Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 119.99783 * 2 1 4 4 N 1.34770 * 119.99989 * 180.02562 * 2 1 3 5 5 C 1.46508 * 120.00235 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47234 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47052 * 59.99849 * 6 5 4 8 8 C 1.53002 * 109.47091 * 299.99688 * 6 5 4 9 9 C 1.50700 * 109.46746 * 180.02562 * 6 5 4 10 10 O 1.21274 * 120.00250 * 359.97438 * 9 6 5 11 11 N 1.34784 * 119.99706 * 180.02562 * 9 6 5 12 12 C 1.46493 * 119.99875 * 179.97438 * 11 9 6 13 13 C 1.53514 * 114.17020 * 154.99833 * 12 11 9 14 14 N 1.47482 * 87.93039 * 87.81444 * 13 12 11 15 15 C 1.46901 * 110.99764 * 138.70591 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.47480 * 87.83699 * 27.01095 * 14 13 12 28 28 H 1.08991 * 109.47372 * 269.99829 * 1 2 3 29 29 H 1.09006 * 109.47055 * 29.99929 * 1 2 3 30 30 H 1.09001 * 109.46748 * 149.99139 * 1 2 3 31 31 H 0.96998 * 119.99968 * 359.97438 * 4 2 1 32 32 H 1.08995 * 109.46825 * 59.99658 * 5 4 2 33 33 H 1.09003 * 109.46613 * 300.00162 * 5 4 2 34 34 H 1.09004 * 109.46847 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47431 * 300.00120 * 7 6 5 36 36 H 1.09002 * 109.46803 * 60.00452 * 7 6 5 37 37 H 1.08995 * 109.47445 * 300.00410 * 8 6 5 38 38 H 1.09005 * 109.46802 * 60.00530 * 8 6 5 39 39 H 1.08999 * 109.46771 * 179.97438 * 8 6 5 40 40 H 0.96998 * 120.00008 * 359.97438 * 11 9 6 41 41 H 1.08998 * 113.25916 * 22.04852 * 12 11 9 42 42 H 1.08994 * 113.47382 * 333.04288 * 13 12 11 43 43 H 1.09003 * 113.47448 * 202.58196 * 13 12 11 44 44 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 45 45 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.47664 * 87.75895 * 27 14 13 49 49 H 1.08994 * 113.47488 * 218.22090 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6460 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0001 7 6 3.6463 -3.3307 -1.2497 8 6 3.6455 -3.3312 1.2489 9 6 5.6629 -2.6096 0.0011 10 8 6.2693 -1.5594 0.0016 11 7 6.3368 -3.7769 0.0007 12 6 7.8018 -3.7769 0.0013 13 6 8.4301 -5.0466 0.5928 14 7 8.3576 -5.6450 -0.7532 15 6 9.5771 -6.4054 -1.0576 16 6 9.3719 -7.1986 -2.3224 17 8 8.3140 -7.1362 -2.9125 18 7 10.3643 -7.9765 -2.7985 19 6 10.1777 -8.6977 -3.9494 20 1 9.2355 -8.6427 -4.4744 21 6 11.2005 -9.5000 -4.4399 22 7 12.3469 -9.5673 -3.8009 23 14 10.9468 -10.4821 -6.0085 24 1 11.3633 -9.6655 -7.1768 25 1 11.7633 -11.7213 -5.9543 26 1 9.5117 -10.8404 -6.1414 27 6 8.4351 -4.2791 -1.3038 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5140 31 1 1.6959 -2.0072 -0.0005 32 1 4.0089 -0.6539 0.8905 33 1 4.0096 -0.6527 -0.8895 34 1 4.0101 -4.3582 -1.2500 35 1 2.5564 -3.3306 -1.2501 36 1 4.0101 -2.8166 -2.1394 37 1 4.0084 -2.8176 2.1391 38 1 2.5554 -3.3312 1.2484 39 1 4.0084 -4.3590 1.2485 40 1 5.8518 -4.6169 0.0000 41 1 8.2320 -2.8489 0.3780 42 1 7.7946 -5.5451 1.3246 43 1 9.4500 -4.9009 0.9489 44 1 9.7966 -7.0850 -0.2341 45 1 10.4108 -5.7163 -1.1920 46 1 11.2103 -8.0261 -2.3268 47 1 13.0611 -10.1271 -4.1436 48 1 9.4563 -3.9287 -1.4538 49 1 7.8039 -4.1273 -2.1792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692241505.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -75.431677 kcal Electronic energy + Delta-G solvation = -29449.346694 eV Core-core repulsion = 25219.573129 eV Total energy + Delta-G solvation = -4229.773565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02059 -40.12033 -39.29517 -37.77042 -36.54880 -34.29750 -33.88154 -33.26068 -31.26994 -30.37528 -29.66374 -27.81396 -26.46252 -25.96310 -25.72011 -24.00978 -22.92551 -20.94394 -19.92555 -19.82579 -19.20582 -17.91921 -17.56364 -16.93945 -16.26925 -16.12289 -16.05747 -15.93774 -15.42601 -15.21766 -15.02644 -14.64517 -14.34202 -14.19730 -14.02985 -13.74097 -13.68061 -13.32637 -13.14492 -12.95240 -12.90774 -12.62861 -12.59605 -12.51809 -12.17203 -12.11059 -11.62186 -11.54271 -11.45242 -11.36939 -11.17743 -11.06801 -10.72334 -10.40866 -10.25910 -10.23026 -9.91735 -9.51448 -9.42287 -9.16227 -8.85704 -8.23544 -7.97453 -6.42970 -3.83819 2.32906 2.39270 2.62945 3.12907 3.16409 3.25044 3.30699 3.88440 3.97114 4.08165 4.21044 4.28860 4.33930 4.44597 4.46973 4.67006 4.80710 4.81752 4.97363 4.98216 5.08633 5.17119 5.22802 5.31070 5.32737 5.34358 5.38163 5.42815 5.43659 5.54212 5.58178 5.63013 5.66463 5.68709 5.75650 5.82065 5.98242 6.04840 6.22911 6.38715 6.47571 7.06845 7.11933 7.35493 7.53707 7.88717 8.02635 8.04625 8.60696 9.17136 9.53312 10.05522 10.74843 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.001832 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.277842 B =15279.724050 C =16028.433364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.508 3.492 3 O -0.544 6.544 4 N -0.730 5.730 5 C 0.143 3.857 6 C -0.094 4.094 7 C -0.144 4.144 8 C -0.142 4.142 9 C 0.530 3.470 10 O -0.537 6.537 11 N -0.695 5.695 12 C 0.116 3.884 13 C -0.014 4.014 14 N -0.440 5.440 15 C 0.008 3.992 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.008 4.008 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.077 0.923 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 12.084 12.945 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.421 6.421 4 N -0.384 5.384 5 C 0.019 3.981 6 C -0.097 4.097 7 C -0.202 4.202 8 C -0.200 4.200 9 C 0.315 3.685 10 O -0.413 6.413 11 N -0.345 5.345 12 C 0.009 3.991 13 C -0.144 4.144 14 N -0.162 5.162 15 C -0.124 4.124 16 C 0.231 3.769 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.138 4.138 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.235 0.765 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.331 13.040 12.297 25.637 hybrid contribution 0.998 -1.171 -0.375 1.584 sum -17.332 11.869 11.922 24.154 Atomic orbital electron populations 1.21885 0.91594 1.04949 1.04768 1.20813 0.90600 0.83412 0.75690 1.90757 1.70808 1.31407 1.49151 1.46140 1.07390 1.08838 1.75994 1.21092 0.79030 0.94017 1.03957 1.20980 0.92697 0.97276 0.98775 1.21915 1.01535 1.00970 0.95777 1.21898 1.01684 1.00622 0.95790 1.20183 0.88991 0.83763 0.75541 1.90733 1.70047 1.31238 1.49323 1.45456 1.06063 1.08807 1.74210 1.21985 0.80667 0.99057 0.97389 1.24291 1.00995 0.94200 0.94893 1.68827 1.33868 1.10268 1.03227 1.22509 0.92127 0.98641 0.99163 1.19655 0.85627 0.84379 0.87202 1.90517 1.26821 1.67789 1.60823 1.41875 1.14192 1.40150 1.24167 1.19686 1.01120 1.21194 1.00803 0.87988 1.25251 0.94973 0.98166 0.99579 1.69612 1.04180 1.40462 1.40148 0.85863 0.78483 0.78776 0.81197 1.20436 1.20921 1.19441 1.24367 1.00958 0.89558 0.98956 0.88856 0.88840 0.90174 0.76495 0.90541 0.90428 0.90950 0.91433 0.91417 0.91605 0.91391 0.91250 0.75544 0.87182 0.89282 0.90090 0.89352 0.92110 0.77561 0.91901 0.90464 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.30 36.01 0.37 -0.38 16 2 C 0.51 4.47 7.94 -10.99 -0.09 4.38 16 3 O -0.54 -7.67 17.10 5.56 0.10 -7.58 16 4 N -0.73 -5.00 4.96 -60.29 -0.30 -5.30 16 5 C 0.14 1.35 3.85 -4.04 -0.02 1.33 16 6 C -0.09 -0.73 0.63 -155.66 -0.10 -0.82 16 7 C -0.14 -0.99 8.20 37.16 0.30 -0.68 16 8 C -0.14 -0.77 8.20 37.16 0.30 -0.46 16 9 C 0.53 5.86 6.48 -10.98 -0.07 5.79 16 10 O -0.54 -8.00 15.57 5.56 0.09 -7.91 16 11 N -0.69 -7.15 5.18 -53.54 -0.28 -7.43 16 12 C 0.12 1.31 4.59 -67.72 -0.31 0.99 16 13 C -0.01 -0.15 7.45 -7.54 -0.06 -0.20 16 14 N -0.44 -6.66 5.82 -246.09 -1.43 -8.09 16 15 C 0.01 0.13 5.30 -4.97 -0.03 0.10 16 16 C 0.45 10.41 7.85 -10.98 -0.09 10.33 16 17 O -0.58 -15.57 16.01 5.55 0.09 -15.48 16 18 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 19 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 C -0.01 -0.11 7.53 -7.54 -0.06 -0.17 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.40 1.49 6.16 -40.82 -0.25 1.23 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 35 H 0.07 0.31 6.86 -51.93 -0.36 -0.05 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.24 6.86 -51.93 -0.36 -0.12 16 39 H 0.07 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.41 3.74 7.60 -40.82 -0.31 3.43 16 41 H 0.11 1.26 7.45 -51.93 -0.39 0.87 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 44 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 45 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 49 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 404.67 15.07 6.10 6.10 Total: -1.00 -36.85 404.67 -7.74 -44.59 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.67 Total: 10.87 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -0.07 Total: 12.26 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -1.34 Total: -58.80 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: 0.27 Total: -30.97 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.85 -7.74 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692241505.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.838 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds