Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 119.99803 * 2 1 4 4 N 1.34771 * 120.00221 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00262 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47236 * 34.99729 * 5 4 2 7 7 C 1.53006 * 109.47168 * 155.00062 * 5 4 2 8 8 C 1.50699 * 109.46866 * 294.99936 * 7 5 4 9 9 O 1.21282 * 120.00040 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 5 11 11 C 1.46920 * 120.62943 * 359.97438 * 10 8 7 12 12 C 1.53189 * 108.77781 * 126.36963 * 11 10 8 13 13 C 1.53051 * 109.30931 * 54.63561 * 12 11 10 14 14 C 1.53039 * 109.53702 * 298.63407 * 13 12 11 15 15 H 1.08999 * 109.49991 * 301.41614 * 14 13 12 16 16 C 1.52995 * 109.49740 * 181.35087 * 14 13 12 17 17 N 1.46498 * 109.47276 * 64.99873 * 16 14 13 18 18 C 1.36936 * 120.00532 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99518 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00438 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99739 * 180.02562 * 20 18 17 23 23 H 1.48488 * 109.47070 * 60.00287 * 22 20 18 24 24 H 1.48502 * 109.46631 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47084 * 299.99745 * 22 20 18 26 26 C 1.46927 * 120.62867 * 179.71917 * 10 8 7 27 27 C 1.50698 * 109.47239 * 274.99907 * 5 4 2 28 28 N 1.34778 * 120.00413 * 180.02562 * 27 5 4 29 29 O 1.21282 * 120.00020 * 359.97438 * 27 5 4 30 30 H 1.08991 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46921 * 299.99984 * 1 2 3 32 32 H 1.09003 * 109.46841 * 59.99715 * 1 2 3 33 33 H 0.97007 * 119.99885 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.46955 * 55.00154 * 7 5 4 35 35 H 1.09000 * 109.47050 * 174.99983 * 7 5 4 36 36 H 1.09003 * 109.58803 * 246.16056 * 11 10 8 37 37 H 1.09004 * 109.59025 * 6.43966 * 11 10 8 38 38 H 1.09003 * 109.50277 * 174.58564 * 12 11 10 39 39 H 1.09003 * 109.49719 * 294.68501 * 12 11 10 40 40 H 1.08999 * 109.45896 * 58.65924 * 13 12 11 41 41 H 1.08998 * 109.45669 * 178.63295 * 13 12 11 42 42 H 1.08999 * 109.47387 * 185.00050 * 16 14 13 43 43 H 1.08999 * 109.47030 * 305.00347 * 16 14 13 44 44 H 0.96999 * 119.99650 * 0.02562 * 17 16 14 45 45 H 0.96994 * 120.00492 * 180.02562 * 21 20 18 46 46 H 1.08993 * 109.58980 * 353.41780 * 26 10 8 47 47 H 1.09008 * 109.58351 * 113.84284 * 26 10 8 48 48 H 0.97003 * 119.99607 * 0.02562 * 28 27 5 49 49 H 0.96993 * 120.00580 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5884 7 6 4.1561 -2.4747 0.6081 8 6 3.7580 -2.5414 2.0600 9 8 3.1286 -1.6324 2.5586 10 7 4.1023 -3.6107 2.8047 11 6 4.8651 -4.7192 2.2150 12 6 6.1101 -4.9715 3.0713 13 6 5.6870 -5.2023 4.5239 14 6 4.9800 -3.9535 5.0556 15 1 5.6506 -3.0972 4.9833 16 6 4.5874 -4.1726 6.5180 17 7 5.7969 -4.3095 7.3332 18 6 5.6933 -4.5139 8.6832 19 1 4.7198 -4.5746 9.1470 20 6 6.8394 -4.6431 9.4557 21 7 8.0257 -4.5686 8.8906 22 14 6.6978 -4.9227 11.2972 23 1 5.9506 -6.1805 11.5509 24 1 8.0564 -5.0256 11.8880 25 1 5.9743 -3.7835 11.9167 26 6 3.7267 -3.6872 4.2231 27 6 4.1477 -1.0430 -1.4166 28 7 5.4727 -1.0220 -1.6626 29 8 3.3592 -0.9629 -2.3347 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 3.7213 -3.3188 0.0729 35 1 5.2424 -2.5137 0.5270 36 1 4.2477 -5.6173 2.1943 37 1 5.1641 -4.4579 1.1999 38 1 6.6342 -5.8525 2.7007 39 1 6.7700 -4.1057 3.0177 40 1 5.0075 -6.0531 4.5734 41 1 6.5690 -5.4061 5.1310 42 1 4.0066 -3.3200 6.8700 43 1 3.9885 -5.0795 6.6014 44 1 6.6712 -4.2546 6.9166 45 1 8.8265 -4.6593 9.4302 46 1 3.2769 -2.7442 4.5334 47 1 3.0147 -4.4997 4.3692 48 1 6.1033 -1.0872 -0.9284 49 1 5.7957 -0.9418 -2.5736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690425864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -139.049003 kcal Electronic energy + Delta-G solvation = -30304.995875 eV Core-core repulsion = 26072.463656 eV Total energy + Delta-G solvation = -4232.532219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.79762 -40.84582 -39.78590 -38.87589 -36.60686 -36.03588 -34.79896 -34.42683 -32.91116 -32.59166 -31.61961 -30.03600 -27.50004 -26.82419 -25.65611 -24.34077 -23.06032 -22.19604 -21.41035 -21.22906 -19.96798 -19.21787 -18.93257 -18.29921 -17.98548 -17.45058 -17.02423 -16.81434 -16.50865 -16.27988 -15.97804 -15.79596 -15.54188 -15.50565 -15.27367 -14.90650 -14.75638 -14.61382 -14.30924 -14.09771 -13.74927 -13.64625 -13.46866 -13.29147 -13.06464 -13.04095 -12.80874 -12.75015 -12.58322 -12.19616 -12.03044 -11.93270 -11.69253 -11.52516 -11.47796 -11.33821 -11.01504 -10.91982 -10.82148 -10.67469 -10.12433 -9.60255 -9.00265 -7.96244 -5.24673 1.45279 1.46691 1.49578 1.55550 1.60932 1.62678 1.98032 2.11486 2.55572 2.67438 3.37060 3.38185 3.49953 3.80862 3.82377 3.93988 3.96739 4.02843 4.08756 4.13009 4.32235 4.37745 4.44659 4.46213 4.51690 4.61005 4.63622 4.65000 4.73362 4.83093 4.90555 4.92542 4.99584 5.02453 5.23635 5.27729 5.32954 5.44103 5.48091 5.53176 5.56036 5.86660 6.26240 6.36476 6.43989 6.51980 7.17485 7.23186 7.28261 7.32833 8.08510 8.32348 9.27097 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002193 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.504871 B =12764.322074 C =13483.849068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.511 3.489 3 O -0.603 6.603 4 N -0.691 5.691 5 C 0.142 3.858 6 H 0.098 0.902 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.574 6.574 10 N -0.604 5.604 11 C 0.104 3.896 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.093 4.093 15 H 0.051 0.949 16 C 0.157 3.843 17 N -0.742 5.742 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.281 1.281 26 C 0.129 3.871 27 C 0.511 3.489 28 N -0.830 5.830 29 O -0.576 6.576 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.415 0.585 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.010 0.990 43 H 0.027 0.973 44 H 0.375 0.625 45 H 0.252 0.748 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.418 0.582 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 -1.881 -25.522 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.300 3.700 3 O -0.484 6.484 4 N -0.343 5.343 5 C 0.031 3.969 6 H 0.116 0.884 7 C -0.174 4.174 8 C 0.299 3.701 9 O -0.453 6.453 10 N -0.336 5.336 11 C -0.017 4.017 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.113 4.113 15 H 0.069 0.931 16 C 0.030 3.970 17 N -0.385 5.385 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.207 1.207 26 C 0.006 3.994 27 C 0.293 3.707 28 N -0.396 5.396 29 O -0.454 6.454 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.253 0.747 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.045 0.955 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.249 0.751 49 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.977 -0.675 -25.560 27.099 hybrid contribution 0.876 -0.135 1.487 1.731 sum -8.102 -0.810 -24.073 25.412 Atomic orbital electron populations 1.21825 0.88517 1.06240 1.05524 1.21477 0.92342 0.82922 0.73236 1.90666 1.72039 1.33317 1.52393 1.45500 1.05315 1.09350 1.74093 1.20521 0.82964 1.00820 0.92548 0.88403 1.22042 1.06220 0.97739 0.91394 1.20884 0.79059 0.80942 0.89242 1.90777 1.41846 1.38405 1.74301 1.48162 1.55133 1.20303 1.10022 1.22113 0.92152 0.89434 0.98036 1.21920 0.97847 1.03173 0.93824 1.21467 0.99918 0.96449 0.96812 1.21404 0.97399 0.98859 0.93645 0.93057 1.20734 0.89024 0.97303 0.89914 1.42516 1.04054 1.87365 1.04532 1.19592 0.92780 1.40098 0.85480 0.90884 1.25546 0.95015 1.03617 1.02453 1.69792 0.97110 1.58844 1.36159 0.85222 0.76212 0.78232 0.80167 1.20177 1.22025 1.20707 1.21259 0.95534 1.02518 0.80118 1.21059 0.83547 0.74943 0.91121 1.43682 1.06133 1.75614 1.14148 1.90729 1.56705 1.50923 1.47082 0.87738 0.88500 0.88139 0.74739 0.84104 0.83347 0.89236 0.85956 0.88392 0.92028 0.91339 0.93932 0.97210 0.95495 0.79270 0.93945 0.91240 0.89998 0.75060 0.75666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.39 71.24 0.74 -1.72 16 2 C 0.51 12.59 7.77 87.66 0.68 13.27 16 3 O -0.60 -20.85 16.76 -3.05 -0.05 -20.90 16 4 N -0.69 -12.94 3.75 -446.10 -1.67 -14.61 16 5 C 0.14 2.38 1.94 44.25 0.09 2.46 16 6 H 0.10 2.23 7.39 -2.39 -0.02 2.22 16 7 C -0.13 -1.16 3.53 29.85 0.11 -1.05 16 8 C 0.51 9.28 7.56 87.66 0.66 9.95 16 9 O -0.57 -16.32 14.77 -3.04 -0.04 -16.36 16 10 N -0.60 -10.36 2.98 -819.66 -2.44 -12.80 16 11 C 0.10 1.00 6.34 86.36 0.55 1.55 16 12 C -0.13 -1.98 6.08 30.67 0.19 -1.80 16 13 C -0.11 -2.77 5.06 30.62 0.15 -2.62 16 14 C -0.09 -2.79 2.36 -10.85 -0.03 -2.82 16 15 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 16 C 0.16 6.17 5.66 86.38 0.49 6.66 16 17 N -0.74 -37.46 5.32 -343.47 -1.83 -39.29 16 18 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 19 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 20 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 21 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 22 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.13 3.12 5.69 86.23 0.49 3.62 16 27 C 0.51 8.74 7.46 87.66 0.65 9.39 16 28 N -0.83 -6.57 8.74 -173.53 -1.52 -8.09 16 29 O -0.58 -14.98 17.16 -3.04 -0.05 -15.03 16 30 H 0.10 0.92 7.91 -2.39 -0.02 0.90 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.42 5.23 8.44 -92.70 -0.78 4.44 16 34 H 0.14 0.35 7.94 -2.39 -0.02 0.33 16 35 H 0.15 0.25 6.98 -2.39 -0.02 0.24 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.12 0.21 5.93 -2.39 -0.01 0.20 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.41 7.15 -2.39 -0.02 1.39 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.37 19.98 6.85 -92.71 -0.63 19.35 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.07 2.03 7.01 -2.39 -0.02 2.01 16 47 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 48 H 0.42 0.79 8.19 -92.71 -0.76 0.04 16 49 H 0.41 2.55 8.93 -92.71 -0.83 1.72 16 Total: -1.00 -90.68 399.01 -1.21 -91.88 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -1.99 Total: 25.63 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.08 Total: 20.07 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -7.17 Total: -133.33 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.15 Total: -52.30 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -90.68 -1.21 -91.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690425864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.165 kcal (2) G-P(sol) polarization free energy of solvation -90.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds