Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35767 * 117.00653 * 2 1 4 4 C 1.35590 * 126.08759 * 183.15027 * 3 2 1 5 5 C 1.41053 * 107.80028 * 179.90628 * 4 3 2 6 6 C 1.47719 * 125.98294 * 180.18068 * 5 4 3 7 7 O 1.21571 * 120.00129 * 352.84814 * 6 5 4 8 8 N 1.34781 * 120.00036 * 172.85369 * 6 5 4 9 9 C 1.46495 * 120.00006 * 3.22321 * 8 6 5 10 10 C 1.46502 * 120.00144 * 183.22973 * 8 6 5 11 11 C 1.52998 * 109.47246 * 89.99728 * 10 8 6 12 12 O 1.42900 * 109.47341 * 65.00094 * 11 10 8 13 13 C 1.42893 * 114.00196 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47219 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47179 * 65.00101 * 14 13 12 16 16 C 1.46501 * 119.99954 * 270.00368 * 15 14 13 17 17 C 1.36941 * 120.00392 * 89.99918 * 15 14 13 18 18 H 1.07997 * 119.99284 * 29.86109 * 17 15 14 19 19 C 1.38812 * 120.00460 * 209.86338 * 17 15 14 20 20 N 1.31618 * 119.99761 * 7.24835 * 19 17 15 21 21 Si 1.86797 * 120.00081 * 187.25084 * 19 17 15 22 22 H 1.48494 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47265 * 119.99822 * 21 19 17 24 24 H 1.48508 * 109.46863 * 239.99775 * 21 19 17 25 25 N 1.31868 * 108.03470 * 0.35760 * 5 4 3 26 26 N 1.35839 * 126.08112 * 3.45746 * 3 2 1 27 27 C 1.46501 * 125.95000 * 359.96180 * 26 3 2 28 28 H 1.08998 * 109.47493 * 188.82174 * 1 2 3 29 29 H 1.09008 * 109.46808 * 308.82009 * 1 2 3 30 30 H 1.08994 * 109.47068 * 68.81576 * 1 2 3 31 31 H 1.07997 * 126.09854 * 0.03077 * 4 3 2 32 32 H 1.09007 * 109.47063 * 84.05354 * 9 8 6 33 33 H 1.08998 * 109.47410 * 204.05053 * 9 8 6 34 34 H 1.09001 * 109.47285 * 324.05881 * 9 8 6 35 35 H 1.08994 * 109.46829 * 210.00127 * 10 8 6 36 36 H 1.09007 * 109.46766 * 329.99719 * 10 8 6 37 37 H 1.09001 * 109.46930 * 185.00405 * 11 10 8 38 38 H 1.09008 * 109.46873 * 305.00102 * 11 10 8 39 39 H 1.09005 * 109.47249 * 300.00285 * 13 12 11 40 40 H 1.09008 * 109.47158 * 59.99981 * 13 12 11 41 41 H 1.08997 * 109.47281 * 184.99933 * 14 13 12 42 42 H 1.09001 * 109.46926 * 305.00102 * 14 13 12 43 43 H 1.09001 * 109.47482 * 94.42095 * 16 15 14 44 44 H 1.09009 * 109.47222 * 214.41746 * 16 15 14 45 45 H 1.09000 * 109.47101 * 334.41696 * 16 15 14 46 46 H 0.97001 * 119.99962 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.47053 * 82.30489 * 27 26 3 48 48 H 1.08998 * 109.47146 * 202.30523 * 27 26 3 49 49 H 1.08995 * 109.47258 * 322.31016 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2096 0.0000 4 6 3.3829 1.4244 -0.0602 5 6 3.5973 2.8184 -0.0381 6 6 4.9090 3.4957 -0.0900 7 8 5.9329 2.8434 -0.0274 8 7 4.9706 4.8371 -0.2067 9 6 3.7384 5.6293 -0.2109 10 6 6.2698 5.5028 -0.3294 11 6 6.6488 5.6130 -1.8076 12 8 5.7204 6.4703 -2.4748 13 6 5.9859 6.6423 -3.8682 14 6 4.9358 7.5741 -4.4763 15 7 5.0690 8.9094 -3.8888 16 6 4.3193 9.2552 -2.6785 17 6 5.8942 9.8344 -4.4707 18 1 6.0626 9.8124 -5.5372 19 6 6.5141 10.8002 -3.6898 20 7 6.4250 10.7425 -2.3779 21 14 7.4748 12.1817 -4.5008 22 1 7.4236 12.0205 -5.9761 23 1 6.8771 13.4879 -4.1241 24 1 8.8880 12.1347 -4.0469 25 7 2.4219 3.4109 0.0409 26 7 1.4324 2.4200 0.0662 27 6 -0.0122 2.6490 0.1495 28 1 -0.3634 -1.0155 0.1576 29 1 -0.3633 0.6443 0.8007 30 1 -0.3633 0.3713 -0.9582 31 1 4.1476 0.6638 -0.1172 32 1 3.4273 5.8228 0.8158 33 1 3.9167 6.5760 -0.7209 34 1 2.9541 5.0787 -0.7304 35 1 6.2094 6.5003 0.1056 36 1 7.0269 4.9219 0.1975 37 1 7.6533 6.0270 -1.8952 38 1 6.6226 4.6235 -2.2641 39 1 6.9766 7.0779 -3.9983 40 1 5.9463 5.6742 -4.3679 41 1 5.0848 7.6350 -5.5544 42 1 3.9396 7.1834 -4.2687 43 1 4.9440 9.0819 -1.8022 44 1 4.0312 10.3058 -2.7173 45 1 3.4250 8.6353 -2.6155 46 1 6.8579 11.4176 -1.8322 47 1 -0.3380 2.5417 1.1841 48 1 -0.2413 3.6553 -0.2012 49 1 -0.5320 1.9203 -0.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692304091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = 24.930845 kcal Electronic energy + Delta-G solvation = -30524.592365 eV Core-core repulsion = 26299.170845 eV Total energy + Delta-G solvation = -4225.421520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88811 -39.70987 -38.44701 -37.35427 -35.57466 -34.84849 -33.77645 -31.52575 -30.75993 -29.60029 -28.30179 -27.92248 -26.75348 -26.17624 -25.65099 -23.77440 -22.88440 -21.88459 -21.55255 -20.24280 -19.28117 -17.98609 -17.08075 -16.86790 -16.59204 -16.27609 -15.79528 -15.70156 -15.54057 -15.14558 -14.97875 -14.76493 -14.52000 -14.18588 -13.85398 -13.69736 -13.40245 -13.29101 -13.22087 -12.87339 -12.71516 -12.36974 -12.19207 -11.87368 -11.80273 -11.71557 -11.38772 -11.28891 -10.89413 -10.80920 -10.73397 -10.59601 -10.43233 -10.03604 -10.00751 -9.83895 -9.77468 -9.41983 -8.81121 -8.68297 -8.47799 -8.44049 -6.53310 -5.62780 -3.15582 1.19821 1.85225 1.99167 2.50035 3.13339 3.37461 3.40623 3.47962 3.49655 3.89979 4.28308 4.35271 4.39913 4.56357 4.57474 4.60475 4.74494 4.98151 5.05643 5.10273 5.44781 5.45094 5.49035 5.58204 5.66048 5.67855 5.69024 5.81058 5.86398 5.95037 6.05082 6.09330 6.22391 6.29513 6.34828 6.41259 6.65463 6.68045 6.87445 6.97924 6.98613 7.13181 7.48117 7.48603 7.88191 7.96132 8.01857 8.18399 8.53763 9.35004 9.96943 10.51299 11.40137 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002363 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.925631 B =11846.566173 C =12398.920385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.289 6.289 3 C 0.268 3.732 4 C -0.235 4.235 5 C 0.064 3.936 6 C 0.593 3.407 7 O -0.534 6.534 8 N -0.586 5.586 9 C 0.077 3.923 10 C 0.120 3.880 11 C 0.048 3.952 12 O -0.365 6.365 13 C 0.046 3.954 14 C 0.154 3.846 15 N -0.595 5.595 16 C 0.172 3.828 17 C -0.257 4.257 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 N -0.239 5.239 26 N -0.398 5.398 27 C 0.077 3.923 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.164 0.836 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.029 0.971 45 H -0.006 1.006 46 H 0.250 0.750 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 -20.061 7.063 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.195 6.195 3 C 0.101 3.899 4 C -0.265 4.265 5 C -0.103 4.103 6 C 0.378 3.622 7 O -0.409 6.409 8 N -0.317 5.317 9 C -0.066 4.066 10 C -0.002 4.002 11 C -0.030 4.030 12 O -0.284 6.284 13 C -0.034 4.034 14 C 0.026 3.974 15 N -0.317 5.317 16 C 0.028 3.972 17 C -0.388 4.388 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 N -0.070 5.070 26 N -0.194 5.194 27 C -0.063 4.063 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.182 0.818 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.013 0.987 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.390 -19.366 7.392 25.234 hybrid contribution 0.840 0.004 -0.522 0.989 sum -13.551 -19.362 6.870 24.611 Atomic orbital electron populations 1.23666 0.78018 1.05288 1.01623 1.86299 1.21592 1.21730 1.89919 1.19578 0.91074 0.78956 1.00269 1.20309 0.92005 0.95557 1.18633 1.21846 0.92838 0.92945 1.02664 1.17012 0.86026 0.81868 0.77271 1.90784 1.34136 1.64952 1.51066 1.47648 1.08760 1.05309 1.69977 1.22184 0.85400 0.97293 1.01740 1.21646 0.84354 0.98458 0.95731 1.22760 0.93661 0.93720 0.92857 1.87930 1.51161 1.67189 1.22147 1.23412 1.01777 0.96977 0.81223 1.20891 0.95136 0.85731 0.95655 1.43795 1.50328 1.07447 1.30157 1.20700 0.90903 0.96162 0.89485 1.19184 1.20923 1.07616 0.91033 0.91908 1.25204 0.98326 1.00368 0.95296 1.70050 1.46427 1.34989 1.02858 0.86265 0.79763 0.82242 0.78749 1.20378 1.21717 1.21761 1.78044 0.95151 1.09825 1.24027 1.49303 1.07216 1.03166 1.59761 1.22504 0.74834 1.05730 1.03267 0.87369 0.91607 0.91867 0.81801 0.92971 0.89207 0.89369 0.88826 0.88664 0.92732 0.94104 0.93457 0.96102 0.92615 0.94053 0.94560 0.95193 0.98718 0.93976 0.90354 0.88127 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.41 101.05 0.95 0.99 16 2 O -0.29 -2.58 10.57 -19.01 -0.20 -2.79 16 3 C 0.27 2.96 7.78 -16.72 -0.13 2.83 16 4 C -0.24 -3.09 10.60 -39.46 -0.42 -3.51 16 5 C 0.06 0.92 6.79 -82.91 -0.56 0.36 16 6 C 0.59 9.57 7.68 -12.38 -0.10 9.47 16 7 O -0.53 -9.72 16.47 5.30 0.09 -9.63 16 8 N -0.59 -9.02 2.84 -182.74 -0.52 -9.54 16 9 C 0.08 1.09 9.35 59.84 0.56 1.65 16 10 C 0.12 1.86 5.81 -4.04 -0.02 1.83 16 11 C 0.05 0.83 6.28 37.16 0.23 1.06 16 12 O -0.37 -7.33 8.84 -35.23 -0.31 -7.64 16 13 C 0.05 0.92 6.28 37.16 0.23 1.15 16 14 C 0.15 3.28 6.11 -4.05 -0.02 3.25 16 15 N -0.59 -15.27 2.87 -181.12 -0.52 -15.79 16 16 C 0.17 4.33 8.63 59.85 0.52 4.85 16 17 C -0.26 -7.16 9.60 -15.06 -0.14 -7.30 16 18 H 0.06 1.72 7.84 -52.49 -0.41 1.30 16 19 C 0.01 0.20 5.21 -17.43 -0.09 0.11 16 20 N -0.90 -26.37 10.84 55.49 0.60 -25.77 16 21 Si 0.90 22.02 29.56 -169.99 -5.02 16.99 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 N -0.24 -3.12 9.09 33.34 0.30 -2.82 16 26 N -0.40 -4.07 4.03 -68.19 -0.28 -4.35 16 27 C 0.08 0.40 9.56 59.85 0.57 0.97 16 28 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.18 5.63 -51.92 -0.29 -0.12 16 30 H 0.06 0.18 6.73 -51.93 -0.35 -0.17 16 31 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.09 1.43 7.24 -51.93 -0.38 1.05 16 34 H 0.09 1.25 5.38 -51.93 -0.28 0.97 16 35 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 36 H 0.10 1.38 7.38 -51.93 -0.38 1.00 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 42 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 43 H 0.04 0.99 7.26 -51.93 -0.38 0.61 16 44 H 0.03 0.80 7.60 -51.92 -0.39 0.40 16 45 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.08 0.27 7.59 -51.93 -0.39 -0.12 16 48 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.26 4.73 -51.93 -0.25 0.01 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -34.97 398.08 -5.95 -40.92 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.67 Total: -3.32 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 1.58 Total: 17.71 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.41 Total: -58.25 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.42 Total: -20.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.97 -5.95 -40.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692304091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.855 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds