Wall clock time and date at job start Sat Apr 11 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46906 * 2 1 4 4 C 1.46505 * 119.99709 * 90.00878 * 3 2 1 5 5 C 1.50698 * 109.47711 * 89.99633 * 4 3 2 6 6 H 1.07999 * 119.99277 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00200 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00175 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00015 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46941 * 59.99850 * 9 7 5 11 11 H 1.48497 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47024 * 299.99935 * 9 7 5 13 13 C 1.34771 * 120.00289 * 270.00046 * 3 2 1 14 14 O 1.21289 * 120.00117 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00322 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47499 * 180.02562 * 15 13 3 17 17 C 1.47853 * 110.99635 * 290.83838 * 16 15 13 18 18 C 1.54911 * 104.79577 * 213.63665 * 17 16 15 19 19 C 1.55142 * 101.65317 * 37.06918 * 18 17 16 20 20 H 1.09005 * 110.85480 * 82.79745 * 19 18 17 21 21 N 1.46499 * 110.70749 * 205.96245 * 19 18 17 22 22 C 1.46498 * 120.00083 * 233.60086 * 21 19 18 23 23 C 1.34781 * 119.99883 * 53.60019 * 21 19 18 24 24 O 1.21353 * 119.99966 * 356.79342 * 23 21 19 25 25 C 1.49444 * 119.99976 * 176.79170 * 23 21 19 26 26 N 1.34782 * 119.99804 * 185.91044 * 25 23 21 27 27 O 1.21345 * 120.00261 * 5.91240 * 25 23 21 28 28 C 1.47445 * 111.00427 * 169.99769 * 16 15 13 29 29 H 1.08995 * 109.47543 * 59.99480 * 1 2 3 30 30 H 1.08997 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46967 * 299.99283 * 1 2 3 32 32 H 1.08995 * 109.47543 * 120.00520 * 2 1 3 33 33 H 1.09002 * 109.46967 * 240.00717 * 2 1 3 34 34 H 1.09000 * 109.46560 * 210.00052 * 4 3 2 35 35 H 1.09003 * 109.46722 * 329.99303 * 4 3 2 36 36 H 0.97001 * 119.99769 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.46744 * 299.99336 * 15 13 3 38 38 H 1.08999 * 109.47399 * 59.99158 * 15 13 3 39 39 H 1.08995 * 110.37459 * 332.46914 * 17 16 15 40 40 H 1.09000 * 110.37095 * 94.81216 * 17 16 15 41 41 H 1.09005 * 110.98976 * 278.97773 * 18 17 16 42 42 H 1.08997 * 110.98977 * 155.16350 * 18 17 16 43 43 H 1.09001 * 109.46923 * 95.94978 * 22 21 19 44 44 H 1.08995 * 109.47081 * 215.94248 * 22 21 19 45 45 H 1.08997 * 109.46984 * 335.94390 * 22 21 19 46 46 H 0.96997 * 119.99962 * 0.02562 * 26 25 23 47 47 H 0.96998 * 119.99414 * 179.97438 * 26 25 23 48 48 H 1.08992 * 109.88941 * 242.65820 * 28 16 15 49 49 H 1.08998 * 109.88426 * 3.68850 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1492 2.3894 2.8780 8 7 3.3492 3.1255 3.6182 9 14 5.9133 2.0953 3.4175 10 1 6.8411 2.6187 2.3829 11 1 6.1608 2.7954 4.7035 12 1 6.1403 0.6385 3.5946 13 6 2.2429 2.0166 -1.1671 14 8 2.6476 3.1600 -1.1671 15 6 1.9912 1.3065 -2.4723 16 7 2.3101 2.2063 -3.5887 17 6 1.3338 3.3135 -3.6723 18 6 1.2035 3.6126 -5.1866 19 6 1.2950 2.1890 -5.7963 20 1 0.3265 1.6898 -5.7638 21 7 1.8008 2.2453 -7.1701 22 6 1.0470 1.6116 -8.2547 23 6 2.9595 2.8801 -7.4361 24 8 3.5543 3.4548 -6.5480 25 6 3.5120 2.8763 -8.8247 26 7 4.7267 3.4070 -9.0681 27 8 2.8669 2.3954 -9.7330 28 6 2.3060 1.4791 -4.8714 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 2.0955 3.1410 1.1385 35 1 1.5818 1.6876 2.0284 36 1 3.6753 3.5159 4.4441 37 1 2.6213 0.4189 -2.5303 38 1 0.9432 1.0126 -2.5299 39 1 0.3725 3.0035 -3.2626 40 1 1.7079 4.1900 -3.1432 41 1 2.0253 4.2393 -5.5330 42 1 0.2416 4.0729 -5.4123 43 1 0.4218 2.3569 -8.7464 44 1 1.7412 1.1850 -8.9787 45 1 0.4172 0.8214 -7.8460 46 1 5.2425 3.7911 -8.3420 47 1 5.0854 3.4042 -9.9693 48 1 3.3001 1.5080 -5.3172 49 1 2.0019 0.4448 -4.7102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698567514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:19 Heat of formation + Delta-G solvation = -67.598537 kcal Electronic energy + Delta-G solvation = -30689.034274 eV Core-core repulsion = 26459.600379 eV Total energy + Delta-G solvation = -4229.433895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28404 -39.66362 -38.83304 -37.63464 -35.89959 -35.10119 -33.89750 -32.79350 -31.56791 -30.04890 -28.89521 -27.82944 -27.17465 -25.98281 -24.48273 -22.99054 -22.48857 -21.90431 -20.98150 -19.87212 -18.38909 -18.01082 -17.60308 -16.69336 -16.46611 -16.35176 -16.22408 -15.96604 -15.64300 -14.96574 -14.73514 -14.64525 -14.36232 -14.12170 -13.98537 -13.50225 -13.42492 -13.25555 -13.01552 -12.90634 -12.57738 -12.34925 -12.20885 -11.94748 -11.79584 -11.76373 -11.55839 -11.35217 -11.20537 -11.13110 -10.87741 -10.70152 -10.67040 -10.46423 -10.28003 -10.06984 -9.58777 -9.57708 -9.05572 -8.79152 -8.37726 -8.04015 -7.57122 -5.98786 -4.03011 1.10547 2.08014 2.86984 3.28354 3.35992 3.40310 3.43379 3.54400 3.76822 4.12599 4.24196 4.46821 4.51646 4.63347 4.69590 4.90565 5.08101 5.22711 5.24775 5.32376 5.33577 5.34840 5.37360 5.50854 5.56652 5.60010 5.66985 5.67405 5.77686 5.80713 5.98034 6.04180 6.16030 6.24707 6.35305 6.38314 6.48211 6.54399 6.83961 6.99468 7.09690 7.21880 7.42572 7.51015 7.63623 7.68545 7.98487 8.30243 8.51720 8.97476 9.22706 9.62115 11.09235 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.002493 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.059231 B =11227.678045 C =12218.959269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.507 3.493 14 O -0.521 6.521 15 C 0.031 3.969 16 N -0.498 5.498 17 C 0.056 3.944 18 C -0.147 4.147 19 C 0.123 3.877 20 H 0.101 0.899 21 N -0.579 5.579 22 C 0.065 3.935 23 C 0.498 3.502 24 O -0.492 6.492 25 C 0.514 3.486 26 N -0.821 5.821 27 O -0.522 6.522 28 C 0.040 3.960 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.416 0.584 47 H 0.410 0.590 48 H 0.085 0.915 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 -5.778 -24.963 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.130 3.870 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.100 4.100 16 N -0.223 5.223 17 C -0.071 4.071 18 C -0.185 4.185 19 C 0.019 3.981 20 H 0.119 0.881 21 N -0.313 5.313 22 C -0.077 4.077 23 C 0.279 3.721 24 O -0.367 6.367 25 C 0.294 3.706 26 N -0.387 5.387 27 O -0.398 6.398 28 C -0.089 4.089 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.086 0.914 46 H 0.247 0.753 47 H 0.242 0.758 48 H 0.103 0.897 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.864 -4.892 -24.634 25.791 hybrid contribution 0.457 -0.535 0.232 0.741 sum -5.407 -5.426 -24.402 25.576 Atomic orbital electron populations 1.22221 0.96993 1.01263 1.02189 1.21380 0.93326 0.84487 1.02526 1.48257 1.64371 1.13165 1.07711 1.19221 0.96132 0.93585 0.78098 1.21411 0.96992 1.31764 1.06100 0.92554 1.24927 0.97784 0.94973 0.96428 1.69926 1.35701 1.33566 1.14387 0.86570 0.84970 0.78170 0.77781 1.20132 1.21243 1.20321 1.20089 0.78938 0.87176 0.84605 1.90668 1.44293 1.17826 1.86809 1.22358 1.00026 0.96225 0.91424 1.63246 1.49280 1.08970 1.00779 1.22984 0.93169 0.96148 0.94841 1.23243 1.03339 0.96306 0.95658 1.22583 0.97366 0.98252 0.79876 0.88135 1.47629 1.21523 1.53219 1.08918 1.22421 0.97619 0.97839 0.89799 1.20029 0.82163 0.81030 0.88867 1.90856 1.58189 1.41379 1.46228 1.20240 0.82404 0.78374 0.89616 1.43574 1.18861 1.61192 1.15094 1.90713 1.58512 1.44216 1.46378 1.23145 1.00125 0.95891 0.89782 0.93332 0.92274 0.92011 0.89987 0.92010 0.93987 0.95186 0.92745 0.88694 0.92643 0.94101 0.88436 0.87888 0.90997 0.92170 0.87667 0.91441 0.75330 0.75759 0.89708 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.82 2.46 -175.06 -0.43 -13.25 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 5 C -0.52 -15.12 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 9 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.75 7.47 -10.99 -0.08 10.66 16 14 O -0.52 -13.45 14.62 5.55 0.08 -13.37 16 15 C 0.03 0.48 3.61 -4.98 -0.02 0.47 16 16 N -0.50 -7.84 4.86 -232.69 -1.13 -8.97 16 17 C 0.06 0.83 5.74 -2.29 -0.01 0.82 16 18 C -0.15 -1.76 6.38 -24.59 -0.16 -1.92 16 19 C 0.12 1.25 3.43 -66.11 -0.23 1.02 16 20 H 0.10 0.79 7.82 -51.93 -0.41 0.39 16 21 N -0.58 -5.51 2.94 -172.36 -0.51 -6.02 16 22 C 0.07 0.47 9.53 59.85 0.57 1.04 16 23 C 0.50 5.36 6.83 -11.59 -0.08 5.29 16 24 O -0.49 -6.61 12.86 5.49 0.07 -6.54 16 25 C 0.51 4.70 8.04 -11.59 -0.09 4.61 16 26 N -0.82 -4.95 8.87 30.90 0.27 -4.68 16 27 O -0.52 -5.47 13.98 5.50 0.08 -5.39 16 28 C 0.04 0.48 6.15 -2.83 -0.02 0.46 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.09 1.34 7.29 -51.93 -0.38 0.96 16 38 H 0.06 0.72 6.89 -51.93 -0.36 0.36 16 39 H 0.04 0.56 7.62 -51.93 -0.40 0.16 16 40 H 0.10 1.75 7.38 -51.93 -0.38 1.37 16 41 H 0.10 1.46 5.58 -51.93 -0.29 1.17 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.11 0.85 5.38 -51.93 -0.28 0.57 16 45 H 0.07 0.36 7.86 -51.93 -0.41 -0.05 16 46 H 0.42 2.26 8.32 -40.82 -0.34 1.92 16 47 H 0.41 1.57 8.93 -40.82 -0.36 1.20 16 48 H 0.08 1.17 6.50 -51.93 -0.34 0.83 16 49 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -36.63 391.10 -7.66 -44.30 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.50 Total: 1.97 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -0.21 Total: 15.07 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -1.06 Total: -59.22 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.23 Total: -25.30 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.63 -7.66 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698567514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.302 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds