Wall clock time and date at job start Sat Apr 11 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47018 * 110.99991 * 2 1 4 4 C 1.53096 * 109.25927 * 182.39170 * 3 2 1 5 5 O 1.43018 * 109.26134 * 303.15348 * 4 3 2 6 6 C 1.43013 * 113.73626 * 58.66875 * 5 4 3 7 7 H 1.08994 * 109.50691 * 61.30896 * 6 5 4 8 8 C 1.50703 * 109.50595 * 181.39599 * 6 5 4 9 9 O 1.21280 * 119.99663 * 5.00123 * 8 6 5 10 10 N 1.34780 * 119.99968 * 184.99998 * 8 6 5 11 11 C 1.46499 * 119.99717 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46890 * 174.96868 * 11 10 8 13 13 N 1.46898 * 115.55322 * 83.90604 * 12 11 10 14 14 C 1.46900 * 111.00153 * 65.25967 * 13 12 11 15 15 C 1.50698 * 109.47150 * 174.48496 * 14 13 12 16 16 O 1.21293 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00321 * 179.73099 * 15 14 13 18 18 C 1.37096 * 120.00172 * 180.27971 * 17 15 14 19 19 H 1.07997 * 119.99891 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99746 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00074 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47291 * 60.00125 * 22 20 18 24 24 H 1.48494 * 109.47321 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47226 * 300.00149 * 22 20 18 26 26 C 1.53000 * 117.49509 * 229.57745 * 12 11 10 27 27 C 1.52997 * 117.49480 * 298.22973 * 12 11 10 28 28 C 1.47013 * 111.00280 * 123.63386 * 2 1 3 29 29 H 1.08994 * 109.47222 * 56.04590 * 1 2 3 30 30 H 1.08999 * 109.46808 * 176.04568 * 1 2 3 31 31 H 1.09004 * 109.47400 * 296.04008 * 1 2 3 32 32 H 1.09004 * 109.50016 * 62.45977 * 3 2 1 33 33 H 1.09001 * 109.54200 * 302.35489 * 3 2 1 34 34 H 1.09002 * 109.50443 * 183.21904 * 4 3 2 35 35 H 1.09000 * 109.50750 * 63.09146 * 4 3 2 36 36 H 0.96998 * 120.00020 * 359.97438 * 10 8 6 37 37 H 1.08994 * 109.47655 * 54.96006 * 11 10 8 38 38 H 1.09007 * 109.47033 * 294.95905 * 11 10 8 39 39 H 1.00909 * 110.99498 * 301.30795 * 13 12 11 40 40 H 1.09005 * 109.46525 * 54.49196 * 14 13 12 41 41 H 1.08994 * 109.47388 * 294.49066 * 14 13 12 42 42 H 0.97004 * 119.99744 * 0.27053 * 17 15 14 43 43 H 0.97002 * 119.99714 * 179.97438 * 21 20 18 44 44 H 1.09000 * 117.49533 * 215.00110 * 26 12 11 45 45 H 1.08995 * 117.49856 * 0.02562 * 26 12 11 46 46 H 1.09003 * 117.50388 * 359.97438 * 27 12 11 47 47 H 1.09000 * 117.49709 * 144.99927 * 27 12 11 48 48 H 1.09000 * 109.50457 * 57.67483 * 28 2 1 49 49 H 1.08998 * 109.50990 * 297.54636 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0175 0.5574 1.0403 6 6 3.5250 -0.7849 1.0709 7 1 3.8392 -1.3085 0.1680 8 6 4.0742 -1.4950 2.2813 9 8 4.7403 -0.8858 3.0913 10 7 3.8252 -2.8069 2.4637 11 6 4.3586 -3.4970 3.6407 12 6 3.8307 -4.9327 3.6730 13 7 4.5804 -5.9019 2.8627 14 6 5.9424 -6.0812 3.3830 15 6 6.6339 -7.1769 2.6134 16 8 6.0498 -7.7516 1.7191 17 7 7.9035 -7.5144 2.9148 18 6 8.5345 -8.5073 2.2109 19 1 8.0141 -9.0193 1.4151 20 6 9.8435 -8.8547 2.5214 21 7 10.4768 -8.2312 3.4894 22 14 10.7030 -10.2080 1.5627 23 1 10.7616 -9.8365 0.1260 24 1 12.0816 -10.3857 2.0851 25 1 9.9489 -11.4782 1.7151 26 6 3.2189 -5.4311 4.9838 27 6 2.3172 -5.1264 3.7851 28 6 1.9959 -0.7602 1.1427 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 -0.3634 0.4512 0.9234 32 1 1.6827 1.8825 0.9111 33 1 1.6133 1.9099 -0.8677 34 1 3.9221 2.3399 -0.0029 35 1 3.8385 0.8645 -0.9965 36 1 3.2921 -3.2940 1.8161 37 1 4.0430 -2.9734 4.5431 38 1 5.4475 -3.5114 3.5910 39 1 4.5975 -5.6254 1.8924 40 1 5.8956 -6.3520 4.4378 41 1 6.4996 -5.1512 3.2710 42 1 8.3708 -7.0546 3.6298 43 1 11.3906 -8.4741 3.7063 44 1 3.3728 -6.4781 5.2449 45 1 3.1922 -4.7360 5.8230 46 1 1.6976 -4.2311 3.8363 47 1 1.8777 -5.9729 3.2575 48 1 1.6134 -1.7803 1.1086 49 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699649684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:39 Heat of formation + Delta-G solvation = -72.536771 kcal Electronic energy + Delta-G solvation = -29746.538813 eV Core-core repulsion = 25516.890781 eV Total energy + Delta-G solvation = -4229.648033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70757 -39.41062 -38.49328 -37.69335 -36.12712 -34.33797 -34.00065 -32.78474 -31.98975 -31.18161 -29.37795 -27.42637 -26.53686 -25.00142 -24.57574 -24.09882 -22.54698 -21.27310 -20.56569 -19.77679 -19.20163 -17.88890 -17.86942 -17.10345 -16.62907 -16.28026 -16.02871 -15.74123 -15.46301 -15.36483 -15.16813 -15.02128 -14.51064 -14.34406 -14.22056 -14.04198 -13.90409 -13.44961 -13.37362 -12.90719 -12.84534 -12.50423 -12.43070 -12.24406 -12.18583 -11.88713 -11.58971 -11.54496 -11.43336 -11.21583 -11.01505 -10.65207 -10.43707 -10.30496 -10.19980 -10.14189 -9.78538 -9.49338 -9.29619 -8.98598 -8.56528 -8.14032 -7.95795 -6.40635 -3.81703 2.33109 2.48915 3.20773 3.24438 3.26594 3.30637 3.50691 3.77675 3.90691 3.98717 4.24030 4.26818 4.38406 4.42746 4.43972 4.57102 4.68404 4.80377 4.84078 4.89438 4.95901 5.01399 5.03641 5.18051 5.21572 5.25257 5.28993 5.36697 5.42198 5.44071 5.49424 5.57288 5.59519 5.83705 5.91748 5.97093 6.10219 6.16688 6.26723 6.30777 6.34611 6.62661 7.12515 7.23581 7.53140 7.55749 7.97400 8.06414 8.61784 9.18387 9.54863 10.06151 10.76938 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.002132 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.372232 B =13131.684483 C =13901.540333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.078 3.922 7 H 0.095 0.905 8 C 0.520 3.480 9 O -0.516 6.516 10 N -0.721 5.721 11 C 0.128 3.872 12 C 0.013 3.987 13 N -0.625 5.625 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.147 4.147 27 C -0.154 4.154 28 C 0.030 3.970 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.403 0.597 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.351 0.649 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.027 18.313 -2.749 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.273 6.273 6 C 0.016 3.984 7 H 0.113 0.887 8 C 0.304 3.696 9 O -0.390 6.390 10 N -0.375 5.375 11 C 0.003 3.997 12 C -0.080 4.080 13 N -0.256 5.256 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.185 4.185 27 C -0.191 4.191 28 C -0.099 4.099 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.171 0.829 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.125 0.875 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.123 0.877 48 H 0.112 0.888 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.661 17.632 -2.650 26.542 hybrid contribution 0.554 0.528 -0.062 0.768 sum -19.106 18.160 -2.713 26.499 Atomic orbital electron populations 1.22404 0.86221 1.02869 1.00888 1.62208 1.08707 1.13746 1.41810 1.22874 0.96714 0.89752 1.02113 1.22773 0.92045 0.96736 0.89994 1.88137 1.69267 1.21575 1.48322 1.21934 0.92980 0.85886 0.97620 0.88693 1.20039 0.80781 0.82056 0.86728 1.90748 1.37806 1.65898 1.44577 1.45885 1.55498 1.09316 1.26775 1.21467 0.99333 0.90742 0.88165 1.21685 0.95323 0.89490 1.01476 1.59961 1.14688 1.45038 1.05872 1.21677 0.88719 0.97676 1.00133 1.19758 0.83041 0.87189 0.87360 1.90521 1.65645 1.56685 1.33924 1.41855 1.11017 1.33929 1.33141 1.19642 0.95568 1.12489 1.15262 0.87982 1.25271 0.96730 0.98917 0.97040 1.69607 1.13007 1.41974 1.29628 0.85913 0.77976 0.80763 0.79528 1.19914 1.20982 1.19890 1.23079 1.01912 1.02971 0.90580 1.23056 0.90777 1.03345 1.01949 1.22679 0.93940 1.00306 0.92955 0.90874 0.90764 0.95301 0.93615 0.89174 0.87687 0.91777 0.76274 0.90559 0.90690 0.82927 0.89364 0.93614 0.77439 0.91795 0.87545 0.88584 0.88846 0.87651 0.88830 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.61 60.06 0.58 0.71 16 2 N -0.54 -3.92 4.99 -242.60 -1.21 -5.13 16 3 C 0.01 0.09 5.66 -3.71 -0.02 0.07 16 4 C 0.06 0.48 7.01 37.21 0.26 0.74 16 5 O -0.36 -4.22 10.01 -55.06 -0.55 -4.77 16 6 C 0.08 0.78 3.22 -27.83 -0.09 0.69 16 7 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.52 6.42 7.18 -10.98 -0.08 6.34 16 9 O -0.52 -8.74 16.50 -14.27 -0.24 -8.97 16 10 N -0.72 -7.22 5.43 -60.29 -0.33 -7.55 16 11 C 0.13 1.46 5.71 -4.04 -0.02 1.43 16 12 C 0.01 0.15 1.72 -131.60 -0.23 -0.08 16 13 N -0.62 -9.40 6.14 -101.22 -0.62 -10.02 16 14 C 0.05 0.87 5.90 -4.98 -0.03 0.84 16 15 C 0.44 10.35 7.83 -10.99 -0.09 10.27 16 16 O -0.58 -15.69 15.90 5.55 0.09 -15.60 16 17 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 22 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.15 -1.51 10.05 -26.70 -0.27 -1.77 16 27 C -0.15 -1.41 10.03 -26.70 -0.27 -1.68 16 28 C 0.03 0.23 4.90 -3.71 -0.02 0.22 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 3.13 8.31 -40.82 -0.34 2.79 16 37 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 38 H 0.07 1.00 6.59 -51.93 -0.34 0.66 16 39 H 0.35 5.37 8.72 -39.29 -0.34 5.02 16 40 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 41 H 0.05 0.75 6.82 -51.93 -0.35 0.39 16 42 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.10 0.84 8.06 -51.93 -0.42 0.42 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.09 0.56 8.02 -51.93 -0.42 0.15 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -34.90 405.76 -9.56 -44.46 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.95 Total: 13.95 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -0.51 Total: 9.74 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.49 Total: -61.07 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.70 Total: -29.34 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.90 -9.56 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699649684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.081 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds