Wall clock time and date at job start Sat Apr 11 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.46497 * 119.99844 * 95.02199 * 3 2 1 5 5 C 1.52997 * 109.47289 * 269.99932 * 4 3 2 6 6 N 1.46899 * 109.47643 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00405 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47287 * 180.02562 * 7 6 5 9 9 O 1.21297 * 119.99746 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99912 * 179.72553 * 8 7 6 11 11 C 1.37103 * 119.99953 * 180.27440 * 10 8 7 12 12 H 1.08006 * 119.99891 * 359.97438 * 11 10 8 13 13 C 1.38943 * 120.00119 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00045 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46743 * 60.00517 * 15 13 11 17 17 H 1.48500 * 109.46852 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47249 * 300.00184 * 15 13 11 19 19 C 1.34773 * 119.99641 * 275.01943 * 3 2 1 20 20 O 1.21284 * 119.99826 * 174.78933 * 19 3 2 21 21 C 1.50699 * 120.00608 * 354.79344 * 19 3 2 22 22 H 1.09005 * 109.66958 * 34.31173 * 21 19 3 23 23 C 1.53339 * 109.67902 * 154.81525 * 21 19 3 24 24 C 1.52914 * 108.67950 * 187.26661 * 23 21 19 25 25 N 1.45758 * 110.48491 * 309.24686 * 24 23 21 26 26 C 1.33354 * 124.10769 * 19.09922 * 25 24 23 27 27 O 1.21281 * 118.24776 * 177.73260 * 26 25 24 28 28 C 1.50177 * 123.50483 * 357.72846 * 26 25 24 29 29 H 1.08994 * 109.47350 * 299.99602 * 1 2 3 30 30 H 1.08997 * 109.47044 * 60.00387 * 1 2 3 31 31 H 1.09007 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47174 * 239.99819 * 2 1 3 33 33 H 1.09010 * 109.47184 * 119.99828 * 2 1 3 34 34 H 1.09007 * 109.46749 * 149.99836 * 4 3 2 35 35 H 1.09002 * 109.47577 * 30.00011 * 4 3 2 36 36 H 1.09000 * 109.47034 * 59.99638 * 5 4 3 37 37 H 1.09002 * 109.46875 * 300.00509 * 5 4 3 38 38 H 1.00904 * 110.99632 * 303.95953 * 6 5 4 39 39 H 1.08996 * 109.47159 * 59.99461 * 7 6 5 40 40 H 1.09001 * 109.46817 * 299.99806 * 7 6 5 41 41 H 0.96996 * 120.00258 * 0.27320 * 10 8 7 42 42 H 0.96996 * 120.00225 * 179.97438 * 14 13 11 43 43 H 1.08999 * 109.60381 * 307.02452 * 23 21 19 44 44 H 1.09002 * 109.60505 * 67.50383 * 23 21 19 45 45 H 1.08999 * 109.30370 * 69.55608 * 24 23 21 46 46 H 1.08991 * 109.30514 * 189.14039 * 24 23 21 47 47 H 0.96997 * 117.94780 * 199.07197 * 25 24 23 48 48 H 1.09003 * 109.41542 * 257.48711 * 28 26 25 49 49 H 1.08998 * 109.39049 * 137.74842 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3671 2.0348 1.2638 5 6 1.1338 2.7413 1.8301 6 7 1.4837 3.3972 3.0971 7 6 0.3209 4.0869 3.6716 8 6 0.7177 4.7467 4.9671 9 8 1.8570 4.6512 5.3722 10 7 -0.1921 5.4469 5.6730 11 6 0.1703 6.0519 6.8487 12 1 1.1848 5.9670 7.2095 13 6 -0.7675 6.7743 7.5762 14 7 -2.0019 6.8772 7.1376 15 14 -0.2739 7.5980 9.1785 16 1 0.8104 8.5785 8.9174 17 1 -1.4477 8.3008 9.7559 18 1 0.2082 6.5700 10.1356 19 6 2.1466 2.0505 -1.1627 20 8 2.4598 3.2222 -1.1566 21 6 1.9008 1.3432 -2.4705 22 1 1.1094 0.6043 -2.3449 23 6 1.4902 2.3628 -3.5398 24 6 1.0718 1.6074 -4.8017 25 7 2.0935 0.6385 -5.1786 26 6 3.0333 0.1822 -4.3498 27 8 3.8064 -0.6554 -4.7641 28 6 3.1855 0.6501 -2.9309 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.1565 2.7659 1.0890 35 1 2.7161 1.2866 1.9757 36 1 0.3445 2.0102 2.0049 37 1 0.7849 3.4894 1.1183 38 1 1.8709 2.7347 3.7523 39 1 -0.4735 3.3648 3.8596 40 1 -0.0343 4.8441 2.9726 41 1 -1.1033 5.5229 5.3492 42 1 -2.6567 7.3812 7.6456 43 1 0.6529 2.9579 -3.1753 44 1 2.3338 3.0147 -3.7666 45 1 0.1327 1.0865 -4.6152 46 1 0.9342 2.3170 -5.6175 47 1 2.0893 0.3044 -6.0892 48 1 4.0177 1.3512 -2.8680 49 1 3.3858 -0.2062 -2.2870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699175887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:52 Heat of formation + Delta-G solvation = -110.564830 kcal Electronic energy + Delta-G solvation = -29483.230749 eV Core-core repulsion = 25251.933697 eV Total energy + Delta-G solvation = -4231.297053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25561 -39.91136 -38.29456 -37.05215 -36.49310 -35.32451 -33.89467 -33.57874 -31.40254 -31.15500 -30.23966 -29.22662 -26.54601 -25.48682 -24.13706 -23.86684 -23.15367 -22.03767 -19.81707 -19.47485 -19.15276 -17.89882 -17.85906 -17.64996 -16.77699 -16.46371 -16.22883 -15.77939 -15.48211 -15.29668 -14.75631 -14.62868 -14.42986 -14.32118 -14.21629 -14.04484 -13.89773 -13.63642 -13.39501 -13.27961 -12.93102 -12.65039 -12.37722 -12.24386 -12.09110 -11.99860 -11.73838 -11.54306 -11.52853 -11.51220 -11.48734 -11.06774 -10.91190 -10.62035 -10.43830 -10.21049 -9.87135 -9.61325 -9.49590 -9.06104 -8.45596 -8.07033 -7.95610 -6.41189 -3.82077 2.12681 2.25814 2.55526 2.77621 3.20705 3.26205 3.30842 3.81972 3.91208 4.02780 4.10134 4.13208 4.21254 4.35901 4.42674 4.55489 4.68074 4.72313 4.75489 4.87892 4.93099 4.99496 5.08458 5.13314 5.17657 5.20889 5.26044 5.29822 5.32885 5.38428 5.43488 5.61531 5.72381 5.78841 5.84640 5.94516 6.00392 6.21209 6.23945 6.29003 6.78985 7.03014 7.17572 7.55535 7.63767 7.70714 7.85013 8.06539 8.61716 9.18194 9.54602 10.06134 10.76506 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001703 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.191513 B =16435.089816 C =16577.366269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.117 3.883 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.054 3.946 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.520 3.480 20 O -0.523 6.523 21 C -0.114 4.114 22 H 0.102 0.898 23 C -0.120 4.120 24 C 0.110 3.890 25 N -0.720 5.720 26 C 0.525 3.475 27 O -0.555 6.555 28 C -0.124 4.124 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.401 0.599 48 H 0.109 0.891 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -16.041 -23.912 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 N -0.343 5.343 4 C -0.006 4.006 5 C -0.083 4.083 6 N -0.299 5.299 7 C -0.079 4.079 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.307 3.693 20 O -0.398 6.398 21 C -0.135 4.135 22 H 0.120 0.880 23 C -0.158 4.158 24 C -0.015 4.015 25 N -0.373 5.373 26 C 0.312 3.688 27 O -0.433 6.433 28 C -0.164 4.164 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.236 0.764 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.886 -15.142 -23.804 28.275 hybrid contribution -1.265 -0.353 0.678 1.478 sum 0.621 -15.495 -23.126 27.844 Atomic orbital electron populations 1.22327 0.95548 1.02620 1.03004 1.21691 0.94785 0.82258 1.03563 1.47984 1.65646 1.14108 1.06547 1.21472 0.98011 0.97425 0.83642 1.22320 0.96069 0.97066 0.92863 1.59938 1.30532 1.33873 1.05519 1.21645 0.91613 0.98219 0.96426 1.19794 0.86553 0.84613 0.86420 1.90523 1.19904 1.64911 1.71360 1.41852 1.11577 1.45492 1.21093 1.19664 0.98029 1.27630 0.97619 0.87948 1.25263 0.94953 0.97820 0.99913 1.69602 1.02744 1.42027 1.39992 0.85907 0.77782 0.79290 0.81176 1.19867 1.20988 1.19925 1.20367 0.77128 0.86926 0.84922 1.90772 1.46293 1.15586 1.87112 1.21523 0.99288 0.99124 0.93598 0.87974 1.21764 1.04035 0.97231 0.92811 1.21460 0.90580 0.91376 0.98041 1.45500 1.31356 1.45165 1.15263 1.19958 0.79942 0.80887 0.88000 1.90792 1.42846 1.32901 1.76761 1.21612 0.98590 1.02818 0.93398 0.91597 0.92377 0.91241 0.90404 0.89623 0.88664 0.90386 0.95515 0.90760 0.83281 0.93963 0.89599 0.77465 0.91831 0.88917 0.89548 0.91214 0.89809 0.76359 0.87273 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 10.01 37.15 0.37 -0.53 16 2 C 0.10 0.53 5.79 -4.04 -0.02 0.51 16 3 N -0.61 -5.12 2.48 -173.68 -0.43 -5.55 16 4 C 0.12 1.24 5.67 -4.05 -0.02 1.22 16 5 C 0.05 0.59 6.01 -3.83 -0.02 0.57 16 6 N -0.67 -10.83 6.13 -115.07 -0.70 -11.54 16 7 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.53 7.82 -10.99 -0.09 10.45 16 9 O -0.58 -15.98 15.78 5.54 0.09 -15.89 16 10 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 11 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 12 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 15 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 C 0.52 4.94 6.72 -10.99 -0.07 4.86 16 20 O -0.52 -7.20 15.90 5.55 0.09 -7.11 16 21 C -0.11 -0.69 1.74 -91.56 -0.16 -0.85 16 22 H 0.10 0.45 5.61 -51.93 -0.29 0.15 16 23 C -0.12 -0.65 4.73 -26.60 -0.13 -0.78 16 24 C 0.11 0.36 7.17 -4.49 -0.03 0.33 16 25 N -0.72 -3.85 5.45 -61.39 -0.33 -4.19 16 26 C 0.53 4.30 7.71 -11.87 -0.09 4.21 16 27 O -0.55 -6.90 17.78 5.56 0.10 -6.80 16 28 C -0.12 -0.83 5.24 -28.10 -0.15 -0.97 16 29 H 0.07 0.44 6.62 -51.93 -0.34 0.09 16 30 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 31 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.08 0.30 5.58 -51.93 -0.29 0.01 16 33 H 0.09 0.39 7.84 -51.92 -0.41 -0.01 16 34 H 0.10 1.24 7.50 -51.92 -0.39 0.85 16 35 H 0.08 0.69 7.86 -51.93 -0.41 0.29 16 36 H 0.03 0.30 6.62 -51.93 -0.34 -0.05 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.35 5.61 8.43 -39.29 -0.33 5.28 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 45 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 47 H 0.40 1.78 8.80 -40.82 -0.36 1.42 16 48 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 49 H 0.11 0.62 7.11 -51.93 -0.37 0.25 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -36.49 398.35 -7.77 -44.27 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.54 Total: 11.18 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -0.68 Total: 11.87 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.80 Total: -59.64 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: 0.27 Total: -29.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.49 -7.77 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699175887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.299 kcal (2) G-P(sol) polarization free energy of solvation -36.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds