Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00037 * 2 1 4 4 H 1.08001 * 119.99855 * 202.38736 * 3 2 1 5 5 C 1.38817 * 120.00021 * 22.39203 * 3 2 1 6 6 N 1.31617 * 119.99504 * 11.32657 * 5 3 2 7 7 Si 1.86792 * 119.99930 * 191.31939 * 5 3 2 8 8 H 1.48499 * 109.47628 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46796 * 119.99925 * 7 5 3 10 10 H 1.48497 * 109.47552 * 239.99741 * 7 5 3 11 11 C 1.46497 * 120.00088 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47337 * 269.99975 * 11 2 1 13 13 H 1.08998 * 110.88145 * 51.11519 * 12 11 2 14 14 C 1.55163 * 111.00041 * 287.19788 * 12 11 2 15 15 C 1.54319 * 102.85654 * 206.22673 * 14 12 11 16 16 N 1.47022 * 107.27809 * 22.52658 * 15 14 12 17 17 C 1.34772 * 125.64749 * 180.96876 * 16 15 14 18 18 O 1.21280 * 120.00227 * 179.69031 * 17 16 15 19 19 C 1.50705 * 120.00050 * 359.68665 * 17 16 15 20 20 H 1.08997 * 115.54072 * 325.59565 * 19 17 16 21 21 C 1.52962 * 117.47617 * 111.18348 * 19 17 16 22 22 H 1.08994 * 118.97888 * 356.70297 * 21 19 17 23 23 C 1.50950 * 118.97409 * 201.36370 * 21 19 17 24 24 C 1.38790 * 129.72764 * 115.02464 * 23 21 19 25 25 C 1.38020 * 120.31560 * 179.97438 * 24 23 21 26 26 C 1.38250 * 119.88530 * 359.97438 * 25 24 23 27 27 C 1.38017 * 119.87631 * 0.02562 * 26 25 24 28 28 C 1.37806 * 110.47733 * 294.96826 * 23 21 19 29 29 C 1.50968 * 110.46474 * 0.09828 * 28 23 21 30 30 C 1.53045 * 117.48115 * 179.97438 * 19 17 16 31 31 H 1.09001 * 119.99365 * 3.86957 * 30 19 17 32 32 C 1.47418 * 108.70307 * 0.70210 * 16 15 14 33 33 H 1.08994 * 109.46447 * 274.20566 * 1 2 3 34 34 H 1.08998 * 109.46887 * 34.20075 * 1 2 3 35 35 H 1.09001 * 109.46912 * 154.20354 * 1 2 3 36 36 H 0.97008 * 119.99545 * 180.02562 * 6 5 3 37 37 H 1.08997 * 109.47293 * 150.00023 * 11 2 1 38 38 H 1.09002 * 109.47070 * 29.99902 * 11 2 1 39 39 H 1.08997 * 110.71892 * 324.77977 * 14 12 11 40 40 H 1.08996 * 110.71796 * 87.88212 * 14 12 11 41 41 H 1.08995 * 109.98467 * 263.04223 * 15 14 12 42 42 H 1.09000 * 109.77133 * 141.88287 * 15 14 12 43 43 H 1.08001 * 119.84580 * 0.19997 * 24 23 21 44 44 H 1.08000 * 120.05309 * 179.97438 * 25 24 23 45 45 H 1.07994 * 120.05744 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.84376 * 180.02562 * 27 26 25 47 47 H 1.08995 * 109.92318 * 119.63973 * 29 28 23 48 48 H 1.09004 * 109.91670 * 240.94821 * 29 28 23 49 49 H 1.09001 * 110.36785 * 94.93877 * 32 16 15 50 50 H 1.09007 * 110.36939 * 217.15234 * 32 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3562 5 6 1.5342 2.3428 0.4580 6 7 0.3848 2.2686 1.0949 7 14 2.3372 4.0046 0.1704 8 1 3.6141 3.8170 -0.5642 9 1 1.4271 4.8620 -0.6309 10 1 2.6083 4.6562 1.4769 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7111 1.4418 13 1 1.5295 -1.6979 2.0212 14 6 3.5418 -0.8303 2.1092 15 6 4.1298 -1.7676 3.1849 16 7 3.8377 -3.1472 2.7689 17 6 4.1702 -4.2605 3.4516 18 8 3.8723 -5.3518 3.0143 19 6 4.9125 -4.1495 4.7585 20 1 5.6271 -3.3292 4.8249 21 6 4.1590 -4.5343 6.0329 22 1 3.1094 -4.8189 5.9603 23 6 4.6450 -4.0012 7.3589 24 6 4.0263 -3.1311 8.2457 25 6 4.6557 -2.7683 9.4192 26 6 5.9082 -3.2740 9.7139 27 6 6.5250 -4.1393 8.8332 28 6 5.8935 -4.5053 7.6528 29 6 6.3650 -5.4229 6.5507 30 6 5.2605 -5.4504 5.4857 31 1 5.0285 -6.4109 5.0255 32 6 3.1151 -3.1106 1.4844 33 1 -0.3632 0.0754 1.0249 34 1 -0.3633 0.8499 -0.5776 35 1 -0.3633 -0.9253 -0.4472 36 1 -0.0456 3.0771 1.4146 37 1 3.1499 -1.1381 -0.5143 38 1 1.6084 -2.0281 -0.5147 39 1 4.3035 -0.5436 1.3842 40 1 3.0962 0.0523 2.5680 41 1 3.6651 -1.5651 4.1498 42 1 5.2078 -1.6212 3.2522 43 1 3.0461 -2.7388 8.0181 44 1 4.1705 -2.0907 10.1061 45 1 6.4034 -2.9917 10.6312 46 1 7.5033 -4.5343 9.0642 47 1 7.2891 -5.0396 6.1182 48 1 6.5249 -6.4262 6.9458 49 1 3.8116 -3.2261 0.6539 50 1 2.3562 -3.8925 1.4537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691985519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = 46.264903 kcal Electronic energy + Delta-G solvation = -29082.436711 eV Core-core repulsion = 25268.789569 eV Total energy + Delta-G solvation = -3813.647142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24362 -39.63704 -37.83423 -36.73810 -35.34186 -32.33914 -31.94113 -30.86936 -30.39126 -29.00481 -28.03740 -26.25981 -25.73737 -24.32984 -22.89244 -22.16709 -21.39773 -20.87669 -20.60616 -19.61296 -18.92372 -17.35659 -16.84626 -16.51370 -16.04835 -15.59549 -15.41230 -15.17423 -14.78878 -14.30822 -13.92840 -13.82808 -13.52286 -13.49900 -13.36475 -13.05687 -13.00063 -12.77438 -12.75061 -12.40173 -12.09945 -11.94986 -11.83779 -11.57219 -11.21902 -11.10552 -10.95267 -10.91720 -10.85294 -10.70295 -10.39447 -10.29158 -10.24722 -10.02467 -9.89123 -9.79371 -9.73454 -9.02247 -8.75985 -8.55907 -8.46904 -6.77735 -5.73740 -3.19348 1.01502 1.11361 2.45502 2.95274 3.35151 3.35357 3.43406 3.44442 3.66408 4.09115 4.27184 4.47593 4.54810 4.60934 4.69082 4.77931 4.82629 4.88267 5.04141 5.06064 5.13659 5.23310 5.31367 5.33017 5.46116 5.47097 5.48558 5.54548 5.65843 5.69201 5.74266 5.79365 5.83367 5.92788 5.98325 6.02422 6.17294 6.22992 6.25692 6.33251 6.38768 6.40741 6.59762 6.61995 6.71987 6.77076 6.84485 7.00523 7.38791 7.65001 7.72637 7.80016 8.21954 8.38380 9.22593 9.85998 10.35262 11.31103 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002536 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.169416 B =11040.373728 C =12366.012638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.600 5.600 3 C -0.247 4.247 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.900 3.100 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.163 3.837 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.107 4.107 15 C 0.097 3.903 16 N -0.608 5.608 17 C 0.558 3.442 18 O -0.547 6.547 19 C -0.141 4.141 20 H 0.122 0.878 21 C -0.099 4.099 22 H 0.122 0.878 23 C -0.066 4.066 24 C -0.097 4.097 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.109 4.109 28 C -0.093 4.093 29 C -0.055 4.055 30 C -0.124 4.124 31 H 0.135 0.865 32 C 0.108 3.892 33 H 0.027 0.973 34 H 0.044 0.956 35 H -0.004 1.004 36 H 0.251 0.749 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.066 0.934 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.106 -12.982 14.347 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.322 5.322 3 C -0.376 4.376 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.034 3.966 12 C -0.137 4.137 13 H 0.096 0.904 14 C -0.145 4.145 15 C -0.026 4.026 16 N -0.340 5.340 17 C 0.346 3.654 18 O -0.425 6.425 19 C -0.162 4.162 20 H 0.140 0.860 21 C -0.117 4.117 22 H 0.140 0.860 23 C -0.066 4.066 24 C -0.115 4.115 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.128 4.128 28 C -0.093 4.093 29 C -0.092 4.092 30 C -0.143 4.143 31 H 0.152 0.848 32 C -0.014 4.014 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.084 0.916 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.849 -13.474 14.192 22.375 hybrid contribution 0.303 1.254 0.143 1.298 sum 11.152 -12.220 14.335 21.890 Atomic orbital electron populations 1.20802 0.82526 0.95574 0.99237 1.43960 1.01890 1.00626 1.85741 1.19194 0.97848 0.85284 1.35324 0.91439 1.25006 0.97701 0.98370 0.98645 1.70077 1.17842 1.26839 1.40548 0.86244 0.78681 0.84586 0.77403 1.20371 1.21735 1.21793 1.20761 0.96019 0.88322 0.91462 1.23182 0.97780 0.91039 1.01696 0.90448 1.22494 0.97886 0.97615 0.96494 1.22231 0.99824 0.81019 0.99478 1.48487 1.56424 1.06047 1.23055 1.19021 0.79023 0.83050 0.84282 1.90681 1.55573 1.26465 1.69819 1.22159 1.02755 1.00730 0.90603 0.86043 1.21377 0.98526 1.03089 0.88724 0.86007 1.19659 0.94867 0.97592 0.94506 1.20771 1.00222 0.96802 0.93684 1.21061 0.95547 1.00354 0.96966 1.21046 0.95532 0.97511 0.99440 1.20628 0.99987 0.98726 0.93409 1.20505 0.94837 0.98609 0.95330 1.20338 0.97958 0.99226 0.91647 1.22931 0.96865 0.95346 0.99117 0.84766 1.22429 0.95340 0.99240 0.84412 0.95429 0.93689 0.98550 0.93883 0.93496 0.94164 0.90931 0.89034 0.91660 0.92003 0.85888 0.85682 0.85799 0.86115 0.89623 0.89235 0.91620 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 9.01 59.85 0.54 4.45 16 2 N -0.60 -14.28 2.91 -181.12 -0.53 -14.80 16 3 C -0.25 -6.36 9.00 -15.06 -0.14 -6.49 16 4 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16 5 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 6 N -0.91 -25.49 10.59 55.49 0.59 -24.90 16 7 Si 0.90 21.13 29.57 -169.99 -5.03 16.11 16 8 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 C 0.16 3.12 5.23 -4.04 -0.02 3.10 16 12 C -0.11 -1.99 3.25 -88.47 -0.29 -2.28 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 14 C -0.11 -1.78 5.73 -24.90 -0.14 -1.92 16 15 C 0.10 1.35 6.28 -3.07 -0.02 1.34 16 16 N -0.61 -9.16 3.33 -170.53 -0.57 -9.73 16 17 C 0.56 8.49 7.63 -10.99 -0.08 8.41 16 18 O -0.55 -9.90 16.61 5.56 0.09 -9.81 16 19 C -0.14 -1.71 5.11 -91.77 -0.47 -2.18 16 20 H 0.12 1.36 7.74 -51.93 -0.40 0.96 16 21 C -0.10 -1.12 6.58 -91.48 -0.60 -1.73 16 22 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 23 C -0.07 -0.72 5.94 -104.45 -0.62 -1.34 16 24 C -0.10 -0.98 10.04 -39.46 -0.40 -1.38 16 25 C -0.12 -1.07 10.05 -39.66 -0.40 -1.47 16 26 C -0.12 -0.96 10.05 -39.66 -0.40 -1.36 16 27 C -0.11 -0.94 10.04 -39.46 -0.40 -1.33 16 28 C -0.09 -0.90 6.11 -104.45 -0.64 -1.54 16 29 C -0.06 -0.47 6.57 -27.52 -0.18 -0.65 16 30 C -0.12 -1.32 6.54 -90.17 -0.59 -1.91 16 31 H 0.13 1.49 7.83 -51.93 -0.41 1.08 16 32 C 0.11 1.69 6.38 -2.53 -0.02 1.67 16 33 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 34 H 0.04 1.17 7.19 -51.93 -0.37 0.79 16 35 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 38 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 39 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 40 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 43 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 50 H 0.07 1.15 8.03 -51.93 -0.42 0.73 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -30.32 402.01 -12.56 -42.87 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.23 Total: 0.88 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -4.95 Total: -6.68 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.51 Total: -49.43 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.32 -12.56 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691985519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.138 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds