Wall clock time and date at job start Sat Apr 11 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47414 * 2 1 4 4 C 1.46502 * 120.00179 * 83.42344 * 3 2 1 5 5 C 1.52999 * 109.47158 * 270.00281 * 4 3 2 6 6 N 1.46898 * 109.46975 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00217 * 180.02562 * 6 5 4 8 8 C 1.50691 * 109.47652 * 179.97438 * 7 6 5 9 9 O 1.21300 * 119.99570 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00325 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99938 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00370 * 359.97438 * 11 10 8 13 13 C 1.38960 * 119.99836 * 179.72673 * 11 10 8 14 14 N 1.31415 * 119.99760 * 0.27199 * 13 11 10 15 15 Si 1.86793 * 120.00183 * 180.27642 * 13 11 10 16 16 H 1.48499 * 109.47427 * 59.99719 * 15 13 11 17 17 H 1.48498 * 109.47716 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47147 * 299.99971 * 15 13 11 19 19 C 1.34782 * 120.00085 * 263.42310 * 3 2 1 20 20 O 1.21279 * 119.99799 * 174.22829 * 19 3 2 21 21 C 1.50700 * 119.99873 * 354.23714 * 19 3 2 22 22 H 1.09003 * 109.66891 * 326.54200 * 21 19 3 23 23 C 1.53347 * 109.67160 * 206.01207 * 21 19 3 24 24 C 1.52907 * 108.68290 * 172.74618 * 23 21 19 25 25 N 1.45755 * 110.49818 * 50.72509 * 24 23 21 26 26 C 1.33357 * 124.10351 * 340.95917 * 25 24 23 27 27 O 1.21281 * 118.24319 * 182.22437 * 26 25 24 28 28 C 1.50172 * 123.51112 * 2.19958 * 26 25 24 29 29 H 1.09003 * 109.47455 * 172.30164 * 1 2 3 30 30 H 1.09003 * 109.46860 * 292.29887 * 1 2 3 31 31 H 1.09006 * 109.47032 * 52.29922 * 1 2 3 32 32 H 1.09001 * 109.46644 * 239.99900 * 2 1 3 33 33 H 1.09004 * 109.46974 * 120.00077 * 2 1 3 34 34 H 1.09005 * 109.47305 * 149.99866 * 4 3 2 35 35 H 1.09003 * 109.46650 * 30.00026 * 4 3 2 36 36 H 1.08996 * 109.47352 * 59.99425 * 5 4 3 37 37 H 1.09003 * 109.47131 * 299.99450 * 5 4 3 38 38 H 1.00903 * 110.99962 * 303.94783 * 6 5 4 39 39 H 1.09002 * 109.46964 * 59.99172 * 7 6 5 40 40 H 1.08998 * 109.46805 * 299.99729 * 7 6 5 41 41 H 0.97003 * 120.00331 * 0.02562 * 10 8 7 42 42 H 0.97002 * 119.99382 * 179.97438 * 14 13 11 43 43 H 1.08998 * 109.59974 * 292.48656 * 23 21 19 44 44 H 1.08994 * 109.60479 * 52.97763 * 23 21 19 45 45 H 1.08995 * 109.28604 * 290.41620 * 24 23 21 46 46 H 1.09005 * 109.30648 * 171.04197 * 24 23 21 47 47 H 0.96993 * 117.95102 * 160.93690 * 25 24 23 48 48 H 1.08996 * 109.40573 * 222.28731 * 28 26 25 49 49 H 1.09004 * 109.39896 * 102.54578 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1256 2.1202 1.2604 5 6 0.8119 2.8552 1.5340 6 7 0.9197 3.5967 2.7974 7 6 -0.3265 4.3160 3.0937 8 6 -0.1786 5.0627 4.3942 9 8 0.8624 5.0013 5.0138 10 7 -1.2029 5.7987 4.8690 11 6 -1.0685 6.4775 6.0525 12 1 -0.1419 6.4222 6.6046 13 6 -2.1227 7.2410 6.5392 14 7 -3.2503 7.3079 5.8677 15 14 -1.9369 8.1721 8.1478 16 1 -0.8162 9.1397 8.0332 17 1 -3.1942 8.9046 8.4440 18 1 -1.6522 7.2128 9.2451 19 6 2.3691 1.9719 -1.1596 20 8 2.6732 3.1459 -1.1742 21 6 2.3831 1.1738 -2.4378 22 1 2.6745 0.1452 -2.2249 23 6 3.3759 1.7985 -3.4255 24 6 3.5080 0.8751 -4.6371 25 7 2.1926 0.5289 -5.1609 26 6 1.0582 0.6447 -4.4693 27 8 0.0260 0.2868 -4.9959 28 6 0.9907 1.1939 -3.0733 29 1 -0.3634 -1.0184 -0.1377 30 1 -0.3633 0.3899 0.9508 31 1 -0.3633 0.6285 -0.8132 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9385 2.8430 1.1897 35 1 2.3284 1.4236 2.0738 36 1 -0.0009 2.1324 1.6045 37 1 0.6090 3.5518 0.7205 38 1 1.1713 2.9821 3.5571 39 1 -1.1469 3.6030 3.1757 40 1 -0.5379 5.0223 2.2909 41 1 -2.0356 5.8475 4.3738 42 1 -3.9863 7.8405 6.2077 43 1 3.0078 2.7727 -3.7470 44 1 4.3474 1.9124 -2.9448 45 1 4.0287 -0.0354 -4.3408 46 1 4.0836 1.3793 -5.4135 47 1 2.1388 0.1937 -6.0695 48 1 0.3116 0.5847 -2.4769 49 1 0.6220 2.2193 -3.1051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699175886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:48 Heat of formation + Delta-G solvation = -137.507281 kcal Electronic energy + Delta-G solvation = -29619.517372 eV Core-core repulsion = 25387.052007 eV Total energy + Delta-G solvation = -4232.465365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90012 -40.61937 -40.15819 -37.88728 -37.23136 -36.50774 -35.80689 -34.23042 -33.29218 -31.95444 -30.68694 -30.41942 -27.93684 -26.42226 -25.39740 -24.62724 -23.76750 -22.99032 -21.17161 -20.48133 -19.96102 -19.79982 -18.42895 -18.36144 -17.90269 -17.43610 -17.13548 -16.94858 -16.51442 -16.37594 -16.06446 -15.90413 -15.41976 -15.26067 -15.23505 -15.00502 -14.70791 -14.65909 -14.34482 -14.14873 -13.94710 -13.62271 -13.54611 -13.32191 -13.04295 -12.89687 -12.83194 -12.78187 -12.56164 -12.44610 -12.42736 -12.14244 -12.12062 -12.01465 -11.64336 -11.51373 -11.25049 -10.61008 -10.40692 -10.08138 -10.03826 -9.78604 -9.37372 -8.47805 -5.97075 1.39325 1.41251 1.45816 1.52572 1.56879 1.86226 2.02205 2.28827 2.30707 2.95160 3.18981 3.26884 3.53675 3.59199 3.60603 3.71513 3.84550 4.03712 4.11029 4.14875 4.24523 4.27842 4.33971 4.37857 4.43400 4.44868 4.47951 4.55760 4.63947 4.70821 4.76763 4.83163 4.87266 4.95002 4.99243 5.05929 5.20749 5.39316 5.41107 5.50318 5.80984 5.83264 6.04765 6.27504 6.33776 6.41282 6.57686 7.10281 7.12421 7.15281 7.53355 8.08221 8.69346 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.001788 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.860675 B =15656.880201 C =15863.000334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.095 3.905 3 N -0.604 5.604 4 C 0.124 3.876 5 C 0.054 3.946 6 N -0.682 5.682 7 C 0.068 3.932 8 C 0.438 3.562 9 O -0.621 6.621 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.269 1.269 19 C 0.515 3.485 20 O -0.573 6.573 21 C -0.101 4.101 22 H 0.134 0.866 23 C -0.121 4.121 24 C 0.112 3.888 25 N -0.710 5.710 26 C 0.525 3.475 27 O -0.604 6.604 28 C -0.124 4.124 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.349 0.651 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.407 0.593 48 H 0.117 0.883 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -21.247 -21.680 32.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 N -0.336 5.336 4 C 0.000 4.000 5 C -0.076 4.076 6 N -0.315 5.315 7 C -0.065 4.065 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.194 1.194 19 C 0.303 3.697 20 O -0.452 6.452 21 C -0.122 4.122 22 H 0.151 0.849 23 C -0.159 4.159 24 C -0.011 4.011 25 N -0.360 5.360 26 C 0.312 3.688 27 O -0.486 6.486 28 C -0.164 4.164 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.123 0.877 47 H 0.244 0.756 48 H 0.135 0.865 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.156 -20.131 -21.555 31.901 hybrid contribution -1.309 0.237 0.605 1.461 sum 10.848 -19.894 -20.950 30.860 Atomic orbital electron populations 1.22415 0.95813 1.03485 1.02100 1.22003 0.94559 0.80460 1.05655 1.48083 1.64280 1.15193 1.06031 1.21262 0.96804 0.96024 0.85904 1.22327 0.98108 0.95990 0.91151 1.59897 1.32459 1.33395 1.05755 1.21481 0.92338 0.98009 0.94641 1.20792 0.84102 0.83773 0.88816 1.90486 1.29935 1.67970 1.62409 1.41930 1.14555 1.43016 1.21443 1.19659 1.01012 1.26268 0.99586 0.90168 1.26095 0.94320 0.98153 1.02849 1.69676 1.04315 1.41414 1.40706 0.84953 0.77818 0.78093 0.77252 1.19809 1.19464 1.19449 1.20993 0.75785 0.87200 0.85675 1.90753 1.49823 1.17991 1.86620 1.21499 0.96509 1.02286 0.91919 0.84870 1.21770 1.00254 0.99032 0.94873 1.21636 0.82747 1.00095 0.96593 1.45510 1.07009 1.65380 1.18138 1.20097 0.83118 0.77113 0.88443 1.90773 1.34601 1.52102 1.71111 1.21668 0.97878 1.04112 0.92772 0.89396 0.92829 0.93000 0.87457 0.88261 0.91438 0.88134 0.93231 0.92795 0.83167 0.91274 0.88763 0.77006 0.91255 0.91739 0.88339 0.88470 0.87736 0.75647 0.86492 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.47 71.98 0.68 -1.02 16 2 C 0.09 0.72 5.93 86.38 0.51 1.24 16 3 N -0.60 -9.24 2.48 -821.81 -2.04 -11.28 16 4 C 0.12 2.53 5.66 86.38 0.49 3.02 16 5 C 0.05 1.34 5.88 86.30 0.51 1.85 16 6 N -0.68 -22.24 6.13 -517.95 -3.17 -25.41 16 7 C 0.07 2.44 6.17 85.55 0.53 2.97 16 8 C 0.44 21.42 7.82 87.66 0.69 22.11 16 9 O -0.62 -35.07 15.78 -3.09 -0.05 -35.12 16 10 N -0.57 -30.11 5.29 -306.99 -1.62 -31.73 16 11 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 12 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.92 -50.41 13.05 21.67 0.28 -50.12 16 15 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 C 0.51 9.42 6.74 87.66 0.59 10.01 16 20 O -0.57 -16.27 15.92 -3.03 -0.05 -16.32 16 21 C -0.10 -1.04 1.81 -11.40 -0.02 -1.06 16 22 H 0.13 0.54 6.16 -2.39 -0.01 0.52 16 23 C -0.12 -1.08 4.74 30.68 0.15 -0.93 16 24 C 0.11 0.36 7.17 86.49 0.62 0.98 16 25 N -0.71 -6.28 5.45 -467.33 -2.55 -8.83 16 26 C 0.52 8.42 7.71 87.71 0.68 9.09 16 27 O -0.60 -15.42 17.78 -3.03 -0.05 -15.48 16 28 C -0.12 -1.67 5.29 29.71 0.16 -1.51 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.65 6.39 -2.39 -0.02 0.63 16 31 H 0.05 0.61 6.14 -2.38 -0.01 0.60 16 32 H 0.11 0.30 5.58 -2.39 -0.01 0.29 16 33 H 0.10 0.49 7.99 -2.38 -0.02 0.47 16 34 H 0.07 1.78 7.51 -2.38 -0.02 1.77 16 35 H 0.10 1.59 7.96 -2.39 -0.02 1.57 16 36 H 0.05 1.05 6.11 -2.39 -0.01 1.03 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.35 11.19 8.43 -89.69 -0.76 10.43 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 42 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 47 H 0.41 2.89 8.80 -92.71 -0.82 2.08 16 48 H 0.12 1.39 5.41 -2.39 -0.01 1.38 16 49 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 Total: -1.00 -82.87 395.32 -1.66 -84.53 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -1.29 Total: 36.46 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 6.85 Total: 27.85 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -9.10 Total: -127.37 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: -0.15 Total: -66.91 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -82.87 -1.66 -84.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699175886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.975 kcal (2) G-P(sol) polarization free energy of solvation -82.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds