Wall clock time and date at job start Sat Apr 11 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 110.99733 * 2 1 4 4 C 1.52995 * 109.47346 * 66.04385 * 3 2 1 5 5 N 1.46501 * 109.46937 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00098 * 90.00021 * 5 4 3 7 7 C 1.34771 * 120.00308 * 269.99876 * 5 4 3 8 8 O 1.21283 * 120.00089 * 359.97438 * 7 5 4 9 9 C 1.50702 * 120.00335 * 180.02562 * 7 5 4 10 10 H 1.08996 * 110.21783 * 39.52160 * 9 7 5 11 11 C 1.54478 * 110.24505 * 277.50005 * 9 7 5 12 12 C 1.54633 * 101.76502 * 266.41834 * 11 9 7 13 13 C 1.51287 * 104.19427 * 335.19781 * 12 11 9 14 14 O 1.21272 * 124.94260 * 196.27593 * 13 12 11 15 15 N 1.34421 * 110.11305 * 16.25787 * 13 12 11 16 16 C 1.46498 * 124.34602 * 180.42915 * 15 13 12 17 17 C 1.46894 * 111.00231 * 236.04095 * 2 1 3 18 18 C 1.50707 * 109.47205 * 293.95518 * 17 2 1 19 19 O 1.21292 * 120.00111 * 0.02562 * 18 17 2 20 20 N 1.34772 * 120.00058 * 180.02562 * 18 17 2 21 21 C 1.37100 * 120.00047 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99722 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99755 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99776 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47335 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47431 * 120.00311 * 25 23 21 28 28 H 1.48506 * 109.47147 * 240.00182 * 25 23 21 29 29 H 1.09007 * 109.46778 * 60.00824 * 1 2 3 30 30 H 1.09007 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47487 * 300.00485 * 1 2 3 32 32 H 1.08999 * 109.47366 * 306.03921 * 3 2 1 33 33 H 1.09000 * 109.46860 * 186.04200 * 3 2 1 34 34 H 1.09000 * 109.47411 * 60.00007 * 4 3 2 35 35 H 1.09000 * 109.46990 * 299.99735 * 4 3 2 36 36 H 1.09001 * 109.47060 * 270.00243 * 6 5 4 37 37 H 1.09004 * 109.47073 * 29.99732 * 6 5 4 38 38 H 1.09000 * 109.47212 * 149.99814 * 6 5 4 39 39 H 1.09002 * 110.97024 * 24.53240 * 11 9 7 40 40 H 1.08997 * 110.96869 * 148.29786 * 11 9 7 41 41 H 1.09005 * 110.48363 * 216.52680 * 12 11 9 42 42 H 1.08996 * 110.60446 * 93.93528 * 12 11 9 43 43 H 1.09002 * 109.46767 * 269.97262 * 16 15 13 44 44 H 1.08999 * 109.47529 * 29.97474 * 16 15 13 45 45 H 1.09000 * 109.47019 * 149.97400 * 16 15 13 46 46 H 1.08996 * 109.47303 * 53.95229 * 17 2 1 47 47 H 1.09002 * 109.47061 * 173.95722 * 17 2 1 48 48 H 0.97007 * 120.00147 * 359.97438 * 20 18 17 49 49 H 0.97003 * 120.00053 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 7 2.1569 3.4250 1.3183 6 6 1.3374 4.5247 0.8031 7 6 3.3941 3.6714 1.7925 8 8 4.0724 2.7612 2.2195 9 6 3.9345 5.0782 1.7932 10 1 3.1497 5.7830 2.0679 11 6 4.5096 5.4306 0.4034 12 6 6.0027 5.0690 0.5791 13 6 6.2383 5.1796 2.0694 14 8 7.3280 5.2508 2.5970 15 7 5.0641 5.1879 2.7237 16 6 4.9294 5.2935 4.1786 17 6 1.9955 -0.7660 -1.1375 18 6 1.6370 -2.2205 -0.9726 19 8 1.0046 -2.5832 -0.0032 20 7 2.0190 -3.1183 -1.9024 21 6 1.6924 -4.4414 -1.7527 22 1 1.1293 -4.7642 -0.8895 23 6 2.0858 -5.3668 -2.7116 24 7 2.7713 -4.9740 -3.7616 25 14 1.6414 -7.1696 -2.5073 26 1 0.8731 -7.3506 -1.2495 27 1 0.8143 -7.6093 -3.6596 28 1 2.8831 -7.9822 -2.4507 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1082 34 1 2.0657 1.5016 2.1492 35 1 0.5471 2.0845 1.4263 36 1 1.5238 4.6478 -0.2638 37 1 0.2833 4.2987 0.9640 38 1 1.5954 5.4458 1.3257 39 1 4.0497 4.8216 -0.3749 40 1 4.3880 6.4923 0.1888 41 1 6.6326 5.7765 0.0398 42 1 6.1938 4.0518 0.2371 43 1 4.9315 4.2955 4.6171 44 1 5.7638 5.8685 4.5801 45 1 3.9925 5.7950 4.4213 46 1 1.5612 -0.3874 -2.0627 47 1 3.0798 -0.6612 -1.1754 48 1 2.5244 -2.8282 -2.6779 49 1 3.0456 -5.6200 -4.4312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698993962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:38 Heat of formation + Delta-G solvation = -75.036011 kcal Electronic energy + Delta-G solvation = -30018.757981 eV Core-core repulsion = 25789.001574 eV Total energy + Delta-G solvation = -4229.756408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40374 -39.55456 -38.58917 -36.97250 -36.36815 -35.56993 -33.84136 -33.20690 -31.25120 -30.56046 -28.42262 -27.77499 -27.04897 -26.92217 -25.35956 -24.11883 -22.83268 -21.34988 -20.22880 -19.35306 -19.12263 -18.05396 -17.82876 -17.19017 -16.62162 -16.32878 -15.84343 -15.59674 -15.49626 -15.19526 -14.63743 -14.54667 -14.26276 -14.05195 -13.90267 -13.79666 -13.61978 -13.40969 -13.34465 -13.08105 -13.06455 -12.92599 -12.67063 -12.53148 -12.16821 -12.09765 -11.82918 -11.74621 -11.50603 -11.31061 -11.28804 -10.94624 -10.84564 -10.37221 -10.33146 -10.21407 -10.12176 -9.47635 -9.09349 -9.05025 -8.43122 -7.97128 -7.86366 -6.40568 -3.81202 2.13589 2.21770 2.45039 2.79105 3.17271 3.27831 3.35092 3.83083 3.89800 3.91507 3.95725 4.08374 4.22086 4.29203 4.53776 4.67629 4.76965 4.84511 4.88045 4.94642 5.07971 5.13346 5.13981 5.17046 5.24843 5.26255 5.33385 5.39791 5.42724 5.46172 5.61060 5.64693 5.76406 5.85640 5.93630 6.00237 6.01909 6.18052 6.29234 6.51275 6.67156 6.97121 7.22974 7.36910 7.56728 7.78051 7.86933 8.07931 8.63124 9.19554 9.55817 10.07600 10.77336 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.002048 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.062457 B =13668.905873 C =14364.562380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.044 3.956 4 C 0.118 3.882 5 N -0.613 5.613 6 C 0.073 3.927 7 C 0.497 3.503 8 O -0.513 6.513 9 C 0.114 3.886 10 H 0.112 0.888 11 C -0.118 4.118 12 C -0.156 4.156 13 C 0.526 3.474 14 O -0.528 6.528 15 N -0.604 5.604 16 C 0.096 3.904 17 C 0.048 3.952 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.014 0.986 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 27.920 5.693 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.085 4.085 4 C -0.004 4.004 5 N -0.348 5.348 6 C -0.071 4.071 7 C 0.282 3.718 8 O -0.387 6.387 9 C 0.005 3.995 10 H 0.129 0.871 11 C -0.157 4.157 12 C -0.196 4.196 13 C 0.314 3.686 14 O -0.404 6.404 15 N -0.338 5.338 16 C -0.046 4.046 17 C -0.083 4.083 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.337 26.875 7.252 27.868 hybrid contribution -0.365 -0.390 -1.313 1.418 sum -1.701 26.485 5.939 27.196 Atomic orbital electron populations 1.22599 0.86808 1.04659 0.98713 1.61441 1.08574 1.10893 1.43120 1.22416 1.00784 0.89113 0.96227 1.21534 0.98964 0.80554 0.99350 1.47881 1.15425 1.08910 1.62576 1.21942 0.96230 0.89413 0.99466 1.20975 0.81457 0.91215 0.78141 1.90794 1.56985 1.45930 1.44959 1.21696 0.90796 0.94929 0.92070 0.87080 1.22571 0.95148 1.03648 0.94284 1.22371 0.97244 1.05635 0.94376 1.20810 0.83416 0.74516 0.89879 1.90731 1.25570 1.49996 1.74053 1.47845 1.06227 1.72835 1.06843 1.21596 1.02602 1.02455 0.77916 1.21851 1.00711 0.94169 0.91594 1.19714 0.85438 0.86614 0.85222 1.90482 1.43912 1.80134 1.31581 1.41875 1.49419 1.07387 1.21480 1.19745 1.32774 0.82265 1.07879 0.87852 1.25263 0.96852 1.00576 0.95339 1.69620 1.38126 1.35663 1.10970 0.85802 0.78214 0.81952 0.78387 1.19219 1.20810 1.20739 0.96780 0.88454 0.92185 0.95176 0.90696 0.88692 0.90145 0.92068 0.90515 0.90973 0.88569 0.88425 0.87428 0.87239 0.92044 0.90276 0.91137 0.93496 0.89428 0.77510 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.07 0.54 0.85 16 2 N -0.52 -8.56 4.50 -244.37 -1.10 -9.66 16 3 C 0.04 0.56 5.28 -3.83 -0.02 0.54 16 4 C 0.12 1.29 5.38 -4.04 -0.02 1.27 16 5 N -0.61 -5.02 2.87 -181.57 -0.52 -5.54 16 6 C 0.07 0.27 10.21 59.85 0.61 0.88 16 7 C 0.50 4.99 6.83 -10.99 -0.08 4.92 16 8 O -0.51 -7.82 16.16 5.55 0.09 -7.73 16 9 C 0.11 0.75 2.69 -68.16 -0.18 0.57 16 10 H 0.11 0.38 6.33 -51.93 -0.33 0.05 16 11 C -0.12 -0.55 6.58 -25.10 -0.17 -0.72 16 12 C -0.16 -1.19 6.85 -26.74 -0.18 -1.37 16 13 C 0.53 6.07 8.02 -10.86 -0.09 5.98 16 14 O -0.53 -8.23 17.59 5.56 0.10 -8.13 16 15 N -0.60 -5.72 2.56 -174.02 -0.45 -6.16 16 16 C 0.10 0.78 10.95 59.85 0.66 1.43 16 17 C 0.05 0.87 5.45 -4.98 -0.03 0.85 16 18 C 0.44 10.58 7.47 -10.98 -0.08 10.50 16 19 O -0.58 -15.58 13.91 5.55 0.08 -15.50 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 25 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 1.87 5.82 -51.93 -0.30 1.57 16 31 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 32 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 34 H 0.09 1.32 7.42 -51.93 -0.39 0.94 16 35 H 0.08 0.75 6.31 -51.93 -0.33 0.42 16 36 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.08 0.24 7.89 -51.93 -0.41 -0.17 16 38 H 0.07 0.11 5.95 -51.93 -0.31 -0.20 16 39 H 0.10 0.39 7.89 -51.93 -0.41 -0.02 16 40 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.65 7.93 -51.93 -0.41 0.23 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 47 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 48 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -37.87 401.15 -7.07 -44.95 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.68 Total: 6.35 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 0.72 Total: 17.70 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -1.40 Total: -59.84 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: 0.26 Total: -31.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.87 -7.07 -44.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698993962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.090 kcal (2) G-P(sol) polarization free energy of solvation -37.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds