Wall clock time and date at job start Sat Apr 11 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47059 * 2 1 4 4 C 1.34774 * 119.99544 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00472 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.47294 * 180.02562 * 6 4 3 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 4 10 10 C 1.47018 * 125.64727 * 359.68700 * 9 7 6 11 11 C 1.54338 * 107.26735 * 178.85202 * 10 9 7 12 12 C 1.55164 * 103.01948 * 338.14177 * 11 10 9 13 13 H 1.08998 * 111.00264 * 277.23699 * 12 11 10 14 14 C 1.52993 * 111.03602 * 153.39383 * 12 11 10 15 15 N 1.46898 * 109.47205 * 72.78825 * 14 12 11 16 16 C 1.46897 * 111.00039 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47233 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99978 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00303 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00188 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99872 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00235 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00155 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99807 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47548 * 89.99792 * 24 22 20 26 26 H 1.48505 * 109.47063 * 210.00139 * 24 22 20 27 27 H 1.48505 * 109.46777 * 329.99480 * 24 22 20 28 28 C 1.47429 * 125.64908 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.47420 * 59.99456 * 1 2 3 30 30 H 1.09002 * 109.47451 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46832 * 299.99894 * 1 2 3 32 32 H 1.08996 * 109.46524 * 240.00106 * 2 1 3 33 33 H 1.08992 * 109.46876 * 120.00439 * 2 1 3 34 34 H 0.96994 * 120.00700 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.46953 * 299.99667 * 6 4 3 36 36 H 1.09000 * 109.47318 * 59.99264 * 6 4 3 37 37 H 1.09005 * 109.88268 * 298.39740 * 10 9 7 38 38 H 1.08999 * 109.88524 * 59.55866 * 10 9 7 39 39 H 1.08999 * 110.85174 * 219.67197 * 11 10 9 40 40 H 1.09004 * 110.51168 * 96.44944 * 11 10 9 41 41 H 1.09002 * 109.46963 * 192.78456 * 14 12 11 42 42 H 1.09000 * 109.47391 * 312.77914 * 14 12 11 43 43 H 1.00897 * 110.99618 * 303.94996 * 15 14 12 44 44 H 1.09000 * 109.46977 * 299.99777 * 16 15 14 45 45 H 1.09002 * 109.47389 * 59.99597 * 16 15 14 46 46 H 0.97001 * 120.00102 * 359.97438 * 19 17 16 47 47 H 0.97003 * 119.99969 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36242 * 322.92933 * 28 9 7 49 49 H 1.09001 * 110.36419 * 85.14116 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8459 3.0482 0.0001 7 6 5.3529 3.0481 -0.0013 8 8 5.9592 1.9978 -0.0022 9 7 6.0268 4.2153 -0.0006 10 6 5.4206 5.5547 -0.0050 11 6 6.5741 6.5796 0.0274 12 6 7.7546 5.7591 0.6109 13 1 7.7059 5.7241 1.6992 14 6 9.0984 6.3210 0.1428 15 7 9.3665 7.5891 0.8341 16 6 10.6519 8.1590 0.4090 17 6 10.8917 9.4564 1.1372 18 8 10.0720 9.8663 1.9318 19 7 12.0163 10.1618 0.9048 20 6 12.2346 11.3418 1.5677 21 1 11.5052 11.7064 2.2758 22 6 13.3944 12.0688 1.3285 23 7 13.6034 13.2002 1.9635 24 14 14.6564 11.4379 0.1043 25 1 14.3426 11.9670 -1.2473 26 1 16.0106 11.8915 0.5113 27 1 14.6194 9.9536 0.0758 28 6 7.4939 4.3603 -0.0012 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5625 -0.8895 36 1 3.4829 3.5616 0.8904 37 1 4.8271 5.6900 -0.9092 38 1 4.7913 5.6797 0.8762 39 1 6.3291 7.4191 0.6781 40 1 6.8058 6.9258 -0.9799 41 1 9.8902 5.6078 0.3721 42 1 9.0653 6.4935 -0.9330 43 1 8.6141 8.2457 0.6896 44 1 11.4542 7.4584 0.6405 45 1 10.6300 8.3442 -0.6649 46 1 12.6717 9.8342 0.2691 47 1 14.4128 13.7079 1.7963 48 1 7.9519 3.5857 0.6138 49 1 7.8794 4.3125 -1.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690703982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:19 Heat of formation + Delta-G solvation = -99.312508 kcal Electronic energy + Delta-G solvation = -28364.091164 eV Core-core repulsion = 24133.282049 eV Total energy + Delta-G solvation = -4230.809116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75742 -39.61145 -38.52627 -37.75455 -35.65948 -35.39797 -33.93357 -32.55496 -31.71201 -31.50888 -30.01183 -29.62746 -27.32325 -24.98048 -23.79681 -23.18138 -23.01062 -21.25659 -20.55258 -19.48844 -19.37832 -18.35748 -17.84096 -17.19628 -16.70003 -16.40408 -16.21248 -15.74655 -15.61451 -15.35076 -14.91469 -14.84535 -14.50687 -14.08994 -13.99016 -13.87487 -13.55891 -13.28531 -13.17400 -13.07827 -12.87417 -12.79513 -12.54174 -12.36471 -12.33701 -12.28207 -12.04151 -11.92790 -11.68158 -11.28959 -11.18287 -10.96003 -10.89039 -10.60336 -10.45532 -9.98709 -9.69576 -9.58472 -9.49881 -8.90838 -8.61561 -8.21843 -8.16278 -6.32311 -3.83826 2.24711 2.34804 2.44982 2.97555 3.02236 3.05806 3.14534 3.72697 3.90535 4.04783 4.09563 4.23986 4.27750 4.45484 4.53634 4.56013 4.63445 4.74139 4.75667 4.81403 4.84596 4.97186 5.07116 5.15713 5.20712 5.29451 5.32566 5.38483 5.41952 5.50457 5.52844 5.56455 5.61561 5.64259 5.79561 5.85114 5.91686 5.97788 5.98563 6.11553 7.01831 7.04973 7.21157 7.53949 7.57227 7.82711 8.00271 8.13229 8.58501 8.93718 9.41263 9.81302 10.80787 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.044855 B = 0.001413 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.078685 B =19808.823417 C =20201.290329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.510 3.490 5 O -0.492 6.492 6 C -0.161 4.161 7 C 0.528 3.472 8 O -0.496 6.496 9 N -0.623 5.623 10 C 0.100 3.900 11 C -0.132 4.132 12 C -0.098 4.098 13 H 0.098 0.902 14 C 0.070 3.930 15 N -0.667 5.667 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.114 3.886 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.350 0.650 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.371 0.629 47 H 0.273 0.727 48 H 0.081 0.919 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.774 -21.201 -9.005 33.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.204 4.204 7 C 0.314 3.686 8 O -0.368 6.368 9 N -0.359 5.359 10 C -0.023 4.023 11 C -0.170 4.170 12 C -0.117 4.117 13 H 0.116 0.884 14 C -0.060 4.060 15 N -0.300 5.300 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.170 0.830 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.046 -22.412 -7.864 33.798 hybrid contribution 0.520 0.568 -1.856 2.010 sum -23.525 -21.844 -9.721 33.542 Atomic orbital electron populations 1.22007 0.94354 1.03341 1.02522 1.21278 0.94172 0.82873 1.02536 1.46038 1.06875 1.08994 1.77382 1.20026 0.82346 0.90816 0.77402 1.90881 1.54404 1.45447 1.45669 1.21565 0.95096 0.97081 1.06609 1.19559 0.88749 0.82624 0.77686 1.90878 1.69289 1.29660 1.46981 1.48495 1.07574 1.05484 1.74383 1.22087 0.96737 0.81912 1.01592 1.22772 0.94159 0.97748 1.02349 1.22385 0.94252 0.93194 1.01880 0.88359 1.21854 0.96098 0.92672 0.95361 1.60021 1.04266 1.05750 1.59966 1.21707 0.93354 0.96328 0.97107 1.19705 0.83802 0.86253 0.86710 1.90561 1.45671 1.70782 1.37712 1.42209 1.18927 1.21961 1.39879 1.19436 1.06437 0.95734 1.21854 0.86276 1.25033 0.97436 0.95817 0.97794 1.69621 1.27285 1.13790 1.41420 0.86678 0.82003 0.78985 0.81760 1.19667 1.20150 1.19447 1.22200 0.80103 0.97425 1.01159 0.91957 0.90737 0.91915 0.91513 0.91479 0.76719 0.86189 0.86069 0.91375 0.91173 0.89094 0.90521 0.90575 0.95097 0.83026 0.89396 0.93743 0.79674 0.91604 0.90099 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.42 10.03 37.16 0.37 -0.05 16 2 C 0.11 0.64 6.39 -4.04 -0.03 0.61 16 3 N -0.74 -4.05 5.56 -60.30 -0.33 -4.39 16 4 C 0.51 4.73 7.82 -10.98 -0.09 4.64 16 5 O -0.49 -7.40 14.18 -18.96 -0.27 -7.67 16 6 C -0.16 -1.01 5.38 -29.03 -0.16 -1.17 16 7 C 0.53 5.80 7.84 -10.99 -0.09 5.71 16 8 O -0.50 -8.07 14.44 -18.96 -0.27 -8.34 16 9 N -0.62 -5.65 3.33 -170.52 -0.57 -6.22 16 10 C 0.10 0.60 6.49 -3.06 -0.02 0.58 16 11 C -0.13 -0.95 5.90 -24.89 -0.15 -1.09 16 12 C -0.10 -0.88 3.25 -88.48 -0.29 -1.17 16 13 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.07 0.73 5.19 -3.83 -0.02 0.71 16 15 N -0.67 -9.54 6.13 -115.06 -0.70 -10.25 16 16 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 17 C 0.45 9.98 7.82 -10.99 -0.09 9.90 16 18 O -0.57 -14.87 15.78 5.55 0.09 -14.79 16 19 N -0.59 -13.87 5.09 -10.96 -0.06 -13.92 16 20 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 24 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 C 0.11 1.09 6.37 -2.54 -0.02 1.07 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 0.82 8.47 -40.82 -0.35 0.47 16 35 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 43 H 0.35 5.07 7.93 -39.29 -0.31 4.76 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 49 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -39.37 405.04 -8.82 -48.18 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.03 Total: 8.83 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -0.84 Total: 12.78 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.89 Total: -59.58 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.45 Total: -30.79 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.37 -8.82 -48.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690703982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.128 kcal (2) G-P(sol) polarization free energy of solvation -39.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds