Wall clock time and date at job start Sat Apr 11 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00021 * 2 1 4 4 H 1.08998 * 109.47208 * 29.99841 * 3 2 1 5 5 C 1.50701 * 109.47493 * 150.00334 * 3 2 1 6 6 O 1.21279 * 119.99699 * 4.99668 * 5 3 2 7 7 N 1.34771 * 120.00282 * 184.99668 * 5 3 2 8 8 C 1.46496 * 120.00005 * 0.02562 * 7 5 3 9 9 C 1.46503 * 120.00056 * 179.97438 * 7 5 3 10 10 C 1.53005 * 109.46998 * 270.00146 * 9 7 5 11 11 H 1.08996 * 109.47482 * 304.99900 * 10 9 7 12 12 O 1.42905 * 109.46950 * 65.00070 * 10 9 7 13 13 C 1.53002 * 109.46637 * 184.99767 * 10 9 7 14 14 N 1.46507 * 109.46701 * 180.02562 * 13 10 9 15 15 C 1.46493 * 120.00092 * 270.00243 * 14 13 10 16 16 C 1.36939 * 119.99810 * 89.99963 * 14 13 10 17 17 H 1.07998 * 119.99879 * 337.03689 * 16 14 13 18 18 C 1.38811 * 119.99843 * 156.75070 * 16 14 13 19 19 N 1.31616 * 120.00141 * 156.45492 * 18 16 14 20 20 Si 1.86804 * 120.00059 * 336.46595 * 18 16 14 21 21 H 1.48499 * 109.47170 * 84.84104 * 20 18 16 22 22 H 1.48497 * 109.47110 * 204.84404 * 20 18 16 23 23 H 1.48501 * 109.47000 * 324.83813 * 20 18 16 24 24 C 1.50700 * 109.46958 * 270.00218 * 3 2 1 25 25 C 1.39873 * 126.03936 * 325.02307 * 24 3 2 26 26 N 1.30842 * 108.19943 * 179.97438 * 25 24 3 27 27 N 1.40083 * 108.20809 * 0.02562 * 26 25 24 28 28 C 1.46494 * 126.03607 * 180.02562 * 27 26 25 29 29 C 1.34945 * 107.92372 * 359.75839 * 27 26 25 30 30 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46953 * 299.99885 * 1 2 3 32 32 H 1.08996 * 109.47708 * 60.00001 * 1 2 3 33 33 H 1.09003 * 109.47315 * 269.99576 * 8 7 5 34 34 H 1.08998 * 109.47403 * 29.99441 * 8 7 5 35 35 H 1.09000 * 109.47753 * 149.99457 * 8 7 5 36 36 H 1.08998 * 109.46900 * 150.00511 * 9 7 5 37 37 H 1.08995 * 109.47245 * 30.00137 * 9 7 5 38 38 H 0.96705 * 114.00015 * 59.99840 * 12 10 9 39 39 H 1.08994 * 109.46928 * 60.00723 * 13 10 9 40 40 H 1.08996 * 109.47293 * 300.00249 * 13 10 9 41 41 H 1.09003 * 109.47076 * 274.45331 * 15 14 13 42 42 H 1.09003 * 109.47245 * 34.45329 * 15 14 13 43 43 H 1.09000 * 109.47564 * 154.45204 * 15 14 13 44 44 H 0.97001 * 120.00074 * 180.02562 * 19 18 16 45 45 H 1.07992 * 125.90140 * 359.95686 * 25 24 3 46 46 H 1.09003 * 109.47410 * 89.97221 * 28 27 26 47 47 H 1.09002 * 109.47107 * 209.97495 * 28 27 26 48 48 H 1.09004 * 109.47245 * 329.97184 * 28 27 26 49 49 H 1.07999 * 126.12728 * 180.24580 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3387 1.2640 0.7103 6 8 3.7897 0.2046 1.0913 7 7 4.0255 2.4040 0.9222 8 6 3.4804 3.6837 0.4625 9 6 5.3166 2.3637 1.6132 10 6 5.0942 2.5192 3.1190 11 1 4.5272 3.4301 3.3105 12 8 4.3663 1.3925 3.6119 13 6 6.4473 2.6022 3.8284 14 7 6.2344 2.7505 5.2703 15 6 6.1192 4.0865 5.8602 16 6 6.1430 1.6402 6.0667 17 1 5.8573 0.6907 5.6386 18 6 6.4234 1.7339 7.4229 19 7 5.9168 0.8554 8.2619 20 14 7.5194 3.1071 8.0575 21 1 6.7037 4.3272 8.2835 22 1 8.1480 2.6880 9.3359 23 1 8.5780 3.3976 7.0573 24 6 2.2144 1.7643 -1.4208 25 6 2.5629 0.9530 -2.5056 26 7 2.6472 1.7085 -3.5705 27 7 2.3552 3.0265 -3.1964 28 6 2.3367 4.1908 -4.0853 29 6 2.0883 3.0333 -1.8736 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.8232 3.8809 -0.5532 34 1 2.3913 3.6408 0.4765 35 1 3.8210 4.4818 1.1222 36 1 5.9469 3.1768 1.2532 37 1 5.8053 1.4099 1.4148 38 1 4.8126 0.5455 3.4753 39 1 7.0025 3.4615 3.4525 40 1 7.0144 1.6912 3.6370 41 1 7.1141 4.4728 6.0817 42 1 5.6192 4.7523 5.1568 43 1 5.5387 4.0284 6.7809 44 1 6.1124 0.9211 9.2097 45 1 2.7332 -0.1128 -2.4703 46 1 1.3368 4.3142 -4.5016 47 1 2.6081 5.0830 -3.5212 48 1 3.0513 4.0413 -4.8948 49 1 1.8234 3.8970 -1.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700962921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:58 Heat of formation + Delta-G solvation = 6.439945 kcal Electronic energy + Delta-G solvation = -31095.680477 eV Core-core repulsion = 26869.457132 eV Total energy + Delta-G solvation = -4226.223345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.75337 -39.85149 -37.91106 -36.97821 -35.42250 -34.60187 -33.66175 -31.82717 -31.46473 -29.81789 -28.69110 -27.27356 -26.77109 -26.39633 -25.77326 -24.61084 -22.20291 -21.45447 -20.98517 -20.45260 -19.26961 -17.91510 -16.96786 -16.86404 -16.67250 -15.99443 -15.85621 -15.66968 -15.39859 -15.18723 -14.87225 -14.64906 -14.33720 -14.22027 -13.89825 -13.57578 -13.45539 -13.29391 -13.11102 -13.04186 -12.80429 -12.64392 -12.59254 -12.39749 -12.11340 -12.01958 -11.59722 -11.43365 -11.16002 -10.98720 -10.55871 -10.51962 -10.21128 -10.15107 -10.00550 -9.77874 -9.66818 -9.58173 -9.40770 -8.68925 -8.62614 -8.30581 -6.88395 -5.82907 -3.14886 1.47776 2.12999 2.39417 2.75951 2.84003 3.40264 3.55158 3.57781 3.79636 4.14675 4.31177 4.58419 4.64078 4.67051 4.71549 4.77063 4.87928 4.90080 4.95265 5.02307 5.09024 5.17227 5.23764 5.26232 5.37345 5.43632 5.45280 5.47412 5.54553 5.58108 5.62030 5.74004 5.91119 6.00270 6.25296 6.29181 6.31116 6.49001 6.56463 6.58563 6.71240 6.76855 6.91527 7.34927 7.43177 8.03366 8.34067 8.44848 8.53967 9.05911 9.84472 10.14281 11.33281 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.002648 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.040388 B =10570.731116 C =11442.517391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.350 6.350 3 C 0.157 3.843 4 H 0.087 0.913 5 C 0.527 3.473 6 O -0.507 6.507 7 N -0.605 5.605 8 C 0.077 3.923 9 C 0.084 3.916 10 C 0.074 3.926 11 H 0.083 0.917 12 O -0.535 6.535 13 C 0.123 3.877 14 N -0.602 5.602 15 C 0.105 3.895 16 C -0.248 4.248 17 H 0.089 0.911 18 C 0.019 3.981 19 N -0.906 5.906 20 Si 0.884 3.116 21 H -0.289 1.289 22 H -0.307 1.307 23 H -0.281 1.281 24 C -0.263 4.263 25 C 0.082 3.918 26 N -0.298 5.298 27 N -0.376 5.376 28 C 0.101 3.899 29 C 0.066 3.934 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.372 0.628 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.006 0.994 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.260 0.740 45 H 0.187 0.813 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 10.018 -25.786 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.094 3.906 4 H 0.105 0.895 5 C 0.313 3.687 6 O -0.380 6.380 7 N -0.340 5.340 8 C -0.066 4.066 9 C -0.040 4.040 10 C 0.010 3.990 11 H 0.101 0.899 12 O -0.340 6.340 13 C -0.005 4.005 14 N -0.324 5.324 15 C -0.040 4.040 16 C -0.376 4.376 17 H 0.107 0.893 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.715 3.285 21 H -0.217 1.217 22 H -0.235 1.235 23 H -0.207 1.207 24 C -0.276 4.276 25 C -0.104 4.104 26 N -0.119 5.119 27 N -0.157 5.157 28 C -0.040 4.040 29 C -0.081 4.081 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.219 0.781 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.204 0.796 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.330 9.830 -26.599 30.181 hybrid contribution 0.610 0.934 1.146 1.600 sum -9.720 10.764 -25.453 29.295 Atomic orbital electron populations 1.22855 0.80671 1.03174 0.99875 1.88034 1.19605 1.24492 1.94567 1.19903 0.93747 0.86612 0.90319 0.89549 1.20023 0.85822 0.83842 0.78982 1.90702 1.68419 1.29344 1.49511 1.47529 1.21615 1.06448 1.58417 1.22081 0.98838 0.86189 0.99505 1.22372 0.83931 1.03531 0.94120 1.22985 0.96015 0.90728 0.89261 0.89895 1.86582 1.47934 1.16220 1.83219 1.21401 0.93772 1.00092 0.85251 1.43990 1.83926 1.02291 1.02206 1.21373 0.97638 0.86734 0.98264 1.18911 1.39462 0.89422 0.89777 0.89312 1.25187 0.99800 0.96981 0.95970 1.69902 1.44335 1.38251 1.02484 0.87054 0.82436 0.82032 0.76994 1.21654 1.23520 1.20694 1.20243 1.17246 0.93275 0.96826 1.23755 0.97142 1.00429 0.89102 1.77445 1.23821 0.87218 1.23409 1.48526 1.53355 1.07320 1.06518 1.21881 1.03763 0.84060 0.94325 1.22470 1.01074 0.99022 0.85548 0.89141 0.93760 0.94103 0.92781 0.91556 0.90897 0.90308 0.89588 0.78127 0.93804 0.92210 0.97607 0.95351 0.92078 0.92988 0.79647 0.90666 0.89352 0.89172 0.80515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.35 -4.64 9.60 -55.09 -0.53 -5.17 16 3 C 0.16 1.84 2.21 -29.03 -0.06 1.78 16 4 H 0.09 0.83 6.77 -51.93 -0.35 0.48 16 5 C 0.53 7.84 6.71 -10.99 -0.07 7.76 16 6 O -0.51 -9.67 15.07 -19.86 -0.30 -9.97 16 7 N -0.61 -7.54 2.86 -181.57 -0.52 -8.06 16 8 C 0.08 0.61 8.42 59.84 0.50 1.12 16 9 C 0.08 1.12 5.11 -4.04 -0.02 1.10 16 10 C 0.07 1.24 3.48 -26.73 -0.09 1.15 16 11 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 12 O -0.54 -11.17 11.22 -42.95 -0.48 -11.65 16 13 C 0.12 2.31 5.41 -4.04 -0.02 2.29 16 14 N -0.60 -14.43 2.68 -181.12 -0.48 -14.91 16 15 C 0.11 2.34 8.33 59.84 0.50 2.84 16 16 C -0.25 -7.06 9.47 -15.06 -0.14 -7.20 16 17 H 0.09 2.71 7.73 -52.49 -0.41 2.30 16 18 C 0.02 0.56 5.17 -17.43 -0.09 0.47 16 19 N -0.91 -28.73 13.97 55.49 0.78 -27.95 16 20 Si 0.88 23.04 24.04 -169.99 -4.09 18.96 16 21 H -0.29 -7.22 6.37 56.52 0.36 -6.86 16 22 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 23 H -0.28 -7.23 6.90 56.52 0.39 -6.84 16 24 C -0.26 -2.66 4.66 -105.05 -0.49 -3.15 16 25 C 0.08 0.93 11.63 -17.36 -0.20 0.73 16 26 N -0.30 -3.35 12.58 30.62 0.39 -2.97 16 27 N -0.38 -3.05 4.01 -68.16 -0.27 -3.32 16 28 C 0.10 0.38 11.47 59.84 0.69 1.07 16 29 C 0.07 0.49 8.58 -17.22 -0.15 0.34 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.36 6.59 -51.93 -0.34 0.02 16 34 H 0.07 0.41 4.86 -51.93 -0.25 0.16 16 35 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.09 1.27 7.42 -51.93 -0.39 0.89 16 38 H 0.37 7.63 8.75 45.56 0.40 8.02 16 39 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 41 H 0.01 0.14 5.78 -51.93 -0.30 -0.16 16 42 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 43 H 0.06 1.49 5.76 -51.93 -0.30 1.19 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 45 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 46 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 47 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 48 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.18 0.68 6.29 -52.49 -0.33 0.35 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -39.30 391.48 -5.11 -44.41 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.93 Total: 3.08 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 1.44 Total: 11.66 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.12 Total: -57.21 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.31 Total: -26.79 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.09 Total: 18.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.30 -5.11 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700962921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.847 kcal (2) G-P(sol) polarization free energy of solvation -39.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds