Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 120.00049 * 2 1 4 4 N 1.34774 * 119.99794 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00210 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46972 * 34.99378 * 5 4 2 7 7 C 1.53001 * 109.47452 * 154.99859 * 5 4 2 8 8 C 1.50694 * 109.46897 * 295.00399 * 7 5 4 9 9 O 1.21281 * 120.00629 * 359.97438 * 8 7 5 10 10 N 1.34781 * 119.99878 * 180.02562 * 8 7 5 11 11 C 1.46931 * 120.62964 * 0.02562 * 10 8 7 12 12 C 1.53190 * 108.77281 * 233.59228 * 11 10 8 13 13 C 1.53036 * 109.31429 * 305.36387 * 12 11 10 14 14 C 1.53040 * 109.53744 * 61.36927 * 13 12 11 15 15 H 1.08996 * 109.52535 * 58.60401 * 14 13 12 16 16 C 1.53005 * 109.49487 * 178.68698 * 14 13 12 17 17 N 1.46505 * 109.46904 * 294.83516 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.46921 * 120.63198 * 179.97438 * 10 8 7 27 27 C 1.50706 * 109.46789 * 275.00107 * 5 4 2 28 28 N 1.34770 * 119.99687 * 179.97438 * 27 5 4 29 29 O 1.21279 * 120.00098 * 359.97438 * 27 5 4 30 30 H 1.09000 * 109.46837 * 269.99965 * 1 2 3 31 31 H 1.09003 * 109.46814 * 29.99375 * 1 2 3 32 32 H 1.09000 * 109.47407 * 149.99925 * 1 2 3 33 33 H 0.97005 * 120.00001 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.47023 * 174.99691 * 7 5 4 35 35 H 1.09002 * 109.46836 * 55.00146 * 7 5 4 36 36 H 1.08997 * 109.58559 * 353.37952 * 11 10 8 37 37 H 1.08997 * 109.58338 * 113.80273 * 11 10 8 38 38 H 1.08994 * 109.50142 * 65.31871 * 12 11 10 39 39 H 1.09000 * 109.49287 * 185.38245 * 12 11 10 40 40 H 1.09006 * 109.45925 * 301.34827 * 13 12 11 41 41 H 1.08998 * 109.45879 * 181.39237 * 13 12 11 42 42 H 1.09003 * 109.46946 * 174.84275 * 16 14 13 43 43 H 1.08993 * 109.47679 * 54.83818 * 16 14 13 44 44 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 45 45 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.58970 * 6.61964 * 26 10 8 47 47 H 1.09002 * 109.58794 * 246.19392 * 26 10 8 48 48 H 0.97003 * 120.00536 * 0.02562 * 28 27 5 49 49 H 0.97004 * 120.00044 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 1 4.0090 -0.3259 0.5901 7 6 4.1557 -2.4751 0.6090 8 6 3.7564 -2.5424 2.0605 9 8 3.1265 -1.6338 2.5591 10 7 4.1001 -3.6121 2.8051 11 6 4.8644 -4.7199 2.2157 12 6 4.1140 -6.0299 2.4759 13 6 3.8535 -6.1745 3.9770 14 6 2.9803 -5.0138 4.4590 15 1 2.0409 -5.0106 3.9063 16 6 2.6933 -5.1769 5.9531 17 7 1.8849 -6.3800 6.1665 18 6 1.5022 -6.7317 7.4333 19 1 1.7958 -6.1221 8.2751 20 6 0.7313 -7.8685 7.6349 21 7 0.3589 -8.2036 8.8520 22 14 0.2228 -8.9225 6.1789 23 1 1.2525 -9.9654 5.9392 24 1 -1.0810 -9.5715 6.4691 25 1 0.0927 -8.0685 4.9710 26 6 3.7185 -3.6919 4.2216 27 6 4.1487 -1.0425 -1.4152 28 7 5.4738 -1.0205 -1.6599 29 8 3.3609 -0.9620 -2.3337 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6958 -2.0073 -0.0005 34 1 5.2419 -2.5141 0.5287 35 1 3.7212 -3.3190 0.0731 36 1 4.9653 -4.5636 1.1418 37 1 5.8520 -4.7671 2.6746 38 1 3.1642 -6.0174 1.9414 39 1 4.7162 -6.8692 2.1281 40 1 4.8025 -6.1620 4.5131 41 1 3.3415 -7.1177 4.1674 42 1 2.1495 -4.3047 6.3159 43 1 3.6340 -5.2703 6.4957 44 1 1.6209 -6.9273 5.4104 45 1 -0.1794 -8.9981 8.9930 46 1 3.0633 -2.8573 4.4712 47 1 4.6130 -3.6556 4.8436 48 1 6.1040 -1.0853 -0.9253 49 1 5.7975 -0.9398 -2.5708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690425865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -102.055674 kcal Electronic energy + Delta-G solvation = -30502.090687 eV Core-core repulsion = 26271.162619 eV Total energy + Delta-G solvation = -4230.928068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06136 -40.04981 -38.95303 -37.94275 -35.25774 -35.22908 -34.17187 -33.00345 -31.97975 -31.70668 -30.51467 -29.34653 -26.50679 -25.89360 -24.63140 -22.67377 -21.92662 -21.39613 -20.64921 -20.24021 -19.24632 -18.37543 -17.69715 -17.58492 -17.19197 -16.71638 -16.31012 -15.98244 -15.47451 -15.16424 -15.01028 -14.73982 -14.56049 -14.33566 -14.08589 -14.02988 -13.82764 -13.61234 -13.38237 -12.90361 -12.85897 -12.80904 -12.51358 -12.43868 -12.28896 -12.17037 -11.97277 -11.28488 -11.22270 -10.95204 -10.83057 -10.68106 -10.57000 -10.42434 -10.17807 -10.13764 -10.06908 -9.97517 -9.62367 -9.32775 -8.94631 -8.81773 -7.27114 -5.80195 -3.15900 2.12217 2.30105 2.44949 2.69636 2.79257 3.26219 3.32339 3.34015 3.41005 3.97463 4.05958 4.45411 4.51921 4.54606 4.54857 4.68357 4.74086 4.78324 4.82836 4.91560 5.04593 5.12713 5.20093 5.24232 5.28024 5.39529 5.49291 5.59689 5.63343 5.66158 5.75547 5.77643 5.87133 5.96529 6.03223 6.23904 6.29864 6.31592 6.36398 6.61902 6.70258 6.82059 7.12032 7.25297 7.78877 7.88100 7.95952 8.06583 8.38741 9.17471 9.89626 10.09299 11.38300 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002486 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.746412 B =11261.465963 C =11961.496047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.528 3.472 3 O -0.548 6.548 4 N -0.700 5.700 5 C 0.145 3.855 6 H 0.124 0.876 7 C -0.148 4.148 8 C 0.512 3.488 9 O -0.525 6.525 10 N -0.607 5.607 11 C 0.105 3.895 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.111 4.111 15 H 0.073 0.927 16 C 0.164 3.836 17 N -0.754 5.754 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.120 3.880 27 C 0.508 3.492 28 N -0.854 5.854 29 O -0.528 6.528 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.404 0.596 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.401 0.599 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.787 10.307 -22.653 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.316 3.684 3 O -0.425 6.425 4 N -0.352 5.352 5 C 0.035 3.965 6 H 0.142 0.858 7 C -0.188 4.188 8 C 0.299 3.701 9 O -0.400 6.400 10 N -0.341 5.341 11 C -0.018 4.018 12 C -0.175 4.175 13 C -0.152 4.152 14 C -0.130 4.130 15 H 0.091 0.909 16 C 0.036 3.964 17 N -0.400 5.400 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.003 4.003 27 C 0.290 3.710 28 N -0.419 5.419 29 O -0.403 6.403 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.230 0.770 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.159 11.623 -22.588 28.163 hybrid contribution -0.087 -1.540 -0.947 1.810 sum 12.072 10.083 -23.535 28.306 Atomic orbital electron populations 1.21841 0.91322 1.04803 1.04974 1.20690 0.90659 0.83049 0.74046 1.90692 1.70768 1.31418 1.49653 1.45468 1.04627 1.09441 1.75647 1.20483 0.83348 0.99949 0.92715 0.85821 1.21996 1.03836 0.98387 0.94627 1.20242 0.79925 0.82178 0.87778 1.90784 1.39284 1.36991 1.72982 1.48123 1.55137 1.19137 1.11685 1.21820 0.95077 0.86507 0.98360 1.21957 1.00900 0.96495 0.98157 1.21557 1.00349 0.99300 0.93953 1.21737 0.98764 0.93862 0.98648 0.90868 1.20562 0.94655 0.90263 0.90892 1.42687 1.63619 1.27673 1.06005 1.19062 1.26615 1.07274 0.84422 0.89193 1.24677 1.00161 0.98351 0.95996 1.69696 1.41886 1.27493 1.19100 0.86554 0.78194 0.80857 0.82950 1.21076 1.21695 1.20431 1.21663 1.00011 0.98926 0.79668 1.21098 0.82695 0.75366 0.91797 1.43856 1.07237 1.77868 1.12934 1.90753 1.55345 1.48212 1.45956 0.88534 0.88907 0.90178 0.76162 0.87038 0.87540 0.90130 0.90891 0.91563 0.90647 0.91524 0.90906 0.95331 0.95283 0.80674 0.93032 0.88709 0.91101 0.77027 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.30 36.01 0.37 -1.09 16 2 C 0.53 6.52 7.77 -10.98 -0.09 6.44 16 3 O -0.55 -8.96 16.76 5.55 0.09 -8.87 16 4 N -0.70 -7.00 3.75 -54.93 -0.21 -7.20 16 5 C 0.15 1.26 1.94 -69.08 -0.13 1.12 16 6 H 0.12 1.29 7.39 -51.93 -0.38 0.91 16 7 C -0.15 -0.83 3.53 -27.89 -0.10 -0.93 16 8 C 0.51 4.89 7.56 -10.99 -0.08 4.80 16 9 O -0.52 -7.19 14.77 5.56 0.08 -7.11 16 10 N -0.61 -5.53 2.97 -172.73 -0.51 -6.04 16 11 C 0.11 0.66 6.34 -3.71 -0.02 0.64 16 12 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 13 C -0.11 -1.35 5.05 -26.69 -0.13 -1.49 16 14 C -0.11 -1.50 2.38 -90.47 -0.21 -1.72 16 15 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 16 C 0.16 2.97 5.65 -4.04 -0.02 2.94 16 17 N -0.75 -17.23 5.12 -59.90 -0.31 -17.54 16 18 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16 22 Si 0.88 21.62 27.74 -169.99 -4.72 16.91 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.37 6.51 56.52 0.37 -6.00 16 26 C 0.12 1.39 5.72 -3.68 -0.02 1.37 16 27 C 0.51 4.57 7.46 -10.99 -0.08 4.48 16 28 N -0.85 -3.85 8.74 31.22 0.27 -3.58 16 29 O -0.53 -7.05 17.16 5.56 0.10 -6.96 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 3.19 8.60 -40.82 -0.35 2.84 16 34 H 0.11 0.26 7.23 -51.93 -0.38 -0.12 16 35 H 0.11 0.45 7.69 -51.93 -0.40 0.05 16 36 H 0.08 0.28 5.93 -51.93 -0.31 -0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.03 7.16 -51.93 -0.37 0.66 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.36 7.99 4.72 -40.82 -0.19 7.80 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.09 1.27 7.01 -51.93 -0.36 0.91 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.40 0.60 8.19 -40.82 -0.33 0.26 16 49 H 0.40 1.50 8.93 -40.82 -0.36 1.13 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -39.97 396.25 -7.08 -47.05 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.69 Total: 7.34 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.94 Total: 8.36 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.02 Total: -62.69 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.27 Total: -22.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.97 -7.08 -47.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690425865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.005 kcal (2) G-P(sol) polarization free energy of solvation -39.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds