Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 110.99733 * 2 1 4 4 C 1.52995 * 109.47346 * 66.04385 * 3 2 1 5 5 N 1.46501 * 109.46937 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00098 * 90.00021 * 5 4 3 7 7 C 1.34771 * 120.00308 * 269.99876 * 5 4 3 8 8 O 1.21283 * 120.00089 * 359.97438 * 7 5 4 9 9 C 1.50702 * 120.00335 * 180.02562 * 7 5 4 10 10 H 1.08996 * 110.21783 * 39.52160 * 9 7 5 11 11 C 1.54478 * 110.24505 * 277.50005 * 9 7 5 12 12 C 1.54633 * 101.76502 * 266.41834 * 11 9 7 13 13 C 1.51287 * 104.19427 * 335.19781 * 12 11 9 14 14 O 1.21272 * 124.94260 * 196.27593 * 13 12 11 15 15 N 1.34421 * 110.11305 * 16.25787 * 13 12 11 16 16 C 1.46498 * 124.34602 * 180.42915 * 15 13 12 17 17 C 1.46894 * 111.00231 * 236.04095 * 2 1 3 18 18 C 1.50707 * 109.47205 * 293.95518 * 17 2 1 19 19 O 1.21292 * 120.00111 * 0.02562 * 18 17 2 20 20 N 1.34772 * 120.00058 * 180.02562 * 18 17 2 21 21 C 1.37100 * 120.00047 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99722 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99755 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99776 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47335 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47431 * 120.00311 * 25 23 21 28 28 H 1.48506 * 109.47147 * 240.00182 * 25 23 21 29 29 H 1.09007 * 109.46778 * 60.00824 * 1 2 3 30 30 H 1.09007 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47487 * 300.00485 * 1 2 3 32 32 H 1.08999 * 109.47366 * 306.03921 * 3 2 1 33 33 H 1.09000 * 109.46860 * 186.04200 * 3 2 1 34 34 H 1.09000 * 109.47411 * 60.00007 * 4 3 2 35 35 H 1.09000 * 109.46990 * 299.99735 * 4 3 2 36 36 H 1.09001 * 109.47060 * 270.00243 * 6 5 4 37 37 H 1.09004 * 109.47073 * 29.99732 * 6 5 4 38 38 H 1.09000 * 109.47212 * 149.99814 * 6 5 4 39 39 H 1.09002 * 110.97024 * 24.53240 * 11 9 7 40 40 H 1.08997 * 110.96869 * 148.29786 * 11 9 7 41 41 H 1.09005 * 110.48363 * 216.52680 * 12 11 9 42 42 H 1.08996 * 110.60446 * 93.93528 * 12 11 9 43 43 H 1.09002 * 109.46767 * 269.97262 * 16 15 13 44 44 H 1.08999 * 109.47529 * 29.97474 * 16 15 13 45 45 H 1.09000 * 109.47019 * 149.97400 * 16 15 13 46 46 H 1.08996 * 109.47303 * 53.95229 * 17 2 1 47 47 H 1.09002 * 109.47061 * 173.95722 * 17 2 1 48 48 H 0.97007 * 120.00147 * 359.97438 * 20 18 17 49 49 H 0.97003 * 120.00053 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 7 2.1569 3.4250 1.3183 6 6 1.3374 4.5247 0.8031 7 6 3.3941 3.6714 1.7925 8 8 4.0724 2.7612 2.2195 9 6 3.9345 5.0782 1.7932 10 1 3.1497 5.7830 2.0679 11 6 4.5096 5.4306 0.4034 12 6 6.0027 5.0690 0.5791 13 6 6.2383 5.1796 2.0694 14 8 7.3280 5.2508 2.5970 15 7 5.0641 5.1879 2.7237 16 6 4.9294 5.2935 4.1786 17 6 1.9955 -0.7660 -1.1375 18 6 1.6370 -2.2205 -0.9726 19 8 1.0046 -2.5832 -0.0032 20 7 2.0190 -3.1183 -1.9024 21 6 1.6924 -4.4414 -1.7527 22 1 1.1293 -4.7642 -0.8895 23 6 2.0858 -5.3668 -2.7116 24 7 2.7713 -4.9740 -3.7616 25 14 1.6414 -7.1696 -2.5073 26 1 0.8731 -7.3506 -1.2495 27 1 0.8143 -7.6093 -3.6596 28 1 2.8831 -7.9822 -2.4507 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1082 34 1 2.0657 1.5016 2.1492 35 1 0.5471 2.0845 1.4263 36 1 1.5238 4.6478 -0.2638 37 1 0.2833 4.2987 0.9640 38 1 1.5954 5.4458 1.3257 39 1 4.0497 4.8216 -0.3749 40 1 4.3880 6.4923 0.1888 41 1 6.6326 5.7765 0.0398 42 1 6.1938 4.0518 0.2371 43 1 4.9315 4.2955 4.6171 44 1 5.7638 5.8685 4.5801 45 1 3.9925 5.7950 4.4213 46 1 1.5612 -0.3874 -2.0627 47 1 3.0798 -0.6612 -1.1754 48 1 2.5244 -2.8282 -2.6779 49 1 3.0456 -5.6200 -4.4312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698993962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -105.390322 kcal Electronic energy + Delta-G solvation = -30020.074243 eV Core-core repulsion = 25789.001574 eV Total energy + Delta-G solvation = -4231.072669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10221 -40.53107 -40.17291 -38.20451 -37.29708 -36.50568 -35.82956 -33.79640 -33.29295 -31.52506 -29.44838 -28.84921 -27.68054 -27.52366 -26.92301 -25.48860 -23.50569 -22.42661 -21.07653 -20.95914 -20.01148 -19.85296 -18.67670 -17.93982 -17.82798 -17.44107 -16.76519 -16.67141 -16.60729 -16.37681 -16.22154 -15.80394 -15.56849 -15.14518 -15.03039 -14.72649 -14.67452 -14.41520 -14.11158 -13.98537 -13.76088 -13.72751 -13.56795 -13.46004 -13.28362 -13.11094 -13.00387 -12.97903 -12.60811 -12.52145 -12.40854 -12.33521 -12.26096 -12.12156 -11.81357 -11.47254 -11.18076 -10.97255 -10.33936 -10.00872 -9.80491 -9.72651 -9.19280 -8.47279 -5.95820 1.35393 1.35689 1.40817 1.48592 1.55136 1.77102 2.04320 2.11727 2.29028 2.85359 3.19451 3.25044 3.40599 3.41960 3.49228 3.82938 3.95824 4.07286 4.11157 4.22187 4.27842 4.33201 4.36322 4.42490 4.47142 4.49450 4.53868 4.62936 4.66998 4.76644 4.77781 4.79038 4.85321 4.89763 4.97666 5.02693 5.08340 5.23598 5.35737 5.40678 5.47893 5.85772 5.94416 6.06128 6.21077 6.36377 6.60076 7.00206 7.12568 7.13787 7.55702 8.11658 8.70487 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.002048 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.062457 B =13668.905873 C =14364.562380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.054 3.946 4 C 0.125 3.875 5 N -0.604 5.604 6 C 0.061 3.939 7 C 0.491 3.509 8 O -0.580 6.580 9 C 0.115 3.885 10 H 0.159 0.841 11 C -0.104 4.104 12 C -0.156 4.156 13 C 0.508 3.492 14 O -0.584 6.584 15 N -0.605 5.605 16 C 0.091 3.909 17 C 0.061 3.939 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.396 0.604 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 30.800 4.117 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.075 4.075 4 C 0.001 3.999 5 N -0.337 5.337 6 C -0.080 4.080 7 C 0.279 3.721 8 O -0.458 6.458 9 C 0.007 3.993 10 H 0.176 0.824 11 C -0.142 4.142 12 C -0.196 4.196 13 C 0.298 3.702 14 O -0.465 6.465 15 N -0.337 5.337 16 C -0.050 4.050 17 C -0.070 4.070 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.091 0.909 47 H 0.116 0.884 48 H 0.229 0.771 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.311 29.813 5.636 30.522 hybrid contribution 0.172 -1.250 -0.772 1.479 sum -3.139 28.564 4.865 29.144 Atomic orbital electron populations 1.22479 0.86114 1.02464 1.01070 1.61358 1.09447 1.13293 1.42750 1.22370 0.99691 0.87274 0.98175 1.21303 0.99823 0.81848 0.96905 1.47944 1.15242 1.08874 1.61676 1.22354 0.96116 0.88674 1.00862 1.21689 0.81420 0.92046 0.76986 1.90781 1.58892 1.48150 1.48009 1.22061 0.90937 0.93391 0.92867 0.82400 1.22719 0.92037 1.06357 0.93092 1.22419 1.00346 1.05331 0.91529 1.21617 0.83198 0.73618 0.91810 1.90682 1.27681 1.52640 1.75469 1.48075 1.06727 1.71309 1.07621 1.21680 1.04366 1.01338 0.77610 1.21685 1.01522 0.90330 0.93469 1.20764 0.83729 0.88770 0.83884 1.90460 1.45161 1.81448 1.32892 1.41949 1.50046 1.07094 1.22203 1.19682 1.34282 0.84029 1.08011 0.90358 1.26044 0.96293 1.04355 0.94709 1.69678 1.38161 1.37126 1.11280 0.84870 0.78227 0.76911 0.78320 1.19831 1.19376 1.19777 0.94376 0.92875 0.89736 0.92188 0.92424 0.92685 0.87977 0.90147 0.89437 0.87995 0.87312 0.84293 0.85541 0.88852 0.94539 0.90922 0.87283 0.90888 0.88414 0.77068 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.96 127.69 1.14 1.92 16 2 N -0.54 -17.55 4.50 -927.06 -4.17 -21.72 16 3 C 0.05 1.25 5.28 86.30 0.46 1.70 16 4 C 0.12 2.51 5.38 86.38 0.46 2.97 16 5 N -0.60 -8.05 2.87 -846.74 -2.43 -10.48 16 6 C 0.06 0.12 10.21 127.77 1.31 1.42 16 7 C 0.49 9.03 6.83 87.66 0.60 9.63 16 8 O -0.58 -18.27 16.16 -3.04 -0.05 -18.32 16 9 C 0.11 1.13 2.69 44.70 0.12 1.25 16 10 H 0.16 0.11 6.33 -2.39 -0.02 0.10 16 11 C -0.10 -0.53 6.58 31.65 0.21 -0.32 16 12 C -0.16 -2.17 6.85 30.59 0.21 -1.96 16 13 C 0.51 11.85 8.02 87.90 0.71 12.55 16 14 O -0.58 -19.33 17.59 -3.00 -0.05 -19.39 16 15 N -0.61 -10.85 2.56 -823.08 -2.11 -12.96 16 16 C 0.09 1.46 10.95 127.77 1.40 2.86 16 17 C 0.06 2.18 5.45 85.56 0.47 2.64 16 18 C 0.44 21.48 7.47 87.66 0.66 22.14 16 19 O -0.61 -34.43 13.91 -3.07 -0.04 -34.47 16 20 N -0.58 -30.15 5.29 -306.98 -1.62 -31.77 16 21 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 25 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 2.06 5.82 -2.38 -0.01 2.05 16 31 H 0.08 2.00 6.47 -2.39 -0.02 1.99 16 32 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.06 1.55 7.93 -2.39 -0.02 1.53 16 34 H 0.05 1.57 7.42 -2.39 -0.02 1.55 16 35 H 0.10 1.58 6.31 -2.39 -0.02 1.57 16 36 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.09 0.06 7.89 -2.38 -0.02 0.04 16 38 H 0.10 -0.38 5.95 -2.39 -0.01 -0.40 16 39 H 0.11 0.36 7.89 -2.39 -0.02 0.34 16 40 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 1.24 7.93 -2.39 -0.02 1.22 16 45 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 47 H 0.10 3.28 7.93 -2.39 -0.02 3.26 16 48 H 0.40 19.68 7.90 -92.70 -0.73 18.95 16 49 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -90.71 401.15 1.08 -89.63 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.24 Total: 25.68 kcal Atomic # 6 Polarization: 29.23 SS G_CDS: 9.01 Total: 38.24 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -10.05 Total: -127.01 kcal Atomic # 8 Polarization: -72.03 SS G_CDS: -0.14 Total: -72.18 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -90.71 1.08 -89.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698993962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal (2) G-P(sol) polarization free energy of solvation -90.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds