Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47323 * 2 1 4 4 C 1.34774 * 119.99775 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00307 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99559 * 179.97438 * 4 3 2 7 7 C 1.53008 * 109.47069 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47069 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00134 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99924 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00049 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47321 * 179.97438 * 11 10 8 13 13 C 1.53510 * 114.17337 * 175.00036 * 12 11 10 14 14 N 1.47482 * 87.93436 * 139.67421 * 13 12 11 15 15 C 1.46901 * 110.99764 * 221.29834 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47484 * 87.83324 * 332.98752 * 14 13 12 28 28 H 1.09004 * 109.47438 * 300.00467 * 1 2 3 29 29 H 1.09005 * 109.46811 * 60.00234 * 1 2 3 30 30 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47091 * 239.99595 * 2 1 3 32 32 H 1.09005 * 109.46811 * 119.99766 * 2 1 3 33 33 H 0.97001 * 119.99651 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47156 * 60.00307 * 6 4 3 35 35 H 1.09005 * 109.47414 * 300.00068 * 6 4 3 36 36 H 1.08997 * 109.46947 * 60.00098 * 7 6 4 37 37 H 1.08998 * 109.46879 * 300.00601 * 7 6 4 38 38 H 0.96999 * 119.99506 * 359.97438 * 10 8 7 39 39 H 1.09011 * 109.47206 * 60.00018 * 11 10 8 40 40 H 1.08998 * 109.47548 * 299.99873 * 11 10 8 41 41 H 1.09000 * 113.25471 * 42.05042 * 12 11 10 42 42 H 1.08999 * 113.47482 * 24.90332 * 13 12 11 43 43 H 1.09004 * 113.47828 * 254.43977 * 13 12 11 44 44 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 45 45 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.46980 * 141.77763 * 27 14 13 49 49 H 1.08997 * 113.47937 * 272.24324 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8457 3.0482 -0.0001 7 6 5.3758 3.0482 0.0001 8 6 5.8782 4.4690 -0.0012 9 8 5.0900 5.3909 -0.0016 10 7 7.2032 4.7153 -0.0018 11 6 7.6916 6.0964 -0.0024 12 6 9.2216 6.0964 -0.0024 13 6 9.8502 7.4916 -0.1251 14 7 10.8535 7.0684 0.8696 15 6 11.1247 8.1432 1.8337 16 6 11.9577 7.6026 2.9673 17 8 12.2929 6.4369 2.9713 18 7 12.3311 8.4148 3.9760 19 6 13.0894 7.9232 5.0070 20 1 13.3871 6.8850 5.0110 21 6 13.4739 8.7602 6.0472 22 7 13.1111 10.0233 6.0425 23 14 14.5076 8.0906 7.4516 24 1 14.7810 6.6493 7.2215 25 1 15.7915 8.8338 7.5194 26 1 13.7716 8.2563 8.7307 27 6 9.8502 6.1254 1.3979 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.3880 2.1185 -0.0004 34 1 3.4820 3.5626 0.8894 35 1 3.4829 3.5616 -0.8905 36 1 5.7392 2.5340 -0.8897 37 1 5.7390 2.5347 0.8902 38 1 7.8335 3.9780 -0.0011 39 1 7.3286 6.6106 0.8877 40 1 7.3279 6.6100 -0.8924 41 1 9.6519 5.3525 -0.6728 42 1 9.2007 8.2929 0.2271 43 1 10.2727 7.6925 -1.1096 44 1 10.1824 8.5260 2.2257 45 1 11.6657 8.9487 1.3371 46 1 12.0634 9.3470 3.9725 47 1 13.3799 10.6078 6.7685 48 1 10.2727 5.1684 1.7040 49 1 9.2007 6.5622 2.1564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692288526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -116.342045 kcal Electronic energy + Delta-G solvation = -28073.939694 eV Core-core repulsion = 23842.392122 eV Total energy + Delta-G solvation = -4231.547572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58691 -41.00050 -40.27488 -39.54632 -36.33532 -36.05460 -35.75070 -33.97557 -33.33467 -32.19003 -31.35658 -28.92553 -27.06935 -26.86215 -26.04268 -23.95162 -23.32783 -21.76219 -21.28825 -21.01490 -20.46931 -19.90500 -18.63881 -17.85065 -17.43909 -17.27622 -17.20660 -16.84757 -16.62676 -16.51583 -16.41500 -16.10018 -15.84996 -15.40561 -15.26117 -14.94452 -14.73752 -14.40721 -14.14994 -13.87946 -13.62156 -13.53459 -13.39260 -13.34247 -13.08330 -12.93123 -12.85011 -12.69497 -12.43780 -12.38139 -12.32510 -12.15800 -12.13257 -11.84060 -11.56218 -11.46890 -10.95379 -10.90645 -10.35204 -10.11184 -10.07474 -10.03215 -9.76567 -8.48545 -5.97423 1.35043 1.40402 1.54588 1.60768 1.64034 2.00105 2.02800 2.27500 2.43707 2.86976 3.17846 3.26316 3.44770 3.60118 3.74229 3.96285 4.05811 4.12245 4.17676 4.20363 4.22688 4.23699 4.30412 4.40468 4.49171 4.51674 4.51764 4.63946 4.67101 4.73020 4.85650 4.86584 4.89640 4.94356 4.97995 5.05335 5.22620 5.26230 5.36327 5.40026 5.47090 5.49428 5.90053 6.08153 6.51075 6.55598 6.58271 7.10947 7.21395 7.24998 7.53822 8.09654 8.69135 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.001510 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.407798 B =18536.918760 C =19617.150783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.722 5.722 4 C 0.512 3.488 5 O -0.584 6.584 6 C -0.118 4.118 7 C -0.120 4.120 8 C 0.514 3.486 9 O -0.581 6.581 10 N -0.721 5.721 11 C 0.137 3.863 12 C -0.105 4.105 13 C 0.011 3.989 14 N -0.475 5.475 15 C 0.022 3.978 16 C 0.439 3.561 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.011 3.989 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.064 0.936 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.272 -11.400 -15.994 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.015 4.015 3 N -0.376 5.376 4 C 0.299 3.701 5 O -0.464 6.464 6 C -0.158 4.158 7 C -0.161 4.161 8 C 0.302 3.698 9 O -0.461 6.461 10 N -0.372 5.372 11 C 0.013 3.987 12 C -0.124 4.124 13 C -0.118 4.118 14 N -0.197 5.197 15 C -0.110 4.110 16 C 0.227 3.773 17 O -0.505 6.505 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.328 -12.225 -16.039 31.600 hybrid contribution 0.010 0.674 1.393 1.547 sum -24.318 -11.551 -14.646 30.648 Atomic orbital electron populations 1.21961 0.92075 1.04114 1.03305 1.21370 0.96131 0.82545 1.01416 1.46055 1.06869 1.09888 1.74739 1.20989 0.82612 0.91711 0.74771 1.90706 1.56416 1.47861 1.51465 1.21330 0.95325 0.92464 1.06720 1.21338 0.95863 0.92318 1.06542 1.20950 0.82193 0.91837 0.74799 1.90690 1.56126 1.47709 1.51574 1.45988 1.07194 1.09456 1.74598 1.21256 0.91961 0.83188 1.02320 1.22883 0.93395 0.99373 0.96728 1.23934 0.92825 0.96363 0.98702 1.68823 1.30943 1.10255 1.09685 1.22385 0.99764 0.96001 0.92860 1.20772 0.84987 0.86667 0.84901 1.90488 1.60921 1.19134 1.79960 1.41946 1.47278 1.12110 1.19799 1.19692 1.29417 0.96833 1.00418 0.90450 1.26024 0.98880 0.95368 1.00862 1.69678 1.46617 1.05194 1.34618 0.84876 0.77936 0.78151 0.77402 1.19878 1.19515 1.19551 1.23790 0.92818 0.98510 0.96737 0.91268 0.91066 0.89962 0.92450 0.92716 0.74674 0.87486 0.86967 0.87155 0.87867 0.74882 0.92423 0.90114 0.86042 0.89643 0.87584 0.90506 0.87220 0.77026 0.91277 0.91734 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.03 71.98 0.72 0.10 16 2 C 0.11 1.10 6.39 86.38 0.55 1.65 16 3 N -0.72 -7.41 5.56 -463.05 -2.57 -9.99 16 4 C 0.51 8.10 7.83 87.66 0.69 8.79 16 5 O -0.58 -14.06 15.98 -3.04 -0.05 -14.10 16 6 C -0.12 -1.51 4.99 29.85 0.15 -1.36 16 7 C -0.12 -1.73 4.99 29.85 0.15 -1.58 16 8 C 0.51 9.59 7.83 87.66 0.69 10.28 16 9 O -0.58 -14.71 15.98 -3.04 -0.05 -14.76 16 10 N -0.72 -11.72 5.56 -463.06 -2.57 -14.30 16 11 C 0.14 2.43 5.58 86.38 0.48 2.91 16 12 C -0.10 -2.00 4.09 -10.45 -0.04 -2.04 16 13 C 0.01 0.22 7.29 83.57 0.61 0.83 16 14 N -0.47 -14.94 6.06 -932.44 -5.65 -20.59 16 15 C 0.02 0.75 5.31 85.56 0.45 1.20 16 16 C 0.44 21.30 7.62 87.66 0.67 21.97 16 17 O -0.62 -34.90 15.34 -3.07 -0.05 -34.95 16 18 N -0.57 -29.90 5.29 -306.98 -1.62 -31.53 16 19 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 22 N -0.92 -49.97 13.05 21.66 0.28 -49.69 16 23 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.01 0.31 6.28 83.57 0.53 0.83 16 28 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.42 1.85 8.47 -92.71 -0.79 1.07 16 34 H 0.11 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.11 1.21 8.10 -2.38 -0.02 1.19 16 36 H 0.11 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.41 5.13 8.47 -92.71 -0.79 4.35 16 39 H 0.06 1.21 7.81 -2.38 -0.02 1.19 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 1.53 7.73 -2.39 -0.02 1.52 16 43 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.08 2.33 7.56 -2.39 -0.02 2.31 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 47 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 49 H 0.06 1.81 7.43 -2.39 -0.02 1.79 16 Total: -1.00 -80.36 411.75 -4.65 -85.01 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -1.32 Total: 34.52 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 6.92 Total: 24.99 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -12.14 Total: -126.09 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -0.14 Total: -63.81 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -80.36 -4.65 -85.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692288526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -80.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds