Wall clock time and date at job start Sat Apr 11 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47018 * 110.99991 * 2 1 4 4 C 1.53096 * 109.25927 * 182.39170 * 3 2 1 5 5 O 1.43018 * 109.26134 * 303.15348 * 4 3 2 6 6 C 1.43013 * 113.73626 * 58.66875 * 5 4 3 7 7 H 1.08994 * 109.50691 * 61.30896 * 6 5 4 8 8 C 1.50703 * 109.50595 * 181.39599 * 6 5 4 9 9 O 1.21280 * 119.99663 * 5.00123 * 8 6 5 10 10 N 1.34780 * 119.99968 * 184.99998 * 8 6 5 11 11 C 1.46499 * 119.99717 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46890 * 174.96868 * 11 10 8 13 13 N 1.46898 * 115.55322 * 83.90604 * 12 11 10 14 14 C 1.46900 * 111.00153 * 65.25967 * 13 12 11 15 15 C 1.50698 * 109.47150 * 174.48496 * 14 13 12 16 16 O 1.21293 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00321 * 179.73099 * 15 14 13 18 18 C 1.37096 * 120.00172 * 180.27971 * 17 15 14 19 19 H 1.07997 * 119.99891 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99746 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00074 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47291 * 60.00125 * 22 20 18 24 24 H 1.48494 * 109.47321 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47226 * 300.00149 * 22 20 18 26 26 C 1.53000 * 117.49509 * 229.57745 * 12 11 10 27 27 C 1.52997 * 117.49480 * 298.22973 * 12 11 10 28 28 C 1.47013 * 111.00280 * 123.63386 * 2 1 3 29 29 H 1.08994 * 109.47222 * 56.04590 * 1 2 3 30 30 H 1.08999 * 109.46808 * 176.04568 * 1 2 3 31 31 H 1.09004 * 109.47400 * 296.04008 * 1 2 3 32 32 H 1.09004 * 109.50016 * 62.45977 * 3 2 1 33 33 H 1.09001 * 109.54200 * 302.35489 * 3 2 1 34 34 H 1.09002 * 109.50443 * 183.21904 * 4 3 2 35 35 H 1.09000 * 109.50750 * 63.09146 * 4 3 2 36 36 H 0.96998 * 120.00020 * 359.97438 * 10 8 6 37 37 H 1.08994 * 109.47655 * 54.96006 * 11 10 8 38 38 H 1.09007 * 109.47033 * 294.95905 * 11 10 8 39 39 H 1.00909 * 110.99498 * 301.30795 * 13 12 11 40 40 H 1.09005 * 109.46525 * 54.49196 * 14 13 12 41 41 H 1.08994 * 109.47388 * 294.49066 * 14 13 12 42 42 H 0.97004 * 119.99744 * 0.27053 * 17 15 14 43 43 H 0.97002 * 119.99714 * 179.97438 * 21 20 18 44 44 H 1.09000 * 117.49533 * 215.00110 * 26 12 11 45 45 H 1.08995 * 117.49856 * 0.02562 * 26 12 11 46 46 H 1.09003 * 117.50388 * 359.97438 * 27 12 11 47 47 H 1.09000 * 117.49709 * 144.99927 * 27 12 11 48 48 H 1.09000 * 109.50457 * 57.67483 * 28 2 1 49 49 H 1.08998 * 109.50990 * 297.54636 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0175 0.5574 1.0403 6 6 3.5250 -0.7849 1.0709 7 1 3.8392 -1.3085 0.1680 8 6 4.0742 -1.4950 2.2813 9 8 4.7403 -0.8858 3.0913 10 7 3.8252 -2.8069 2.4637 11 6 4.3586 -3.4970 3.6407 12 6 3.8307 -4.9327 3.6730 13 7 4.5804 -5.9019 2.8627 14 6 5.9424 -6.0812 3.3830 15 6 6.6339 -7.1769 2.6134 16 8 6.0498 -7.7516 1.7191 17 7 7.9035 -7.5144 2.9148 18 6 8.5345 -8.5073 2.2109 19 1 8.0141 -9.0193 1.4151 20 6 9.8435 -8.8547 2.5214 21 7 10.4768 -8.2312 3.4894 22 14 10.7030 -10.2080 1.5627 23 1 10.7616 -9.8365 0.1260 24 1 12.0816 -10.3857 2.0851 25 1 9.9489 -11.4782 1.7151 26 6 3.2189 -5.4311 4.9838 27 6 2.3172 -5.1264 3.7851 28 6 1.9959 -0.7602 1.1427 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 -0.3634 0.4512 0.9234 32 1 1.6827 1.8825 0.9111 33 1 1.6133 1.9099 -0.8677 34 1 3.9221 2.3399 -0.0029 35 1 3.8385 0.8645 -0.9965 36 1 3.2921 -3.2940 1.8161 37 1 4.0430 -2.9734 4.5431 38 1 5.4475 -3.5114 3.5910 39 1 4.5975 -5.6254 1.8924 40 1 5.8956 -6.3520 4.4378 41 1 6.4996 -5.1512 3.2710 42 1 8.3708 -7.0546 3.6298 43 1 11.3906 -8.4741 3.7063 44 1 3.3728 -6.4781 5.2449 45 1 3.1922 -4.7360 5.8230 46 1 1.6976 -4.2311 3.8363 47 1 1.8777 -5.9729 3.2575 48 1 1.6134 -1.7803 1.1086 49 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699649684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:38 Heat of formation + Delta-G solvation = -102.010304 kcal Electronic energy + Delta-G solvation = -29747.816881 eV Core-core repulsion = 25516.890781 eV Total energy + Delta-G solvation = -4230.926101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54251 -40.44027 -39.87222 -38.97881 -36.76669 -36.01987 -35.29406 -34.09866 -33.21510 -32.66922 -29.97171 -28.50076 -27.95065 -25.94137 -25.68235 -25.11218 -23.37817 -21.96177 -21.40151 -21.11455 -20.66424 -19.89830 -18.77459 -17.95303 -17.83751 -17.19412 -16.88868 -16.80981 -16.62227 -16.37071 -16.21567 -16.04157 -15.85967 -15.72002 -15.24903 -15.07860 -15.01228 -14.77513 -14.21387 -14.12764 -13.85247 -13.59294 -13.44666 -13.31835 -13.04365 -12.94786 -12.82417 -12.76950 -12.45683 -12.43844 -12.28335 -12.13104 -11.84393 -11.53063 -11.49135 -11.23173 -10.85245 -10.71664 -10.36031 -10.24819 -10.02565 -9.52037 -9.47805 -8.46838 -5.96029 1.38951 1.39671 1.41324 1.52576 1.66314 2.04052 2.27619 2.64087 2.69078 2.87877 3.06790 3.19987 3.44683 3.54826 3.58451 3.67062 3.86472 3.93974 3.96515 4.09570 4.12289 4.25542 4.27172 4.33616 4.46065 4.53477 4.54846 4.59211 4.60263 4.63264 4.66143 4.76279 4.81094 4.83409 4.88243 5.02006 5.09447 5.22285 5.37268 5.40051 5.77422 5.84813 5.87087 5.94866 6.06144 6.33977 6.40735 6.58711 7.07017 7.11525 7.55077 8.09806 8.70321 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.002132 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.372232 B =13131.684483 C =13901.540333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.016 3.984 4 C 0.056 3.944 5 O -0.391 6.391 6 C 0.079 3.921 7 H 0.106 0.894 8 C 0.519 3.481 9 O -0.569 6.569 10 N -0.705 5.705 11 C 0.136 3.864 12 C 0.004 3.996 13 N -0.633 5.633 14 C 0.067 3.933 15 C 0.439 3.561 16 O -0.620 6.620 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.081 0.919 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.148 4.148 27 C -0.129 4.129 28 C 0.037 3.963 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.348 0.652 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.114 0.886 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.607 18.629 -3.195 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.112 4.112 4 C -0.021 4.021 5 O -0.309 6.309 6 C 0.018 3.982 7 H 0.124 0.876 8 C 0.305 3.695 9 O -0.447 6.447 10 N -0.358 5.358 11 C 0.010 3.990 12 C -0.089 4.089 13 N -0.264 5.264 14 C -0.065 4.065 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.186 4.186 27 C -0.167 4.167 28 C -0.091 4.091 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.253 0.747 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.167 0.833 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.121 0.879 48 H 0.132 0.868 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.281 17.942 -3.101 28.007 hybrid contribution 0.980 0.461 0.065 1.085 sum -20.301 18.404 -3.036 27.568 Atomic orbital electron populations 1.22470 0.84904 1.03670 1.01354 1.62250 1.09877 1.13852 1.41215 1.22885 0.95846 0.89803 1.02682 1.22997 0.93013 0.96952 0.89100 1.88090 1.70324 1.22498 1.50005 1.21975 0.94388 0.85324 0.96531 0.87627 1.20526 0.79855 0.82370 0.86794 1.90718 1.40306 1.67108 1.46563 1.45766 1.54764 1.08693 1.26598 1.21306 0.98040 0.90891 0.88760 1.21640 0.96476 0.88480 1.02299 1.59935 1.13317 1.46918 1.06198 1.21464 0.89776 0.95604 0.99692 1.20798 0.82305 0.87466 0.86749 1.90486 1.66318 1.58211 1.35586 1.41949 1.11883 1.33964 1.33345 1.19636 0.96575 1.14080 1.16019 0.90145 1.26081 0.96800 1.00820 0.97770 1.69676 1.13406 1.42829 1.30297 0.84970 0.77226 0.77850 0.78184 1.19625 1.19594 1.19574 1.23173 1.01729 1.02699 0.90992 1.23134 0.89154 1.04139 1.00266 1.22622 0.92201 1.01539 0.92787 0.89744 0.89938 0.95386 0.94401 0.87049 0.86463 0.91253 0.74690 0.90088 0.92934 0.83287 0.87890 0.92403 0.77114 0.91310 0.88786 0.86734 0.86313 0.87926 0.86764 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.61 127.69 1.23 1.42 16 2 N -0.55 -6.83 4.99 -921.44 -4.59 -11.42 16 3 C 0.02 0.19 5.66 86.31 0.49 0.68 16 4 C 0.06 0.82 7.01 72.01 0.50 1.33 16 5 O -0.39 -9.24 10.01 -130.02 -1.30 -10.55 16 6 C 0.08 1.54 3.22 29.88 0.10 1.63 16 7 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 8 C 0.52 12.65 7.18 87.66 0.63 13.28 16 9 O -0.57 -19.66 16.50 15.93 0.26 -19.40 16 10 N -0.70 -13.26 5.43 -463.05 -2.52 -15.78 16 11 C 0.14 2.93 5.71 86.38 0.49 3.42 16 12 C 0.00 0.07 1.72 3.53 0.01 0.08 16 13 N -0.63 -18.51 6.14 -474.16 -2.91 -21.42 16 14 C 0.07 2.30 5.90 85.56 0.50 2.80 16 15 C 0.44 20.95 7.83 87.66 0.69 21.64 16 16 O -0.62 -34.00 15.90 -3.07 -0.05 -34.05 16 17 N -0.57 -29.88 5.29 -306.99 -1.62 -31.51 16 18 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 19 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 20 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 21 N -0.92 -50.53 13.05 21.66 0.28 -50.24 16 22 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C -0.15 -2.70 10.05 30.62 0.31 -2.39 16 27 C -0.13 -2.00 10.03 30.61 0.31 -1.70 16 28 C 0.04 0.52 4.90 86.32 0.42 0.95 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.03 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.42 5.63 8.31 -92.71 -0.77 4.86 16 37 H 0.08 1.72 7.91 -2.39 -0.02 1.70 16 38 H 0.05 1.40 6.59 -2.38 -0.02 1.38 16 39 H 0.35 10.43 8.72 -89.69 -0.78 9.64 16 40 H 0.10 3.26 8.08 -2.38 -0.02 3.24 16 41 H 0.06 1.87 6.82 -2.39 -0.02 1.86 16 42 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 43 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.11 1.68 8.06 -2.39 -0.02 1.66 16 46 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.11 1.07 8.02 -2.39 -0.02 1.05 16 49 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.14 405.76 -4.76 -81.91 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -1.30 Total: 42.62 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 6.96 Total: 24.51 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -11.36 Total: -130.37 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -1.09 Total: -63.99 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.14 -4.76 -81.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699649684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.103 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds