7 5 4 9 9 O 1.21282 * 120.00040 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 5 11 11 C 1.46920 * 120.62943 * 359.97438 * 10 8 7 12 12 C 1.53189 * 108.77781 * 126.36963 * 11 10 8 13 13 C 1.53051 * 109.30931 * 54.63561 * 12 11 10 14 14 C 1.53039 * 109.53702 * 298.63407 * 13 12 11 15 15 H 1.08999 * 109.49991 * 301.41614 * 14 13 12 16 16 C 1.52995 * 109.49740 * 181.35087 * 14 13 12 17 17 N 1.46498 * 109.47276 * 64.99873 * 16 14 13 18 18 C 1.36936 * 120.00532 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99518 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00438 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99739 * 180.02562 * 20 18 17 23 23 H 1.48488 * 109.47070 * 60.00287 * 22 20 18 24 24 H 1.48502 * 109.46631 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47084 * 299.99745 * 22 20 18 26 26 C 1.46927 * 120.62867 * 179.71917 * 10 8 7 27 27 C 1.50698 * 109.47239 * 274.99907 * 5 4 2 28 28 N 1.34778 * 120.00413 * 180.02562 * 27 5 4 29 29 O 1.21282 * 120.00020 * 359.97438 * 27 5 4 30 30 H 1.08991 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46921 * 299.99984 * 1 2 3 32 32 H 1.09003 * 109.46841 * 59.99715 * 1 2 3 33 33 H 0.97007 * 119.99885 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.46955 * 55.00154 * 7 5 4 35 35 H 1.09000 * 109.47050 * 174.99983 * 7 5 4 36 36 H 1.09003 * 109.58803 * 246.16056 * 11 10 8 37 37 H 1.09004 * 109.59025 * 6.43966 * 11 10 8 38 38 H 1.09003 * 109.50277 * 174.58564 * 12 11 10 39 39 H 1.09003 * 109.49719 * 294.68501 * 12 11 10 40 40 H 1.08999 * 109.45896 * 58.65924 * 13 12 11 41 41 H 1.08998 * 109.45669 * 178.63295 * 13 12 11 42 42 H 1.08999 * 109.47387 * 185.00050 * 16 14 13 43 43 H 1.08999 * 109.47030 * 305.00347 * 16 14 13 44 44 H 0.96999 * 119.99650 * 0.02562 * 17 16 14 45 45 H 0.96994 * 120.00492 * 180.02562 * 21 20 18 46 46 H 1.08993 * 109.58980 * 353.41780 * 26 10 8 47 47 H 1.09008 * 109.58351 * 113.84284 * 26 10 8 48 48 H 0.97003 * 119.99607 * 0.02562 * 28 27 5 49 49 H 0.96993 * 120.00580 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5884 7 6 4.1561 -2.4747 0.6081 8 6 3.7580 -2.5414 2.0600 9 8 3.1286 -1.6324 2.5586 10 7 4.1023 -3.6107 2.8047 11 6 4.8651 -4.7192 2.2150 12 6 6.1101 -4.9715 3.0713 13 6 5.6870 -5.2023 4.5239 14 6 4.9800 -3.9535 5.0556 15 1 5.6506 -3.0972 4.9833 16 6 4.5874 -4.1726 6.5180 17 7 5.7969 -4.3095 7.3332 18 6 5.6933 -4.5139 8.6832 19 1 4.7198 -4.5746 9.1470 20 6 6.8394 -4.6431 9.4557 21 7 8.0257 -4.5686 8.8906 22 14 6.6978 -4.9227 11.2972 23 1 5.9506 -6.1805 11.5509 24 1 8.0564 -5.0256 11.8880 25 1 5.9743 -3.7835 11.9167 26 6 3.7267 -3.6872 4.2231 27 6 4.1477 -1.0430 -1.4166 28 7 5.4727 -1.0220 -1.6626 29 8 3.3592 -0.9629 -2.3347 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 3.7213 -3.3188 0.0729 35 1 5.2424 -2.5137 0.5270 36 1 4.2477 -5.6173 2.1943 37 1 5.1641 -4.4579 1.1999 38 1 6.6342 -5.8525 2.7007 39 1 6.7700 -4.1057 3.0177 40 1 5.0075 -6.0531 4.5734 41 1 6.5690 -5.4061 5.1310 42 1 4.0066 -3.3200 6.8700 43 1 3.9885 -5.0795 6.6014 44 1 6.6712 -4.2546 6.9166 45 1 8.8265 -4.6593 9.4302 46 1 3.2769 -2.7442 4.5334 47 1 3.0147 -4.4997 4.3692 48 1 6.1033 -1.0872 -0.9284 49 1 5.7957 -0.9418 -2.5736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690425864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -106.116012 kcal Electronic energy + Delta-G solvation = -30303.567794 eV Core-core repulsion = 26072.463656 eV Total energy + Delta-G solvation = -4231.104138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00624 -39.98278 -38.92727 -37.83021 -35.19359 -35.06583 -34.12114 -32.94514 -31.89553 -31.64827 -30.13310 -29.25745 -26.37556 -25.65029 -24.57106 -22.81993 -21.98631 -21.38484 -20.61267 -20.07224 -19.15683 -18.28704 -17.60957 -17.18258 -17.16700 -16.62931 -16.23320 -15.91008 -15.42253 -15.14483 -14.98264 -14.65909 -14.47041 -14.29495 -14.07624 -13.85456 -13.59120 -13.47845 -13.33499 -13.10975 -12.84989 -12.57938 -12.53346 -12.34357 -12.12553 -12.10436 -11.80212 -11.14097 -10.95135 -10.83818 -10.71082 -10.64100 -10.42449 -10.26327 -10.13538 -10.08680 -10.05372 -9.90381 -9.71373 -9.29878 -8.89982 -8.72121 -6.94728 -5.79213 -3.07638 2.16961 2.37503 2.47443 2.77015 2.81036 3.31703 3.42711 3.47198 3.48047 4.03791 4.12249 4.54639 4.56639 4.58397 4.59089 4.73432 4.84347 4.87656 4.95842 4.99274 5.11488 5.23263 5.24260 5.27292 5.37867 5.50931 5.55292 5.62174 5.74822 5.77571 5.89582 6.00165 6.04953 6.10791 6.15012 6.36976 6.38808 6.42446 6.60070 6.74576 6.83790 6.87645 7.20207 7.27542 7.67588 7.83555 7.95861 8.08162 8.39957 9.51163 10.08469 10.43146 11.43731 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002193 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.504871 B =12764.322074 C =13483.849068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.526 3.474 3 O -0.547 6.547 4 N -0.699 5.699 5 C 0.144 3.856 6 H 0.125 0.875 7 C -0.147 4.147 8 C 0.512 3.488 9 O -0.526 6.526 10 N -0.606 5.606 11 C 0.105 3.895 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.073 0.927 16 C 0.160 3.840 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.119 3.881 27 C 0.509 3.491 28 N -0.853 5.853 29 O -0.530 6.530 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.402 0.598 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.402 0.598 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 0.099 -23.754 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.314 3.686 3 O -0.424 6.424 4 N -0.350 5.350 5 C 0.034 3.966 6 H 0.143 0.857 7 C -0.188 4.188 8 C 0.299 3.701 9 O -0.402 6.402 10 N -0.339 5.339 11 C -0.018 4.018 12 C -0.174 4.174 13 C -0.150 4.150 14 C -0.126 4.126 15 H 0.092 0.908 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.003 4.003 27 C 0.291 3.709 28 N -0.418 5.418 29 O -0.405 6.405 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.237 0.763 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.086 0.914 48 H 0.231 0.769 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.646 1.372 -23.777 25.337 hybrid contribution 0.757 -0.749 0.922 1.408 sum -7.889 0.623 -22.855 24.186 Atomic orbital electron populations 1.21788 0.91427 1.04176 1.05206 1.20679 0.90615 0.83125 0.74191 1.90705 1.70673 1.31405 1.49626 1.45488 1.04682 1.09317 1.75548 1.20498 0.83243 1.00104 0.92736 0.85750 1.21994 1.03952 0.98249 0.94617 1.20233 0.80092 0.81963 0.87857 1.90778 1.39649 1.36723 1.73052 1.48119 1.55046 1.19414 1.11366 1.21827 0.93414 0.89696 0.96850 1.21954 0.96611 1.02285 0.96551 1.21535 1.01647 0.97392 0.94383 1.21598 0.96439 0.98701 0.95902 0.90822 1.20577 0.90881 0.97706 0.87655 1.42326 1.02815 1.87518 1.04823 1.19186 0.92615 1.41299 0.83954 0.91246 1.24729 0.95239 1.02913 0.98086 1.69637 0.96629 1.57267 1.34821 0.86259 0.76474 0.78032 0.85382 1.21273 1.21697 1.21256 1.21582 0.96969 1.03277 0.78451 1.21083 0.82709 0.75315 0.91759 1.43863 1.07261 1.77701 1.12990 1.90744 1.55324 1.48441 1.46028 0.90662 0.88601 0.88794 0.76282 0.87636 0.86949 0.91075 0.90230 0.90733 0.91466 0.92034 0.90169 0.96198 0.96198 0.78241 0.93472 0.88905 0.91389 0.76904 0.76582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.39 36.01 0.37 -0.95 16 2 C 0.53 6.41 7.77 -10.99 -0.09 6.33 16 3 O -0.55 -9.04 16.76 5.55 0.09 -8.95 16 4 N -0.70 -6.88 3.75 -54.93 -0.21 -7.08 16 5 C 0.14 1.32 1.94 -69.08 -0.13 1.18 16 6 H 0.12 1.41 7.39 -51.93 -0.38 1.02 16 7 C -0.15 -0.92 3.53 -27.88 -0.10 -1.02 16 8 C 0.51 5.24 7.56 -10.99 -0.08 5.16 16 9 O -0.53 -7.55 14.77 5.56 0.08 -7.46 16 10 N -0.61 -6.03 2.98 -173.01 -0.52 -6.54 16 11 C 0.10 0.76 6.34 -3.72 -0.02 0.73 16 12 C -0.14 -1.25 6.08 -26.61 -0.16 -1.41 16 13 C -0.11 -1.48 5.06 -26.68 -0.13 -1.61 16 14 C -0.11 -1.59 2.36 -90.70 -0.21 -1.80 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.16 3.07 5.66 -4.05 -0.02 3.05 16 17 N -0.73 -17.94 5.32 -59.91 -0.32 -18.26 16 18 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 C 0.12 1.50 5.69 -3.91 -0.02 1.48 16 27 C 0.51 4.80 7.46 -10.99 -0.08 4.71 16 28 N -0.85 -4.51 8.74 31.22 0.27 -4.23 16 29 O -0.53 -7.16 17.16 5.56 0.10 -7.06 16 30 H 0.07 0.41 7.91 -51.93 -0.41 0.00 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.94 8.44 -40.82 -0.34 2.59 16 34 H 0.11 0.44 7.94 -51.93 -0.41 0.03 16 35 H 0.11 0.40 6.98 -51.93 -0.36 0.04 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.34 5.93 -51.93 -0.31 0.03 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 47 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 48 H 0.40 1.06 8.19 -40.82 -0.33 0.72 16 49 H 0.40 1.77 8.93 -40.82 -0.36 1.40 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -38.97 399.01 -7.43 -46.40 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.71 Total: 8.49 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.93 Total: 8.60 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.04 Total: -63.22 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.27 Total: -23.48 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.97 -7.43 -46.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690425864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.716 kcal (2) G-P(sol) polarization free energy of solvation -38.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds