Wall clock time and date at job start Sat Apr 11 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99854 * 2 1 4 4 H 1.08003 * 119.99772 * 202.67992 * 3 2 1 5 5 C 1.38813 * 120.00614 * 22.68438 * 3 2 1 6 6 N 1.31624 * 119.99318 * 11.48445 * 5 3 2 7 7 Si 1.86790 * 120.00510 * 191.49432 * 5 3 2 8 8 H 1.48498 * 109.47555 * 89.99363 * 7 5 3 9 9 H 1.48502 * 109.47211 * 209.99557 * 7 5 3 10 10 H 1.48504 * 109.46851 * 329.99375 * 7 5 3 11 11 C 1.46492 * 120.00141 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47588 * 269.99750 * 11 2 1 13 13 H 1.09002 * 109.47075 * 305.00220 * 12 11 2 14 14 O 1.42907 * 109.46780 * 64.99565 * 12 11 2 15 15 C 1.52993 * 109.47528 * 184.99917 * 12 11 2 16 16 N 1.46507 * 109.47129 * 180.02562 * 15 12 11 17 17 C 1.46504 * 119.99704 * 89.99934 * 16 15 12 18 18 C 1.34771 * 120.00023 * 269.99943 * 16 15 12 19 19 O 1.21287 * 119.99933 * 0.02562 * 18 16 15 20 20 C 1.50694 * 120.00112 * 180.02562 * 18 16 15 21 21 O 1.42904 * 109.47260 * 180.02562 * 20 18 16 22 22 C 1.42902 * 114.00003 * 180.02562 * 21 20 18 23 23 C 1.50698 * 109.46973 * 179.97438 * 22 21 20 24 24 N 1.30499 * 125.65098 * 90.02702 * 23 22 21 25 25 C 1.34128 * 109.25778 * 180.02562 * 24 23 22 26 26 C 1.34665 * 108.02071 * 359.97438 * 25 24 23 27 27 N 1.35040 * 125.65046 * 269.71594 * 23 22 21 28 28 C 1.46504 * 126.39715 * 0.02562 * 27 23 22 29 29 H 1.09004 * 109.47030 * 273.93139 * 1 2 3 30 30 H 1.08997 * 109.47226 * 33.92411 * 1 2 3 31 31 H 1.08995 * 109.47184 * 153.93446 * 1 2 3 32 32 H 0.97001 * 119.99277 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47599 * 149.99683 * 11 2 1 34 34 H 1.09001 * 109.47505 * 30.00054 * 11 2 1 35 35 H 0.96703 * 113.99545 * 60.00642 * 14 12 11 36 36 H 1.09002 * 109.47190 * 300.00232 * 15 12 11 37 37 H 1.08994 * 109.47455 * 59.99979 * 15 12 11 38 38 H 1.09001 * 109.46760 * 90.00427 * 17 16 15 39 39 H 1.09002 * 109.46495 * 210.00186 * 17 16 15 40 40 H 1.08994 * 109.47551 * 329.99962 * 17 16 15 41 41 H 1.09002 * 109.46996 * 300.00055 * 20 18 16 42 42 H 1.08993 * 109.47432 * 59.99803 * 20 18 16 43 43 H 1.09004 * 109.47141 * 299.99331 * 22 21 20 44 44 H 1.08998 * 109.47578 * 59.99484 * 22 21 20 45 45 H 1.08003 * 125.99223 * 180.02562 * 25 24 23 46 46 H 1.08007 * 126.59448 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.47023 * 89.99940 * 28 27 23 48 48 H 1.09000 * 109.47260 * 209.99973 * 28 27 23 49 49 H 1.08995 * 109.47121 * 330.00398 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1670 1.2221 -0.3607 5 6 1.5362 2.3417 0.4636 6 7 0.3911 2.2656 1.1082 7 14 2.3355 4.0046 0.1724 8 1 1.8569 4.5650 -1.1168 9 1 1.9741 4.9279 1.2780 10 1 3.8109 3.8431 0.1247 11 6 2.1975 -1.2686 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 2.9643 -0.9139 1.9811 14 8 1.2061 -1.9944 2.0805 15 6 3.3239 -2.9686 1.4430 16 7 3.5676 -3.3925 2.8240 17 6 2.6469 -4.3267 3.4768 18 6 4.6387 -2.9231 3.4939 19 8 5.4005 -2.1494 2.9536 20 6 4.8897 -3.3595 4.9143 21 8 6.0755 -2.7299 5.4036 22 6 6.4058 -3.0786 6.7495 23 6 7.6667 -2.3620 7.1591 24 7 7.7247 -1.1849 7.7195 25 6 9.0077 -0.8639 7.9425 26 6 9.7739 -1.8809 7.5041 27 7 8.9233 -2.8341 7.0123 28 6 9.3053 -4.1235 6.4311 29 1 -0.3633 0.0705 1.0253 30 1 -0.3633 0.8527 -0.5735 31 1 -0.3633 -0.9231 -0.4515 32 1 -0.0374 3.0732 1.4325 33 1 3.1499 -1.1382 -0.5144 34 1 1.6085 -2.0281 -0.5147 35 1 0.6956 -2.6957 1.6531 36 1 2.8121 -3.7657 0.9036 37 1 4.2746 -2.7525 0.9557 38 1 2.9790 -5.3492 3.2971 39 1 2.6324 -4.1325 4.5493 40 1 1.6447 -4.1933 3.0698 41 1 4.0428 -3.0726 5.5376 42 1 5.0134 -4.4420 4.9453 43 1 5.5903 -2.7865 7.4111 44 1 6.5615 -4.1552 6.8181 45 1 9.3640 0.0497 8.3951 46 1 10.8520 -1.9360 7.5382 47 1 9.4550 -4.0080 5.3576 48 1 10.2304 -4.4699 6.8917 49 1 8.5146 -4.8517 6.6113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700963352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:04 Heat of formation + Delta-G solvation = -20.819154 kcal Electronic energy + Delta-G solvation = -29949.462826 eV Core-core repulsion = 25722.057438 eV Total energy + Delta-G solvation = -4227.405388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.30356 -39.96278 -38.00075 -37.08597 -35.25147 -34.43227 -34.28969 -31.47941 -31.20250 -30.03843 -28.23122 -27.38168 -26.85448 -26.08692 -25.69079 -24.73022 -21.97747 -21.63981 -20.48790 -20.31712 -19.33373 -17.71866 -17.26090 -16.81455 -16.67824 -16.58658 -16.08347 -15.67424 -15.44287 -15.01212 -14.87221 -14.57778 -14.47139 -14.13630 -13.72498 -13.61372 -13.31111 -13.23376 -13.10724 -13.00976 -12.92895 -12.73156 -12.49716 -12.31689 -11.96997 -11.71837 -11.41609 -11.03680 -10.78681 -10.63228 -10.35004 -10.23843 -10.17497 -10.05475 -9.97243 -9.87062 -9.84834 -9.73505 -9.52771 -8.69678 -8.51481 -8.31122 -6.59996 -5.60985 -3.06537 1.62759 2.43860 2.62714 2.71064 3.03086 3.47661 3.54004 3.56323 3.73085 4.24488 4.31045 4.40229 4.58647 4.60205 4.66890 4.78017 4.84611 4.90509 4.97892 5.01557 5.05243 5.14912 5.18762 5.22021 5.37244 5.42383 5.51198 5.56962 5.66364 5.90009 5.97942 5.98370 6.04107 6.12047 6.50585 6.52363 6.62256 6.72082 6.85196 6.87399 6.95383 7.41246 7.49572 7.88245 7.88682 7.95393 8.27281 8.33338 8.51030 9.35204 9.97608 10.45992 11.43698 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011212 B = 0.002560 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.718982 B =10934.073344 C =12686.194712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.592 5.592 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.126 3.874 12 C 0.069 3.931 13 H 0.102 0.898 14 O -0.544 6.544 15 C 0.085 3.915 16 N -0.605 5.605 17 C 0.080 3.920 18 C 0.511 3.489 19 O -0.513 6.513 20 C 0.048 3.952 21 O -0.355 6.355 22 C 0.149 3.851 23 C 0.203 3.797 24 N -0.468 5.468 25 C -0.026 4.026 26 C -0.052 4.052 27 N -0.451 5.451 28 C 0.071 3.929 29 H 0.034 0.966 30 H 0.040 0.960 31 H -0.009 1.009 32 H 0.251 0.749 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.352 0.648 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.173 0.827 46 H 0.177 0.823 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.720 -22.235 11.693 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.314 5.314 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.003 4.003 12 C 0.006 3.994 13 H 0.119 0.881 14 O -0.346 6.346 15 C -0.038 4.038 16 N -0.341 5.341 17 C -0.063 4.063 18 C 0.297 3.703 19 O -0.387 6.387 20 C -0.032 4.032 21 O -0.272 6.272 22 C 0.071 3.929 23 C -0.058 4.058 24 N -0.188 5.188 25 C -0.175 4.175 26 C -0.185 4.185 27 N -0.135 5.135 28 C -0.072 4.072 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.009 0.991 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.196 0.804 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.190 0.810 46 H 0.194 0.806 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.686 -20.714 11.862 27.032 hybrid contribution 0.848 -0.185 -0.380 0.947 sum 13.534 -20.899 11.482 27.418 Atomic orbital electron populations 1.20758 0.82287 0.94910 0.99476 1.43852 1.01980 1.00194 1.85374 1.19221 0.98246 0.85406 1.35801 0.91413 1.25046 0.97769 0.98558 0.98168 1.70091 1.18120 1.26932 1.39679 0.86258 0.79004 0.84164 0.77194 1.21567 1.21707 1.20406 1.21436 0.96538 0.89341 0.92951 1.23350 0.83368 0.94472 0.98202 0.88057 1.86732 1.32765 1.59137 1.56003 1.22411 1.02025 0.98192 0.81216 1.47659 1.25226 1.46599 1.14578 1.21822 0.94614 0.91739 0.98149 1.20089 0.81218 0.81554 0.87426 1.90773 1.46034 1.33179 1.68712 1.22275 0.89287 0.97407 0.94209 1.88123 1.42643 1.69422 1.27039 1.20490 0.91568 0.96026 0.84854 1.22590 0.85711 0.93314 1.04203 1.70241 1.21737 1.10497 1.16344 1.22370 0.88656 1.00314 1.06197 1.22761 0.97193 0.91410 1.07165 1.45275 1.06852 1.15978 1.45376 1.22083 1.02486 0.82590 1.00045 0.94767 0.94120 0.99077 0.93875 0.93036 0.94289 0.80376 0.90705 0.89297 0.93034 0.91448 0.90071 0.89726 0.90424 0.89574 0.91707 0.80976 0.80586 0.89991 0.89469 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.33 8.61 59.85 0.52 4.85 16 2 N -0.59 -15.44 2.89 -181.13 -0.52 -15.96 16 3 C -0.26 -7.47 9.67 -15.06 -0.15 -7.61 16 4 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.90 -27.75 10.62 55.49 0.59 -27.16 16 7 Si 0.90 23.29 29.57 -169.99 -5.03 18.26 16 8 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 9 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 C 0.13 2.59 5.37 -4.04 -0.02 2.57 16 12 C 0.07 1.32 3.48 -26.73 -0.09 1.23 16 13 H 0.10 2.51 8.14 -51.93 -0.42 2.08 16 14 O -0.54 -10.07 11.62 -35.23 -0.41 -10.48 16 15 C 0.08 1.23 5.10 -4.04 -0.02 1.21 16 16 N -0.61 -8.09 2.80 -181.57 -0.51 -8.60 16 17 C 0.08 0.70 9.98 59.85 0.60 1.29 16 18 C 0.51 8.04 7.75 -10.99 -0.09 7.96 16 19 O -0.51 -10.80 16.08 -14.36 -0.23 -11.03 16 20 C 0.05 0.54 4.97 36.00 0.18 0.72 16 21 O -0.36 -5.03 9.86 -55.14 -0.54 -5.57 16 22 C 0.15 1.54 6.24 36.00 0.22 1.77 16 23 C 0.20 2.59 7.53 -155.42 -1.17 1.42 16 24 N -0.47 -7.04 11.25 -10.82 -0.12 -7.16 16 25 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 26 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 27 N -0.45 -4.52 3.15 -121.27 -0.38 -4.90 16 28 C 0.07 0.39 10.97 59.85 0.66 1.05 16 29 H 0.03 0.95 7.43 -51.93 -0.39 0.57 16 30 H 0.04 1.12 7.19 -51.93 -0.37 0.74 16 31 H -0.01 -0.20 7.85 -51.93 -0.41 -0.61 16 32 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 34 H 0.04 0.68 7.87 -51.93 -0.41 0.28 16 35 H 0.35 4.90 8.79 45.56 0.40 5.30 16 36 H 0.07 0.83 8.07 -51.93 -0.42 0.42 16 37 H 0.09 1.42 7.42 -51.93 -0.39 1.03 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 40 H 0.08 0.70 6.88 -51.93 -0.36 0.34 16 41 H 0.08 0.82 7.40 -51.93 -0.38 0.43 16 42 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.41 7.06 -51.93 -0.37 0.05 16 45 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 46 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.09 0.33 7.04 -51.93 -0.37 -0.03 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -41.82 405.95 -8.03 -49.84 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.13 Total: 1.40 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 0.14 Total: 15.24 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.95 Total: -63.78 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.18 Total: -27.09 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.03 Total: 18.26 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -41.82 -8.03 -49.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700963352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.022 kcal (2) G-P(sol) polarization free energy of solvation -41.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds