Wall clock time and date at job start Sat Apr 11 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00021 * 2 1 4 4 H 1.08998 * 109.47208 * 29.99841 * 3 2 1 5 5 C 1.50701 * 109.47493 * 150.00334 * 3 2 1 6 6 O 1.21279 * 119.99699 * 4.99668 * 5 3 2 7 7 N 1.34771 * 120.00282 * 184.99668 * 5 3 2 8 8 C 1.46496 * 120.00005 * 0.02562 * 7 5 3 9 9 C 1.46503 * 120.00056 * 179.97438 * 7 5 3 10 10 C 1.53005 * 109.46998 * 270.00146 * 9 7 5 11 11 H 1.08996 * 109.47482 * 304.99900 * 10 9 7 12 12 O 1.42905 * 109.46950 * 65.00070 * 10 9 7 13 13 C 1.53002 * 109.46637 * 184.99767 * 10 9 7 14 14 N 1.46507 * 109.46701 * 180.02562 * 13 10 9 15 15 C 1.46493 * 120.00092 * 270.00243 * 14 13 10 16 16 C 1.36939 * 119.99810 * 89.99963 * 14 13 10 17 17 H 1.07998 * 119.99879 * 337.03689 * 16 14 13 18 18 C 1.38811 * 119.99843 * 156.75070 * 16 14 13 19 19 N 1.31616 * 120.00141 * 156.45492 * 18 16 14 20 20 Si 1.86804 * 120.00059 * 336.46595 * 18 16 14 21 21 H 1.48499 * 109.47170 * 84.84104 * 20 18 16 22 22 H 1.48497 * 109.47110 * 204.84404 * 20 18 16 23 23 H 1.48501 * 109.47000 * 324.83813 * 20 18 16 24 24 C 1.50700 * 109.46958 * 270.00218 * 3 2 1 25 25 C 1.39873 * 126.03936 * 325.02307 * 24 3 2 26 26 N 1.30842 * 108.19943 * 179.97438 * 25 24 3 27 27 N 1.40083 * 108.20809 * 0.02562 * 26 25 24 28 28 C 1.46494 * 126.03607 * 180.02562 * 27 26 25 29 29 C 1.34945 * 107.92372 * 359.75839 * 27 26 25 30 30 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46953 * 299.99885 * 1 2 3 32 32 H 1.08996 * 109.47708 * 60.00001 * 1 2 3 33 33 H 1.09003 * 109.47315 * 269.99576 * 8 7 5 34 34 H 1.08998 * 109.47403 * 29.99441 * 8 7 5 35 35 H 1.09000 * 109.47753 * 149.99457 * 8 7 5 36 36 H 1.08998 * 109.46900 * 150.00511 * 9 7 5 37 37 H 1.08995 * 109.47245 * 30.00137 * 9 7 5 38 38 H 0.96705 * 114.00015 * 59.99840 * 12 10 9 39 39 H 1.08994 * 109.46928 * 60.00723 * 13 10 9 40 40 H 1.08996 * 109.47293 * 300.00249 * 13 10 9 41 41 H 1.09003 * 109.47076 * 274.45331 * 15 14 13 42 42 H 1.09003 * 109.47245 * 34.45329 * 15 14 13 43 43 H 1.09000 * 109.47564 * 154.45204 * 15 14 13 44 44 H 0.97001 * 120.00074 * 180.02562 * 19 18 16 45 45 H 1.07992 * 125.90140 * 359.95686 * 25 24 3 46 46 H 1.09003 * 109.47410 * 89.97221 * 28 27 26 47 47 H 1.09002 * 109.47107 * 209.97495 * 28 27 26 48 48 H 1.09004 * 109.47245 * 329.97184 * 28 27 26 49 49 H 1.07999 * 126.12728 * 180.24580 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3387 1.2640 0.7103 6 8 3.7897 0.2046 1.0913 7 7 4.0255 2.4040 0.9222 8 6 3.4804 3.6837 0.4625 9 6 5.3166 2.3637 1.6132 10 6 5.0942 2.5192 3.1190 11 1 4.5272 3.4301 3.3105 12 8 4.3663 1.3925 3.6119 13 6 6.4473 2.6022 3.8284 14 7 6.2344 2.7505 5.2703 15 6 6.1192 4.0865 5.8602 16 6 6.1430 1.6402 6.0667 17 1 5.8573 0.6907 5.6386 18 6 6.4234 1.7339 7.4229 19 7 5.9168 0.8554 8.2619 20 14 7.5194 3.1071 8.0575 21 1 6.7037 4.3272 8.2835 22 1 8.1480 2.6880 9.3359 23 1 8.5780 3.3976 7.0573 24 6 2.2144 1.7643 -1.4208 25 6 2.5629 0.9530 -2.5056 26 7 2.6472 1.7085 -3.5705 27 7 2.3552 3.0265 -3.1964 28 6 2.3367 4.1908 -4.0853 29 6 2.0883 3.0333 -1.8736 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.8232 3.8809 -0.5532 34 1 2.3913 3.6408 0.4765 35 1 3.8210 4.4818 1.1222 36 1 5.9469 3.1768 1.2532 37 1 5.8053 1.4099 1.4148 38 1 4.8126 0.5455 3.4753 39 1 7.0025 3.4615 3.4525 40 1 7.0144 1.6912 3.6370 41 1 7.1141 4.4728 6.0817 42 1 5.6192 4.7523 5.1568 43 1 5.5387 4.0284 6.7809 44 1 6.1124 0.9211 9.2097 45 1 2.7332 -0.1128 -2.4703 46 1 1.3368 4.3142 -4.5016 47 1 2.6081 5.0830 -3.5212 48 1 3.0513 4.0413 -4.8948 49 1 1.8234 3.8970 -1.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700962921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:57 Heat of formation + Delta-G solvation = -25.493666 kcal Electronic energy + Delta-G solvation = -31097.065222 eV Core-core repulsion = 26869.457132 eV Total energy + Delta-G solvation = -4227.608090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.45207 -40.86792 -39.08354 -38.25126 -36.81666 -36.07763 -34.23558 -33.64552 -32.64286 -31.12924 -29.39920 -28.39632 -27.79200 -27.36767 -27.14588 -25.72210 -23.68276 -22.13739 -22.07664 -21.75472 -20.23199 -18.90080 -18.63320 -17.85204 -17.77467 -17.23793 -17.05189 -16.86993 -16.31517 -16.19881 -15.96761 -15.86237 -15.67995 -15.28916 -15.06436 -14.99307 -14.44917 -14.18284 -14.10317 -14.06399 -13.93746 -13.78126 -13.58505 -13.44775 -13.24165 -13.11649 -12.84885 -12.62825 -12.30014 -12.24271 -12.13145 -12.01120 -11.94458 -11.69060 -11.49096 -11.17561 -11.06195 -10.67574 -10.56069 -10.37893 -9.54517 -9.40291 -8.81637 -8.08847 -5.36612 0.86972 1.33817 1.43951 1.53146 1.53731 1.65084 1.79422 1.91852 2.48073 2.98082 3.11109 3.40869 3.57592 3.64771 3.78095 3.89679 4.00752 4.06186 4.23515 4.26478 4.30682 4.33763 4.46834 4.49629 4.53746 4.54388 4.58405 4.58958 4.65364 4.72306 4.75939 4.78590 4.82337 4.84918 4.88314 4.93512 4.95948 5.04289 5.28594 5.52834 5.56923 5.92984 6.05355 6.13211 6.21281 6.48144 6.66585 6.89945 7.04026 7.30806 7.71764 8.02792 9.11776 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.002648 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.040388 B =10570.731116 C =11442.517391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.387 6.387 3 C 0.164 3.836 4 H 0.111 0.889 5 C 0.514 3.486 6 O -0.566 6.566 7 N -0.603 5.603 8 C 0.066 3.934 9 C 0.093 3.907 10 C 0.080 3.920 11 H 0.091 0.909 12 O -0.563 6.563 13 C 0.118 3.882 14 N -0.617 5.617 15 C 0.101 3.899 16 C -0.230 4.230 17 H 0.050 0.950 18 C -0.049 4.049 19 N -0.962 5.962 20 Si 0.954 3.046 21 H -0.268 1.268 22 H -0.318 1.318 23 H -0.270 1.270 24 C -0.281 4.281 25 C 0.062 3.938 26 N -0.331 5.331 27 N -0.371 5.371 28 C 0.090 3.910 29 C 0.090 3.910 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.366 0.634 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.015 0.985 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.258 0.742 45 H 0.171 0.829 46 H 0.089 0.911 47 H 0.123 0.877 48 H 0.087 0.913 49 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 14.984 -27.786 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.304 6.304 3 C 0.102 3.898 4 H 0.128 0.872 5 C 0.302 3.698 6 O -0.444 6.444 7 N -0.336 5.336 8 C -0.075 4.075 9 C -0.031 4.031 10 C 0.017 3.983 11 H 0.109 0.891 12 O -0.368 6.368 13 C -0.008 4.008 14 N -0.341 5.341 15 C -0.043 4.043 16 C -0.360 4.360 17 H 0.068 0.932 18 C -0.242 4.242 19 N -0.610 5.610 20 Si 0.783 3.217 21 H -0.194 1.194 22 H -0.248 1.248 23 H -0.195 1.195 24 C -0.294 4.294 25 C -0.123 4.123 26 N -0.153 5.153 27 N -0.152 5.152 28 C -0.050 4.050 29 C -0.058 4.058 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.212 0.788 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.188 0.812 46 H 0.108 0.892 47 H 0.141 0.859 48 H 0.105 0.895 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.616 14.891 -28.691 34.024 hybrid contribution 0.629 -0.565 1.604 1.813 sum -9.987 14.326 -27.087 32.229 Atomic orbital electron populations 1.22993 0.78947 1.03928 1.00894 1.87991 1.21631 1.26016 1.94809 1.19869 0.92197 0.86528 0.91217 0.87163 1.20814 0.86917 0.83665 0.78424 1.90669 1.70037 1.31643 1.52050 1.47635 1.20996 1.07661 1.57309 1.22459 1.00190 0.84056 1.00840 1.22160 0.85108 1.03966 0.91842 1.22991 0.94434 0.89523 0.91321 0.89081 1.86541 1.49169 1.16980 1.84087 1.21643 0.95212 1.01339 0.82594 1.44132 1.84338 1.01743 1.03869 1.21441 0.98114 0.86338 0.98429 1.18824 1.37135 0.89825 0.90196 0.93192 1.25874 1.01631 1.00301 0.96419 1.70054 1.46727 1.41511 1.02662 0.85917 0.80375 0.79559 0.75828 1.19446 1.24753 1.19518 1.20106 1.19358 0.94345 0.95551 1.23693 0.98146 1.00343 0.90127 1.77381 1.25117 0.88985 1.23792 1.48894 1.51822 1.07095 1.07410 1.22295 1.04748 0.83491 0.94425 1.23004 0.98463 0.99059 0.85321 0.88743 0.93013 0.92585 0.90852 0.89556 0.89118 0.86282 0.91824 0.78761 0.89600 0.93478 0.96725 0.90873 0.94639 0.93355 0.81170 0.89241 0.85873 0.89470 0.76181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.81 113.37 1.23 1.74 16 2 O -0.39 -10.52 9.60 -129.99 -1.25 -11.77 16 3 C 0.16 3.69 2.21 29.10 0.06 3.75 16 4 H 0.11 1.83 6.77 -2.39 -0.02 1.81 16 5 C 0.51 15.20 6.71 87.66 0.59 15.79 16 6 O -0.57 -22.85 15.07 21.28 0.32 -22.53 16 7 N -0.60 -13.65 2.86 -846.77 -2.42 -16.06 16 8 C 0.07 0.72 8.42 127.77 1.08 1.80 16 9 C 0.09 2.30 5.11 86.38 0.44 2.74 16 10 C 0.08 2.55 3.48 30.60 0.11 2.66 16 11 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 12 O -0.56 -24.14 11.22 -141.60 -1.59 -25.73 16 13 C 0.12 4.21 5.41 86.38 0.47 4.67 16 14 N -0.62 -28.71 2.68 -726.94 -1.94 -30.65 16 15 C 0.10 4.15 8.33 127.77 1.06 5.22 16 16 C -0.23 -13.38 9.47 84.03 0.80 -12.58 16 17 H 0.05 3.23 7.73 -2.91 -0.02 3.21 16 18 C -0.05 -2.97 5.17 84.86 0.44 -2.53 16 19 N -0.96 -63.34 13.97 21.65 0.30 -63.04 16 20 Si 0.95 47.78 24.04 68.60 1.65 49.43 16 21 H -0.27 -12.43 6.37 99.48 0.63 -11.80 16 22 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 23 H -0.27 -12.87 6.90 99.48 0.69 -12.19 16 24 C -0.28 -5.20 4.66 -20.14 -0.09 -5.29 16 25 C 0.06 1.42 11.63 85.24 0.99 2.41 16 26 N -0.33 -7.16 12.58 -57.02 -0.72 -7.88 16 27 N -0.37 -4.84 4.01 -369.57 -1.48 -6.33 16 28 C 0.09 0.32 11.47 127.77 1.47 1.78 16 29 C 0.09 0.97 8.58 83.54 0.72 1.69 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 0.84 8.09 -2.38 -0.02 0.82 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.57 6.59 -2.39 -0.02 0.55 16 34 H 0.09 0.61 4.86 -2.39 -0.01 0.60 16 35 H 0.09 0.74 8.07 -2.39 -0.02 0.72 16 36 H 0.12 1.99 8.07 -2.39 -0.02 1.97 16 37 H 0.06 1.89 7.42 -2.39 -0.02 1.88 16 38 H 0.37 16.20 8.75 -74.05 -0.65 15.55 16 39 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 40 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 41 H 0.01 0.59 5.78 -2.39 -0.01 0.58 16 42 H 0.07 2.35 8.11 -2.39 -0.02 2.33 16 43 H 0.03 1.63 5.76 -2.39 -0.01 1.62 16 44 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 45 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.12 -0.39 8.14 -2.39 -0.02 -0.40 16 48 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.22 0.26 6.29 -2.91 -0.02 0.24 16 Total: -1.00 -92.17 391.48 2.44 -89.73 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.22 Total: 20.98 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 9.35 Total: 23.85 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.26 Total: -123.96 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -2.52 Total: -60.03 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.65 Total: 49.43 kcal Total: -92.17 2.44 -89.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700962921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.236 kcal (2) G-P(sol) polarization free energy of solvation -92.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds