Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00176 * 2 1 4 4 N 1.34778 * 119.99945 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00264 * 4.75430 * 4 2 1 6 6 C 1.46508 * 119.99875 * 184.75509 * 4 2 1 7 7 C 1.50705 * 109.46821 * 269.99844 * 6 4 2 8 8 O 1.21276 * 120.00031 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99764 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99808 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.50785 * 324.92589 * 10 9 7 12 12 C 1.53121 * 109.50193 * 85.00461 * 10 9 7 13 13 C 1.53124 * 109.16012 * 177.59389 * 12 10 9 14 14 C 1.53036 * 109.27902 * 302.34547 * 13 12 10 15 15 N 1.46847 * 109.52309 * 59.17819 * 14 13 12 16 16 C 1.46903 * 110.99988 * 174.16003 * 15 14 13 17 17 C 1.50700 * 109.46995 * 66.04940 * 16 15 14 18 18 O 1.21298 * 120.00059 * 359.97438 * 17 16 15 19 19 N 1.34781 * 120.00363 * 180.02562 * 17 16 15 20 20 C 1.37087 * 120.00208 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00528 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00066 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99731 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00304 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46957 * 60.00241 * 24 22 20 26 26 H 1.48496 * 109.46945 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47099 * 300.00227 * 24 22 20 28 28 C 1.46843 * 111.19993 * 298.25627 * 15 14 13 29 29 H 1.09006 * 109.46685 * 184.93823 * 1 2 3 30 30 H 1.08993 * 109.47081 * 304.94001 * 1 2 3 31 31 H 1.09003 * 109.47275 * 64.94105 * 1 2 3 32 32 H 1.08994 * 109.47148 * 84.48204 * 5 4 2 33 33 H 1.09002 * 109.47001 * 324.47899 * 5 4 2 34 34 H 1.09007 * 109.46994 * 204.48458 * 5 4 2 35 35 H 1.08993 * 109.47099 * 29.99737 * 6 4 2 36 36 H 1.09000 * 109.47199 * 150.00113 * 6 4 2 37 37 H 0.97001 * 119.99752 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.52061 * 297.50064 * 12 10 9 39 39 H 1.08998 * 109.52515 * 57.69104 * 12 10 9 40 40 H 1.08999 * 109.49881 * 62.28402 * 13 12 10 41 41 H 1.08998 * 109.50229 * 182.36745 * 13 12 10 42 42 H 1.08991 * 109.46397 * 179.19546 * 14 13 12 43 43 H 1.09001 * 109.46200 * 299.17452 * 14 13 12 44 44 H 1.08998 * 109.47392 * 186.04523 * 16 15 14 45 45 H 1.08996 * 109.47418 * 306.04880 * 16 15 14 46 46 H 0.97004 * 119.99226 * 359.97438 * 19 17 16 47 47 H 0.97000 * 119.99860 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.46616 * 301.72998 * 28 15 14 49 49 H 1.09003 * 109.46429 * 181.75660 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4522 -2.4337 -0.1062 6 6 3.6422 -1.1694 0.1047 7 6 4.2451 -1.1107 -1.2753 8 8 3.5252 -1.0705 -2.2504 9 7 5.5844 -1.1019 -1.4255 10 6 6.1706 -1.0454 -2.7669 11 1 5.5468 -1.6088 -3.4608 12 6 6.2571 0.4129 -3.2260 13 6 6.9255 0.4676 -4.6026 14 6 8.3093 -0.1805 -4.5186 15 7 8.1724 -1.5740 -4.0761 16 6 9.4662 -2.2687 -4.1166 17 6 10.3958 -1.6591 -3.0991 18 8 10.0178 -0.7364 -2.4084 19 7 11.6474 -2.1385 -2.9572 20 6 12.4932 -1.5836 -2.0319 21 1 12.1567 -0.7620 -1.4169 22 6 13.7834 -2.0781 -1.8852 23 7 14.1930 -3.0775 -2.6339 24 14 14.9357 -1.3226 -0.6240 25 1 14.3435 -1.4578 0.7311 26 1 16.2432 -2.0252 -0.6646 27 1 15.1359 0.1155 -0.9354 28 6 7.5764 -1.6496 -2.7362 29 1 -0.3633 -1.0239 0.0885 30 1 -0.3633 0.5885 0.8424 31 1 -0.3634 0.4353 -0.9309 32 1 1.2595 -2.6555 -1.1558 33 1 0.5055 -2.3539 0.4281 34 1 2.0495 -3.2341 0.3306 35 1 3.9663 -0.3023 0.6800 36 1 3.9690 -2.0807 0.6055 37 1 6.1602 -1.1337 -0.6455 38 1 5.2540 0.8344 -3.2910 39 1 6.8482 0.9853 -2.5111 40 1 6.3140 -0.0723 -5.3256 41 1 7.0280 1.5064 -4.9162 42 1 8.7820 -0.1560 -5.5003 43 1 8.9245 0.3681 -3.8054 44 1 9.3192 -3.3242 -3.8880 45 1 9.9009 -2.1695 -5.1112 46 1 11.9497 -2.8761 -3.5098 47 1 15.0938 -3.4225 -2.5318 48 1 8.1951 -1.0940 -2.0315 49 1 7.5168 -2.6921 -2.4235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692116744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -121.059859 kcal Electronic energy + Delta-G solvation = -30253.998531 eV Core-core repulsion = 26022.246380 eV Total energy + Delta-G solvation = -4231.752151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55451 -40.98934 -40.09790 -38.74315 -36.56787 -36.11902 -35.51941 -33.79449 -33.25807 -31.98021 -30.67115 -28.97018 -28.59753 -26.94465 -26.51709 -24.14311 -23.89167 -21.81628 -21.28530 -20.90981 -20.25834 -19.79946 -18.48464 -18.14774 -17.77038 -17.67159 -16.98322 -16.58792 -16.46404 -16.24301 -16.00311 -15.89909 -15.67244 -15.59012 -15.06589 -14.83541 -14.49344 -14.41017 -14.25306 -14.00201 -13.77262 -13.64081 -13.48105 -13.32995 -13.18801 -13.01718 -12.99287 -12.55368 -12.48623 -12.45224 -12.26822 -12.14897 -11.89439 -11.82621 -11.55934 -11.35646 -11.18088 -10.97454 -10.95638 -10.11353 -9.99563 -9.75538 -9.03070 -8.46512 -5.96083 1.36887 1.40333 1.45507 1.50400 1.58093 1.86972 2.00875 2.27779 2.29525 3.06124 3.19636 3.25014 3.66238 3.68823 3.82503 3.90976 4.02120 4.14221 4.16569 4.24903 4.35629 4.40248 4.42228 4.45193 4.50269 4.52188 4.61096 4.66049 4.69436 4.73290 4.90418 4.92993 4.93835 5.01378 5.10880 5.11821 5.16486 5.31954 5.34586 5.40249 5.45357 5.88075 6.03998 6.06071 6.30578 6.49225 6.58348 7.08399 7.11094 7.19823 7.54855 8.09185 8.68442 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002209 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.218193 B =12672.535435 C =13382.006505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.601 6.601 4 N -0.602 5.602 5 C 0.071 3.929 6 C 0.095 3.905 7 C 0.496 3.504 8 O -0.574 6.574 9 N -0.716 5.716 10 C 0.164 3.836 11 H 0.078 0.922 12 C -0.122 4.122 13 C -0.102 4.102 14 C 0.042 3.958 15 N -0.503 5.503 16 C 0.051 3.949 17 C 0.408 3.592 18 O -0.619 6.619 19 N -0.568 5.568 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.274 1.274 28 C 0.037 3.963 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.411 0.589 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.063 0.937 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.487 -3.044 3.944 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.334 5.334 5 C -0.070 4.070 6 C -0.032 4.032 7 C 0.283 3.717 8 O -0.453 6.453 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.096 0.904 12 C -0.161 4.161 13 C -0.140 4.140 14 C -0.086 4.086 15 N -0.225 5.225 16 C -0.081 4.081 17 C 0.195 3.805 18 O -0.507 6.507 19 N -0.204 5.204 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.558 5.558 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.200 1.200 28 C -0.091 4.091 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.168 0.832 37 H 0.247 0.753 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.099 -2.251 3.363 24.437 hybrid contribution 2.109 0.491 0.956 2.367 sum -21.990 -1.760 4.319 22.479 Atomic orbital electron populations 1.22012 0.88012 1.06934 1.05723 1.21733 0.92642 0.82513 0.73794 1.90700 1.72078 1.33222 1.52193 1.47704 1.05492 1.08118 1.72081 1.22195 0.98672 0.83570 1.02571 1.21486 0.81561 1.07405 0.92750 1.21768 0.82106 0.74832 0.93024 1.90656 1.61264 1.50913 1.42508 1.45978 1.06775 1.74588 1.09473 1.20673 0.93618 0.95848 0.84001 0.90365 1.21845 0.99819 0.96548 0.97858 1.21453 0.95198 1.00993 0.96355 1.22249 0.97421 0.88549 1.00342 1.62418 1.20449 1.15250 1.24401 1.22145 0.87611 0.99696 0.98643 1.22095 0.83792 0.86372 0.88230 1.90398 1.76033 1.33224 1.51055 1.42119 1.11308 1.32405 1.34613 1.19593 0.94133 1.16474 1.15923 0.90317 1.26017 0.98711 0.96626 0.99901 1.69664 1.20057 1.25734 1.40372 0.85035 0.77240 0.78163 0.78199 1.19651 1.19646 1.19958 1.22444 0.93694 1.01216 0.91772 0.86810 0.87640 0.88731 0.93034 0.87483 0.88662 0.87426 0.83159 0.75272 0.93001 0.93090 0.90674 0.90300 0.90195 0.94688 0.86970 0.87012 0.77012 0.91313 0.91932 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.05 71.24 0.72 -1.21 16 2 C 0.50 11.05 7.77 87.66 0.68 11.73 16 3 O -0.60 -19.64 16.73 -3.04 -0.05 -19.69 16 4 N -0.60 -10.50 2.36 -851.10 -2.01 -12.51 16 5 C 0.07 0.61 10.12 127.77 1.29 1.91 16 6 C 0.09 1.69 5.89 85.63 0.50 2.19 16 7 C 0.50 12.83 7.86 87.66 0.69 13.51 16 8 O -0.57 -19.40 16.10 -3.02 -0.05 -19.45 16 9 N -0.72 -17.75 5.08 -442.28 -2.25 -20.00 16 10 C 0.16 4.78 2.62 45.05 0.12 4.89 16 11 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 12 C -0.12 -3.72 5.58 30.68 0.17 -3.55 16 13 C -0.10 -2.86 6.09 30.65 0.19 -2.67 16 14 C 0.04 1.36 5.10 86.33 0.44 1.80 16 15 N -0.50 -15.91 4.86 -900.94 -4.38 -20.29 16 16 C 0.05 1.66 5.86 85.56 0.50 2.16 16 17 C 0.41 17.97 7.20 87.66 0.63 18.60 16 18 O -0.62 -30.82 11.20 -3.09 -0.03 -30.86 16 19 N -0.57 -27.73 5.29 -306.98 -1.62 -29.35 16 20 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 21 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 23 N -0.92 -48.38 13.05 21.67 0.28 -48.10 16 24 Si 0.99 41.99 29.55 68.60 2.03 44.02 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.04 1.17 4.44 86.33 0.38 1.56 16 29 H 0.11 0.51 5.39 -2.38 -0.01 0.50 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.26 5.97 -2.39 -0.01 0.25 16 34 H 0.09 0.45 7.83 -2.38 -0.02 0.43 16 35 H 0.11 2.07 7.49 -2.39 -0.02 2.06 16 36 H 0.15 1.34 7.86 -2.39 -0.02 1.32 16 37 H 0.41 8.46 8.60 -92.71 -0.80 7.66 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.33 8.06 -2.39 -0.02 2.32 16 43 H 0.03 1.38 6.00 -2.39 -0.01 1.37 16 44 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.11 3.25 8.06 -2.39 -0.02 3.23 16 46 H 0.40 18.53 7.90 -92.71 -0.73 17.79 16 47 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.06 2.40 5.36 -2.39 -0.01 2.38 16 49 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -78.80 394.12 -1.03 -79.83 By element: Atomic # 1 Polarization: 43.49 SS G_CDS: -0.54 Total: 42.95 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 7.60 Total: 33.45 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -9.97 Total: -130.25 kcal Atomic # 8 Polarization: -69.86 SS G_CDS: -0.13 Total: -70.00 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -78.80 -1.03 -79.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692116744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.231 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds