Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35767 * 117.00653 * 2 1 4 4 C 1.35590 * 126.08759 * 183.15027 * 3 2 1 5 5 C 1.41053 * 107.80028 * 179.90628 * 4 3 2 6 6 C 1.47719 * 125.98294 * 180.18068 * 5 4 3 7 7 O 1.21571 * 120.00129 * 352.84814 * 6 5 4 8 8 N 1.34781 * 120.00036 * 172.85369 * 6 5 4 9 9 C 1.46495 * 120.00006 * 3.22321 * 8 6 5 10 10 C 1.46502 * 120.00144 * 183.22973 * 8 6 5 11 11 C 1.52998 * 109.47246 * 89.99728 * 10 8 6 12 12 O 1.42900 * 109.47341 * 65.00094 * 11 10 8 13 13 C 1.42893 * 114.00196 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47219 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47179 * 65.00101 * 14 13 12 16 16 C 1.46501 * 119.99954 * 270.00368 * 15 14 13 17 17 C 1.36941 * 120.00392 * 89.99918 * 15 14 13 18 18 H 1.07997 * 119.99284 * 29.86109 * 17 15 14 19 19 C 1.38812 * 120.00460 * 209.86338 * 17 15 14 20 20 N 1.31618 * 119.99761 * 7.24835 * 19 17 15 21 21 Si 1.86797 * 120.00081 * 187.25084 * 19 17 15 22 22 H 1.48494 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47265 * 119.99822 * 21 19 17 24 24 H 1.48508 * 109.46863 * 239.99775 * 21 19 17 25 25 N 1.31868 * 108.03470 * 0.35760 * 5 4 3 26 26 N 1.35839 * 126.08112 * 3.45746 * 3 2 1 27 27 C 1.46501 * 125.95000 * 359.96180 * 26 3 2 28 28 H 1.08998 * 109.47493 * 188.82174 * 1 2 3 29 29 H 1.09008 * 109.46808 * 308.82009 * 1 2 3 30 30 H 1.08994 * 109.47068 * 68.81576 * 1 2 3 31 31 H 1.07997 * 126.09854 * 0.03077 * 4 3 2 32 32 H 1.09007 * 109.47063 * 84.05354 * 9 8 6 33 33 H 1.08998 * 109.47410 * 204.05053 * 9 8 6 34 34 H 1.09001 * 109.47285 * 324.05881 * 9 8 6 35 35 H 1.08994 * 109.46829 * 210.00127 * 10 8 6 36 36 H 1.09007 * 109.46766 * 329.99719 * 10 8 6 37 37 H 1.09001 * 109.46930 * 185.00405 * 11 10 8 38 38 H 1.09008 * 109.46873 * 305.00102 * 11 10 8 39 39 H 1.09005 * 109.47249 * 300.00285 * 13 12 11 40 40 H 1.09008 * 109.47158 * 59.99981 * 13 12 11 41 41 H 1.08997 * 109.47281 * 184.99933 * 14 13 12 42 42 H 1.09001 * 109.46926 * 305.00102 * 14 13 12 43 43 H 1.09001 * 109.47482 * 94.42095 * 16 15 14 44 44 H 1.09009 * 109.47222 * 214.41746 * 16 15 14 45 45 H 1.09000 * 109.47101 * 334.41696 * 16 15 14 46 46 H 0.97001 * 119.99962 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.47053 * 82.30489 * 27 26 3 48 48 H 1.08998 * 109.47146 * 202.30523 * 27 26 3 49 49 H 1.08995 * 109.47258 * 322.31016 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2096 0.0000 4 6 3.3829 1.4244 -0.0602 5 6 3.5973 2.8184 -0.0381 6 6 4.9090 3.4957 -0.0900 7 8 5.9329 2.8434 -0.0274 8 7 4.9706 4.8371 -0.2067 9 6 3.7384 5.6293 -0.2109 10 6 6.2698 5.5028 -0.3294 11 6 6.6488 5.6130 -1.8076 12 8 5.7204 6.4703 -2.4748 13 6 5.9859 6.6423 -3.8682 14 6 4.9358 7.5741 -4.4763 15 7 5.0690 8.9094 -3.8888 16 6 4.3193 9.2552 -2.6785 17 6 5.8942 9.8344 -4.4707 18 1 6.0626 9.8124 -5.5372 19 6 6.5141 10.8002 -3.6898 20 7 6.4250 10.7425 -2.3779 21 14 7.4748 12.1817 -4.5008 22 1 7.4236 12.0205 -5.9761 23 1 6.8771 13.4879 -4.1241 24 1 8.8880 12.1347 -4.0469 25 7 2.4219 3.4109 0.0409 26 7 1.4324 2.4200 0.0662 27 6 -0.0122 2.6490 0.1495 28 1 -0.3634 -1.0155 0.1576 29 1 -0.3633 0.6443 0.8007 30 1 -0.3633 0.3713 -0.9582 31 1 4.1476 0.6638 -0.1172 32 1 3.4273 5.8228 0.8158 33 1 3.9167 6.5760 -0.7209 34 1 2.9541 5.0787 -0.7304 35 1 6.2094 6.5003 0.1056 36 1 7.0269 4.9219 0.1975 37 1 7.6533 6.0270 -1.8952 38 1 6.6226 4.6235 -2.2641 39 1 6.9766 7.0779 -3.9983 40 1 5.9463 5.6742 -4.3679 41 1 5.0848 7.6350 -5.5544 42 1 3.9396 7.1834 -4.2687 43 1 4.9440 9.0819 -1.8022 44 1 4.0312 10.3058 -2.7173 45 1 3.4250 8.6353 -2.6155 46 1 6.8579 11.4176 -1.8322 47 1 -0.3380 2.5417 1.1841 48 1 -0.2413 3.6553 -0.2012 49 1 -0.5320 1.9203 -0.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692304091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = 0.405953 kcal Electronic energy + Delta-G solvation = -30525.655844 eV Core-core repulsion = 26299.170845 eV Total energy + Delta-G solvation = -4226.484999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.74351 -40.85465 -39.25162 -38.87283 -37.21307 -36.41595 -34.50728 -33.44098 -31.89310 -30.78859 -29.61245 -28.97672 -27.75561 -27.58011 -27.07812 -25.01077 -24.66976 -22.89048 -22.47642 -22.09609 -20.30415 -18.94365 -18.70369 -17.86844 -17.74869 -17.46073 -17.15839 -16.89486 -16.63264 -16.45496 -16.21224 -16.01446 -15.54650 -15.28518 -15.16144 -15.11070 -14.65150 -14.48057 -14.20473 -13.95413 -13.87415 -13.81752 -13.61582 -13.26117 -13.02963 -12.96908 -12.73915 -12.61707 -12.42936 -12.29875 -12.28743 -12.19604 -12.00187 -11.76060 -11.70151 -11.59263 -11.20890 -10.60541 -10.36586 -10.22728 -9.74581 -9.49400 -8.60599 -7.75127 -5.30489 0.20205 1.04701 1.10903 1.47075 1.48429 1.58332 1.71702 2.17962 2.22808 2.53639 2.92762 3.04869 3.36919 3.71166 3.80329 4.00486 4.06704 4.12077 4.19491 4.27946 4.31653 4.36995 4.38086 4.44552 4.54305 4.55253 4.56919 4.64338 4.67574 4.67808 4.73326 4.74045 4.84862 4.98213 5.00978 5.02597 5.06860 5.19714 5.29589 5.38754 5.48454 5.71045 5.89855 6.13681 6.26804 6.35783 6.42303 6.48401 6.96560 7.23707 7.94229 8.42911 9.26241 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002363 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.925631 B =11846.566173 C =12398.920385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.300 6.300 3 C 0.282 3.718 4 C -0.263 4.263 5 C 0.042 3.958 6 C 0.591 3.409 7 O -0.563 6.563 8 N -0.587 5.587 9 C 0.087 3.913 10 C 0.125 3.875 11 C 0.051 3.949 12 O -0.380 6.380 13 C 0.053 3.947 14 C 0.151 3.849 15 N -0.610 5.610 16 C 0.190 3.810 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.928 5.928 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.294 1.294 25 N -0.250 5.250 26 N -0.387 5.387 27 C 0.062 3.938 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.042 0.958 39 H 0.021 0.979 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.010 0.990 44 H 0.003 0.997 45 H 0.022 0.978 46 H 0.246 0.754 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -21.189 6.565 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.206 6.206 3 C 0.114 3.886 4 C -0.293 4.293 5 C -0.123 4.123 6 C 0.378 3.622 7 O -0.441 6.441 8 N -0.317 5.317 9 C -0.055 4.055 10 C 0.002 3.998 11 C -0.027 4.027 12 O -0.300 6.300 13 C -0.026 4.026 14 C 0.024 3.976 15 N -0.334 5.334 16 C 0.045 3.955 17 C -0.396 4.396 18 H 0.084 0.916 19 C -0.243 4.243 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.221 1.221 25 N -0.082 5.082 26 N -0.184 5.184 27 C -0.076 4.076 28 H 0.149 0.851 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.022 0.978 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.583 -20.513 6.870 27.257 hybrid contribution 1.308 0.213 -0.368 1.375 sum -15.275 -20.300 6.502 26.224 Atomic orbital electron populations 1.24106 0.75271 1.07460 1.03159 1.86324 1.24432 1.20379 1.89486 1.19451 0.90680 0.79930 0.98584 1.20365 0.93361 0.95124 1.20461 1.21575 0.92510 0.93453 1.04748 1.17272 0.86560 0.81814 0.76560 1.90750 1.35340 1.65514 1.52506 1.47709 1.08949 1.05381 1.69693 1.22112 0.84976 0.96124 1.02336 1.21581 0.84964 0.98574 0.94650 1.22818 0.93126 0.93141 0.93590 1.87909 1.51935 1.67919 1.22192 1.23206 0.99755 0.97893 0.81751 1.21054 0.96358 0.83987 0.96155 1.44011 1.50177 1.09059 1.30103 1.20401 0.91341 0.95057 0.88660 1.19493 1.20616 1.08122 0.91359 0.91596 1.25929 0.99670 1.02832 0.95862 1.70218 1.47486 1.35681 1.04019 0.85261 0.77904 0.79191 0.78428 1.19075 1.21867 1.22096 1.77904 0.95212 1.10888 1.24191 1.49622 1.08471 1.02370 1.57983 1.23028 0.72014 1.07087 1.05520 0.85113 0.89884 0.90384 0.82355 0.91695 0.91002 0.89022 0.88984 0.87835 0.92964 0.93972 0.96035 0.93202 0.91377 0.92354 0.97134 0.97776 0.95909 0.94499 0.88086 0.87662 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.41 113.37 1.07 1.04 16 2 O -0.30 -4.71 10.57 -90.95 -0.96 -5.67 16 3 C 0.28 5.82 7.78 83.46 0.65 6.47 16 4 C -0.26 -6.94 10.60 22.35 0.24 -6.70 16 5 C 0.04 1.23 6.79 42.34 0.29 1.52 16 6 C 0.59 19.39 7.68 86.75 0.67 20.06 16 7 O -0.56 -21.07 16.47 -3.94 -0.06 -21.13 16 8 N -0.59 -18.20 2.84 -850.33 -2.41 -20.61 16 9 C 0.09 2.45 9.35 127.77 1.19 3.65 16 10 C 0.12 3.91 5.81 86.38 0.50 4.41 16 11 C 0.05 1.77 6.28 71.98 0.45 2.22 16 12 O -0.38 -15.20 8.84 -148.98 -1.32 -16.51 16 13 C 0.05 2.10 6.28 71.98 0.45 2.55 16 14 C 0.15 6.23 6.11 86.38 0.53 6.76 16 15 N -0.61 -31.14 2.87 -726.94 -2.08 -33.23 16 16 C 0.19 9.64 8.63 127.77 1.10 10.74 16 17 C -0.27 -14.70 9.60 84.03 0.81 -13.89 16 18 H 0.07 3.55 7.84 -2.91 -0.02 3.52 16 19 C -0.05 -2.66 5.21 84.86 0.44 -2.22 16 20 N -0.93 -55.40 10.84 21.65 0.23 -55.16 16 21 Si 0.96 45.49 29.56 68.60 2.03 47.52 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 N -0.25 -6.26 9.09 -48.43 -0.44 -6.70 16 26 N -0.39 -7.11 4.03 -480.58 -1.94 -9.05 16 27 C 0.06 0.43 9.56 127.77 1.22 1.65 16 28 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.08 0.11 5.63 -2.38 -0.01 0.09 16 30 H 0.08 0.14 6.73 -2.39 -0.02 0.12 16 31 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.07 2.29 7.24 -2.39 -0.02 2.27 16 34 H 0.09 2.54 5.38 -2.39 -0.01 2.52 16 35 H 0.09 2.90 8.07 -2.39 -0.02 2.88 16 36 H 0.10 3.06 7.38 -2.38 -0.02 3.05 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 42 H 0.06 2.21 7.86 -2.39 -0.02 2.19 16 43 H 0.01 0.58 7.26 -2.39 -0.02 0.56 16 44 H 0.00 0.19 7.60 -2.38 -0.02 0.17 16 45 H 0.02 0.99 7.84 -2.39 -0.02 0.97 16 46 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.10 0.31 7.59 -2.39 -0.02 0.29 16 48 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.12 0.16 4.73 -2.39 -0.01 0.15 16 Total: -1.00 -76.20 398.08 3.60 -72.60 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.95 Total: 9.70 kcal Atomic # 6 Polarization: 28.64 SS G_CDS: 9.61 Total: 38.25 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -6.64 Total: -124.75 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -2.34 Total: -43.31 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.20 3.60 -72.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692304091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.007 kcal (2) G-P(sol) polarization free energy of solvation -76.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds