Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99950 * 2 1 4 4 C 1.53002 * 109.46733 * 293.95099 * 3 2 1 5 5 N 1.46502 * 109.46263 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00204 * 269.99731 * 5 4 3 7 7 C 1.34778 * 119.99729 * 90.00959 * 5 4 3 8 8 O 1.21284 * 120.00033 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.99926 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.47338 * 179.97438 * 9 7 5 11 11 H 1.09000 * 110.28294 * 55.52054 * 10 9 7 12 12 C 1.54480 * 110.24604 * 177.49648 * 10 9 7 13 13 C 1.54631 * 101.76379 * 144.41844 * 12 10 9 14 14 C 1.51280 * 104.19457 * 335.20332 * 13 12 10 15 15 O 1.21283 * 124.94316 * 196.27186 * 14 13 12 16 16 N 1.34417 * 110.11945 * 16.25161 * 14 13 12 17 17 C 1.46902 * 111.00224 * 123.95245 * 2 1 3 18 18 C 1.50706 * 109.47008 * 66.04362 * 17 2 1 19 19 O 1.21294 * 119.99961 * 0.02562 * 18 17 2 20 20 N 1.34771 * 119.99926 * 179.97438 * 18 17 2 21 21 C 1.37097 * 119.99874 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99945 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00172 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00008 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00363 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46936 * 59.99747 * 25 23 21 27 27 H 1.48501 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46853 * 299.99831 * 25 23 21 29 29 H 1.09004 * 109.46855 * 60.00209 * 1 2 3 30 30 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47434 * 299.99855 * 1 2 3 32 32 H 1.09003 * 109.46682 * 173.95199 * 3 2 1 33 33 H 1.08997 * 109.47036 * 53.95213 * 3 2 1 34 34 H 1.08996 * 109.47084 * 60.00474 * 4 3 2 35 35 H 1.08997 * 109.47452 * 299.99859 * 4 3 2 36 36 H 1.08998 * 109.46965 * 270.00628 * 6 5 4 37 37 H 1.08992 * 109.47187 * 30.00741 * 6 5 4 38 38 H 1.09003 * 109.46916 * 150.00517 * 6 5 4 39 39 H 1.09005 * 109.47143 * 59.99640 * 9 7 5 40 40 H 1.09001 * 109.47062 * 299.99350 * 9 7 5 41 41 H 1.08998 * 110.96675 * 262.53368 * 12 10 9 42 42 H 1.08998 * 110.96857 * 26.29852 * 12 10 9 43 43 H 1.08997 * 110.48613 * 216.52254 * 13 12 10 44 44 H 1.09006 * 110.48585 * 93.87692 * 13 12 10 45 45 H 0.96997 * 124.35412 * 180.38773 * 16 14 13 46 46 H 1.08997 * 109.47467 * 186.04407 * 17 2 1 47 47 H 1.09003 * 109.46712 * 306.05367 * 17 2 1 48 48 H 0.96999 * 120.00380 * 0.02562 * 20 18 17 49 49 H 0.96996 * 120.00174 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1559 3.4253 -1.3180 6 6 1.3355 4.5243 -0.8030 7 6 3.3933 3.6727 -1.7917 8 8 4.0726 2.7628 -2.2178 9 6 3.9326 5.0798 -1.7919 10 6 5.3465 5.0840 -2.3767 11 1 5.3460 4.6346 -3.3697 12 6 5.8931 6.5274 -2.4433 13 6 7.3917 6.3118 -2.1293 14 6 7.4233 5.0222 -1.3390 15 8 8.3580 4.6428 -0.6657 16 7 6.2646 4.3581 -1.4911 17 6 1.9955 -0.7659 1.1376 18 6 1.6369 -2.2204 0.9729 19 8 1.0053 -2.5833 0.0030 20 7 2.0189 -3.1181 1.9028 21 6 1.6931 -4.4413 1.7527 22 1 1.1301 -4.7643 0.8895 23 6 2.0864 -5.3667 2.7116 24 7 2.7712 -4.9737 3.7622 25 14 1.6420 -7.1696 2.5075 26 1 2.2336 -7.6856 1.2470 27 1 2.1737 -7.9438 3.6578 28 1 0.1648 -7.3124 2.4558 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.0797 1.3444 0.1083 33 1 1.5610 1.9274 0.8309 34 1 0.5472 2.0845 -1.4266 35 1 2.0658 1.5015 -2.1492 36 1 0.7427 4.9463 -1.6145 37 1 0.6710 4.1481 -0.0252 38 1 1.9824 5.2962 -0.3861 39 1 3.9613 5.4581 -0.7699 40 1 3.2870 5.7163 -2.3969 41 1 5.7601 6.9491 -3.4396 42 1 5.4230 7.1577 -1.6885 43 1 7.7783 7.1361 -1.5300 44 1 7.9637 6.2081 -3.0514 45 1 6.0614 3.5083 -1.0701 46 1 3.0797 -0.6611 1.1756 47 1 1.5610 -0.3872 2.0628 48 1 2.5243 -2.8280 2.6782 49 1 3.0461 -5.6198 4.4314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699000175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -94.291437 kcal Electronic energy + Delta-G solvation = -29471.393525 eV Core-core repulsion = 25240.802139 eV Total energy + Delta-G solvation = -4230.591386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98985 -39.86791 -38.60132 -37.10385 -36.58090 -35.51746 -33.82899 -31.89250 -31.60906 -31.22210 -29.80415 -27.78596 -27.04049 -26.12874 -25.00538 -23.76753 -21.91482 -21.15566 -20.79479 -19.49225 -19.09854 -17.82932 -17.73855 -17.14734 -17.07496 -16.43032 -16.21579 -15.72944 -15.23104 -15.08972 -14.77406 -14.59387 -14.20825 -14.01652 -13.90101 -13.82956 -13.48626 -13.39668 -13.37636 -13.15358 -13.03390 -12.97997 -12.60415 -12.32241 -12.10163 -11.99295 -11.88727 -11.51379 -11.49020 -11.29586 -11.27131 -10.90598 -10.84984 -10.42107 -10.19284 -10.14002 -10.07570 -9.44594 -9.38906 -9.06245 -8.41972 -7.96032 -7.85480 -6.39053 -3.79944 2.27527 2.35984 2.59044 3.10402 3.21991 3.27544 3.31969 3.79409 3.92704 3.95525 4.05812 4.14318 4.26769 4.29909 4.55966 4.64280 4.72640 4.76563 4.85280 4.91326 4.96966 5.09758 5.15549 5.19687 5.22106 5.25899 5.27546 5.36372 5.41799 5.56919 5.62368 5.65905 5.78113 5.86707 5.95495 6.01629 6.19169 6.30454 6.51988 6.55924 6.82186 7.01495 7.23818 7.37723 7.57471 7.82993 8.02824 8.08595 8.64381 9.20454 9.56943 10.08819 10.78660 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.002009 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.034756 B =13936.432039 C =15364.488820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.118 3.882 5 N -0.616 5.616 6 C 0.075 3.925 7 C 0.508 3.492 8 O -0.528 6.528 9 C -0.151 4.151 10 C 0.146 3.854 11 H 0.091 0.909 12 C -0.129 4.129 13 C -0.157 4.157 14 C 0.515 3.485 15 O -0.537 6.537 16 N -0.718 5.718 17 C 0.048 3.952 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.416 0.584 46 H 0.088 0.912 47 H 0.047 0.953 48 H 0.392 0.608 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 29.734 -9.711 31.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.239 5.239 3 C -0.086 4.086 4 C -0.005 4.005 5 N -0.349 5.349 6 C -0.068 4.068 7 C 0.295 3.705 8 O -0.404 6.404 9 C -0.192 4.192 10 C 0.039 3.961 11 H 0.109 0.891 12 C -0.167 4.167 13 C -0.197 4.197 14 C 0.301 3.699 15 O -0.414 6.414 16 N -0.375 5.375 17 C -0.084 4.084 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.032 0.968 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.256 0.744 46 H 0.106 0.894 47 H 0.065 0.935 48 H 0.225 0.775 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.277 28.551 -10.555 30.441 hybrid contribution -0.462 -0.634 1.516 1.707 sum -0.186 27.917 -9.039 29.344 Atomic orbital electron populations 1.22601 0.86841 1.04666 0.98705 1.61456 1.08549 1.10860 1.43085 1.22423 1.00794 0.89114 0.96235 1.21502 0.99000 0.80656 0.99306 1.47888 1.15790 1.08818 1.62446 1.21852 0.95758 0.89685 0.99498 1.20658 0.81200 0.91132 0.77469 1.90780 1.57064 1.46578 1.46018 1.22151 0.97209 0.95428 1.04376 1.21440 0.87567 0.92334 0.94712 0.89077 1.22716 0.94711 0.95324 1.03958 1.22355 0.97923 0.97259 1.02140 1.20892 0.81975 0.86412 0.80651 1.90777 1.36505 1.72490 1.41650 1.46378 1.16544 1.24977 1.49585 1.21855 1.00726 0.94181 0.91591 1.19705 0.85474 0.86604 0.85235 1.90479 1.43999 1.80131 1.31562 1.41858 1.49387 1.07352 1.21470 1.19646 1.32988 0.82291 1.07904 0.87951 1.25268 0.96831 1.00584 0.95317 1.69607 1.37987 1.35861 1.10906 0.85912 0.78841 0.81698 0.77724 1.19867 1.21003 1.19951 0.92176 0.88428 0.96819 0.90677 0.95331 0.90303 0.88558 0.92220 0.90763 0.90965 0.88036 0.87220 0.88818 0.89658 0.88003 0.87704 0.74358 0.89413 0.93533 0.77497 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.06 0.54 0.85 16 2 N -0.52 -8.72 4.50 -244.36 -1.10 -9.82 16 3 C 0.04 0.57 5.28 -3.82 -0.02 0.55 16 4 C 0.12 1.31 5.33 -4.04 -0.02 1.28 16 5 N -0.62 -5.10 2.87 -181.58 -0.52 -5.62 16 6 C 0.08 0.32 10.24 59.85 0.61 0.94 16 7 C 0.51 4.61 7.48 -10.99 -0.08 4.53 16 8 O -0.53 -7.09 14.46 5.55 0.08 -7.01 16 9 C -0.15 -0.70 3.87 -27.88 -0.11 -0.81 16 10 C 0.15 0.85 3.01 -67.01 -0.20 0.65 16 11 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 12 C -0.13 -0.40 6.69 -25.10 -0.17 -0.56 16 13 C -0.16 -0.87 6.86 -26.74 -0.18 -1.05 16 14 C 0.51 5.46 8.43 -10.86 -0.09 5.36 16 15 O -0.54 -8.37 18.03 5.55 0.10 -8.27 16 16 N -0.72 -6.73 5.60 -52.76 -0.30 -7.03 16 17 C 0.05 0.89 5.45 -4.97 -0.03 0.86 16 18 C 0.44 10.72 7.47 -10.99 -0.08 10.63 16 19 O -0.58 -15.72 13.91 5.55 0.08 -15.64 16 20 N -0.56 -14.60 5.29 -10.96 -0.06 -14.65 16 21 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.97 13.05 55.50 0.72 -24.24 16 25 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.79 6.47 -51.93 -0.34 0.46 16 30 H 0.10 1.90 5.83 -51.93 -0.30 1.60 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.08 0.76 6.48 -51.93 -0.34 0.43 16 35 H 0.10 1.33 7.42 -51.93 -0.39 0.94 16 36 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 38 H 0.07 0.17 6.44 -51.93 -0.33 -0.16 16 39 H 0.10 0.36 7.40 -51.93 -0.38 -0.02 16 40 H 0.11 0.20 8.11 -51.93 -0.42 -0.22 16 41 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.08 0.15 7.91 -51.93 -0.41 -0.26 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.42 4.67 7.89 -40.82 -0.32 4.35 16 46 H 0.09 1.54 7.93 -51.93 -0.41 1.12 16 47 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 48 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 49 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -37.22 399.03 -7.76 -44.98 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.68 Total: 9.79 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -0.08 Total: 15.13 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -1.25 Total: -61.36 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: 0.26 Total: -30.92 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.22 -7.76 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699000175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.307 kcal (2) G-P(sol) polarization free energy of solvation -37.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds