Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99950 * 2 1 4 4 C 1.53002 * 109.46733 * 293.95099 * 3 2 1 5 5 N 1.46502 * 109.46263 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00204 * 269.99731 * 5 4 3 7 7 C 1.34778 * 119.99729 * 90.00959 * 5 4 3 8 8 O 1.21284 * 120.00033 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.99926 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.47338 * 179.97438 * 9 7 5 11 11 H 1.09000 * 110.28294 * 55.52054 * 10 9 7 12 12 C 1.54480 * 110.24604 * 177.49648 * 10 9 7 13 13 C 1.54631 * 101.76379 * 144.41844 * 12 10 9 14 14 C 1.51280 * 104.19457 * 335.20332 * 13 12 10 15 15 O 1.21283 * 124.94316 * 196.27186 * 14 13 12 16 16 N 1.34417 * 110.11945 * 16.25161 * 14 13 12 17 17 C 1.46902 * 111.00224 * 123.95245 * 2 1 3 18 18 C 1.50706 * 109.47008 * 66.04362 * 17 2 1 19 19 O 1.21294 * 119.99961 * 0.02562 * 18 17 2 20 20 N 1.34771 * 119.99926 * 179.97438 * 18 17 2 21 21 C 1.37097 * 119.99874 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99945 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00172 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00008 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00363 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46936 * 59.99747 * 25 23 21 27 27 H 1.48501 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46853 * 299.99831 * 25 23 21 29 29 H 1.09004 * 109.46855 * 60.00209 * 1 2 3 30 30 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47434 * 299.99855 * 1 2 3 32 32 H 1.09003 * 109.46682 * 173.95199 * 3 2 1 33 33 H 1.08997 * 109.47036 * 53.95213 * 3 2 1 34 34 H 1.08996 * 109.47084 * 60.00474 * 4 3 2 35 35 H 1.08997 * 109.47452 * 299.99859 * 4 3 2 36 36 H 1.08998 * 109.46965 * 270.00628 * 6 5 4 37 37 H 1.08992 * 109.47187 * 30.00741 * 6 5 4 38 38 H 1.09003 * 109.46916 * 150.00517 * 6 5 4 39 39 H 1.09005 * 109.47143 * 59.99640 * 9 7 5 40 40 H 1.09001 * 109.47062 * 299.99350 * 9 7 5 41 41 H 1.08998 * 110.96675 * 262.53368 * 12 10 9 42 42 H 1.08998 * 110.96857 * 26.29852 * 12 10 9 43 43 H 1.08997 * 110.48613 * 216.52254 * 13 12 10 44 44 H 1.09006 * 110.48585 * 93.87692 * 13 12 10 45 45 H 0.96997 * 124.35412 * 180.38773 * 16 14 13 46 46 H 1.08997 * 109.47467 * 186.04407 * 17 2 1 47 47 H 1.09003 * 109.46712 * 306.05367 * 17 2 1 48 48 H 0.96999 * 120.00380 * 0.02562 * 20 18 17 49 49 H 0.96996 * 120.00174 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1559 3.4253 -1.3180 6 6 1.3355 4.5243 -0.8030 7 6 3.3933 3.6727 -1.7917 8 8 4.0726 2.7628 -2.2178 9 6 3.9326 5.0798 -1.7919 10 6 5.3465 5.0840 -2.3767 11 1 5.3460 4.6346 -3.3697 12 6 5.8931 6.5274 -2.4433 13 6 7.3917 6.3118 -2.1293 14 6 7.4233 5.0222 -1.3390 15 8 8.3580 4.6428 -0.6657 16 7 6.2646 4.3581 -1.4911 17 6 1.9955 -0.7659 1.1376 18 6 1.6369 -2.2204 0.9729 19 8 1.0053 -2.5833 0.0030 20 7 2.0189 -3.1181 1.9028 21 6 1.6931 -4.4413 1.7527 22 1 1.1301 -4.7643 0.8895 23 6 2.0864 -5.3667 2.7116 24 7 2.7712 -4.9737 3.7622 25 14 1.6420 -7.1696 2.5075 26 1 2.2336 -7.6856 1.2470 27 1 2.1737 -7.9438 3.6578 28 1 0.1648 -7.3124 2.4558 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.0797 1.3444 0.1083 33 1 1.5610 1.9274 0.8309 34 1 0.5472 2.0845 -1.4266 35 1 2.0658 1.5015 -2.1492 36 1 0.7427 4.9463 -1.6145 37 1 0.6710 4.1481 -0.0252 38 1 1.9824 5.2962 -0.3861 39 1 3.9613 5.4581 -0.7699 40 1 3.2870 5.7163 -2.3969 41 1 5.7601 6.9491 -3.4396 42 1 5.4230 7.1577 -1.6885 43 1 7.7783 7.1361 -1.5300 44 1 7.9637 6.2081 -3.0514 45 1 6.0614 3.5083 -1.0701 46 1 3.0797 -0.6611 1.1756 47 1 1.5610 -0.3872 2.0628 48 1 2.5243 -2.8280 2.6782 49 1 3.0461 -5.6198 4.4314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699000175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -125.491172 kcal Electronic energy + Delta-G solvation = -29472.746447 eV Core-core repulsion = 25240.802139 eV Total energy + Delta-G solvation = -4231.944308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62911 -40.67699 -40.30249 -38.25600 -37.54991 -36.43381 -35.83812 -33.31399 -32.54406 -32.10658 -30.76220 -29.19261 -27.57309 -27.19575 -26.41015 -24.94176 -22.63075 -22.04037 -21.47516 -21.04171 -20.10370 -19.85927 -18.37138 -17.94741 -17.83147 -17.65935 -17.16624 -16.73153 -16.54576 -16.43475 -16.11899 -15.73949 -15.65454 -15.22681 -15.06621 -14.77830 -14.45633 -14.29125 -14.11875 -13.96005 -13.78587 -13.62328 -13.47324 -13.38408 -13.13795 -13.12085 -12.98373 -12.67190 -12.56621 -12.53204 -12.44166 -12.31103 -12.14040 -11.88950 -11.85697 -11.47551 -10.93639 -10.81457 -10.35804 -10.10686 -10.02947 -9.69429 -9.23874 -8.48213 -5.97348 1.38051 1.39633 1.50973 1.58554 1.63021 1.93992 2.02114 2.27814 2.45598 2.83096 3.18051 3.34836 3.39919 3.54147 3.71500 3.85214 3.94692 4.06256 4.18430 4.23492 4.31790 4.33354 4.39748 4.42607 4.46135 4.47479 4.58800 4.62550 4.64291 4.72984 4.82252 4.88589 4.90803 4.97698 5.02114 5.14551 5.20010 5.28171 5.38673 5.48086 5.82471 5.84403 6.03133 6.09899 6.16883 6.42557 6.58093 7.10440 7.18367 7.23596 7.53401 8.09072 8.69065 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.002009 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.034756 B =13936.432039 C =15364.488820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.125 3.875 5 N -0.614 5.614 6 C 0.068 3.932 7 C 0.497 3.503 8 O -0.584 6.584 9 C -0.138 4.138 10 C 0.136 3.864 11 H 0.080 0.920 12 C -0.111 4.111 13 C -0.149 4.149 14 C 0.499 3.501 15 O -0.603 6.603 16 N -0.722 5.722 17 C 0.060 3.940 18 C 0.441 3.559 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.269 1.269 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.401 0.599 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.395 0.605 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 33.123 -9.878 34.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.076 4.076 4 C 0.002 3.998 5 N -0.347 5.347 6 C -0.074 4.074 7 C 0.287 3.713 8 O -0.464 6.464 9 C -0.178 4.178 10 C 0.031 3.969 11 H 0.098 0.902 12 C -0.148 4.148 13 C -0.189 4.189 14 C 0.287 3.713 15 O -0.485 6.485 16 N -0.375 5.375 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.498 6.498 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.194 1.194 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.169 0.831 41 H 0.142 0.858 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.239 0.761 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.229 0.771 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.158 32.020 -10.731 33.790 hybrid contribution -0.082 -1.665 1.519 2.255 sum -1.240 30.355 -9.212 31.747 Atomic orbital electron populations 1.22486 0.86138 1.02548 1.00996 1.61390 1.09410 1.13125 1.42570 1.22382 0.99616 0.87315 0.98253 1.21232 0.99733 0.82130 0.96744 1.47997 1.16078 1.08493 1.62087 1.22171 0.96037 0.88818 1.00340 1.21550 0.80891 0.92511 0.76306 1.90765 1.58525 1.48633 1.48467 1.22204 0.96528 0.92778 1.06264 1.21731 0.87895 0.93735 0.93495 0.90234 1.22787 0.92101 0.93397 1.06543 1.22408 1.00409 0.94416 1.01695 1.21883 0.81215 0.88030 0.80139 1.90725 1.38710 1.74394 1.44660 1.46668 1.17133 1.24437 1.49255 1.21691 1.01470 0.90534 0.93415 1.20704 0.83828 0.88661 0.83951 1.90455 1.45183 1.81394 1.32800 1.41939 1.49993 1.07118 1.22151 1.19635 1.34507 0.83977 1.08127 0.90196 1.26086 0.96240 1.04508 0.94657 1.69675 1.38050 1.37318 1.11230 0.84963 0.78732 0.76522 0.77958 1.19845 1.19470 1.19426 0.89649 0.92666 0.94656 0.92455 0.92994 0.88493 0.92071 0.90233 0.90538 0.88361 0.86064 0.83086 0.85798 0.87241 0.86715 0.86695 0.76148 0.88505 0.91189 0.77133 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.96 127.69 1.14 1.94 16 2 N -0.54 -18.15 4.50 -927.02 -4.17 -22.32 16 3 C 0.05 1.34 5.28 86.30 0.46 1.79 16 4 C 0.13 2.65 5.33 86.38 0.46 3.11 16 5 N -0.61 -8.77 2.87 -846.77 -2.43 -11.20 16 6 C 0.07 0.29 10.24 127.77 1.31 1.60 16 7 C 0.50 8.33 7.48 87.66 0.66 8.98 16 8 O -0.58 -16.18 14.46 -3.04 -0.04 -16.22 16 9 C -0.14 -0.79 3.87 29.85 0.12 -0.68 16 10 C 0.14 1.30 3.01 45.44 0.14 1.43 16 11 H 0.08 0.96 8.00 -2.39 -0.02 0.94 16 12 C -0.11 -0.21 6.69 31.65 0.21 0.00 16 13 C -0.15 -1.35 6.86 30.59 0.21 -1.14 16 14 C 0.50 10.76 8.43 87.90 0.74 11.51 16 15 O -0.60 -20.00 18.03 -3.04 -0.05 -20.06 16 16 N -0.72 -13.65 5.60 -439.43 -2.46 -16.11 16 17 C 0.06 2.24 5.45 85.56 0.47 2.70 16 18 C 0.44 21.94 7.47 87.66 0.66 22.59 16 19 O -0.61 -34.72 13.91 -3.07 -0.04 -34.77 16 20 N -0.57 -30.69 5.29 -306.99 -1.62 -32.31 16 21 C -0.33 -19.45 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 23 C -0.02 -0.84 5.50 84.92 0.47 -0.38 16 24 N -0.92 -51.21 13.05 21.66 0.28 -50.92 16 25 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 H 0.08 2.13 6.47 -2.39 -0.02 2.11 16 30 H 0.05 2.19 5.83 -2.39 -0.01 2.18 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 33 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 34 H 0.10 1.66 6.48 -2.39 -0.02 1.65 16 35 H 0.06 1.74 7.42 -2.39 -0.02 1.72 16 36 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.08 0.35 8.07 -2.39 -0.02 0.33 16 38 H 0.10 -0.06 6.44 -2.39 -0.02 -0.07 16 39 H 0.12 0.30 7.40 -2.38 -0.02 0.28 16 40 H 0.15 -0.32 8.11 -2.39 -0.02 -0.34 16 41 H 0.12 -0.40 8.14 -2.39 -0.02 -0.41 16 42 H 0.11 -0.24 7.91 -2.39 -0.02 -0.25 16 43 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.40 9.66 7.89 -92.71 -0.73 8.93 16 46 H 0.10 3.41 7.93 -2.39 -0.02 3.39 16 47 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 48 H 0.40 20.15 7.90 -92.71 -0.73 19.42 16 49 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -88.71 399.03 -1.16 -89.87 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.48 Total: 33.13 kcal Atomic # 6 Polarization: 27.00 SS G_CDS: 7.84 Total: 34.84 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -10.40 Total: -132.87 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: -0.14 Total: -71.05 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -88.71 -1.16 -89.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699000175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.621 kcal (2) G-P(sol) polarization free energy of solvation -88.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds