Wall clock time and date at job start Sat Apr 11 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99854 * 2 1 4 4 H 1.08003 * 119.99772 * 202.67992 * 3 2 1 5 5 C 1.38813 * 120.00614 * 22.68438 * 3 2 1 6 6 N 1.31624 * 119.99318 * 11.48445 * 5 3 2 7 7 Si 1.86790 * 120.00510 * 191.49432 * 5 3 2 8 8 H 1.48498 * 109.47555 * 89.99363 * 7 5 3 9 9 H 1.48502 * 109.47211 * 209.99557 * 7 5 3 10 10 H 1.48504 * 109.46851 * 329.99375 * 7 5 3 11 11 C 1.46492 * 120.00141 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47588 * 269.99750 * 11 2 1 13 13 H 1.09002 * 109.47075 * 305.00220 * 12 11 2 14 14 O 1.42907 * 109.46780 * 64.99565 * 12 11 2 15 15 C 1.52993 * 109.47528 * 184.99917 * 12 11 2 16 16 N 1.46507 * 109.47129 * 180.02562 * 15 12 11 17 17 C 1.46504 * 119.99704 * 89.99934 * 16 15 12 18 18 C 1.34771 * 120.00023 * 269.99943 * 16 15 12 19 19 O 1.21287 * 119.99933 * 0.02562 * 18 16 15 20 20 C 1.50694 * 120.00112 * 180.02562 * 18 16 15 21 21 O 1.42904 * 109.47260 * 180.02562 * 20 18 16 22 22 C 1.42902 * 114.00003 * 180.02562 * 21 20 18 23 23 C 1.50698 * 109.46973 * 179.97438 * 22 21 20 24 24 N 1.30499 * 125.65098 * 90.02702 * 23 22 21 25 25 C 1.34128 * 109.25778 * 180.02562 * 24 23 22 26 26 C 1.34665 * 108.02071 * 359.97438 * 25 24 23 27 27 N 1.35040 * 125.65046 * 269.71594 * 23 22 21 28 28 C 1.46504 * 126.39715 * 0.02562 * 27 23 22 29 29 H 1.09004 * 109.47030 * 273.93139 * 1 2 3 30 30 H 1.08997 * 109.47226 * 33.92411 * 1 2 3 31 31 H 1.08995 * 109.47184 * 153.93446 * 1 2 3 32 32 H 0.97001 * 119.99277 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47599 * 149.99683 * 11 2 1 34 34 H 1.09001 * 109.47505 * 30.00054 * 11 2 1 35 35 H 0.96703 * 113.99545 * 60.00642 * 14 12 11 36 36 H 1.09002 * 109.47190 * 300.00232 * 15 12 11 37 37 H 1.08994 * 109.47455 * 59.99979 * 15 12 11 38 38 H 1.09001 * 109.46760 * 90.00427 * 17 16 15 39 39 H 1.09002 * 109.46495 * 210.00186 * 17 16 15 40 40 H 1.08994 * 109.47551 * 329.99962 * 17 16 15 41 41 H 1.09002 * 109.46996 * 300.00055 * 20 18 16 42 42 H 1.08993 * 109.47432 * 59.99803 * 20 18 16 43 43 H 1.09004 * 109.47141 * 299.99331 * 22 21 20 44 44 H 1.08998 * 109.47578 * 59.99484 * 22 21 20 45 45 H 1.08003 * 125.99223 * 180.02562 * 25 24 23 46 46 H 1.08007 * 126.59448 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.47023 * 89.99940 * 28 27 23 48 48 H 1.09000 * 109.47260 * 209.99973 * 28 27 23 49 49 H 1.08995 * 109.47121 * 330.00398 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1670 1.2221 -0.3607 5 6 1.5362 2.3417 0.4636 6 7 0.3911 2.2656 1.1082 7 14 2.3355 4.0046 0.1724 8 1 1.8569 4.5650 -1.1168 9 1 1.9741 4.9279 1.2780 10 1 3.8109 3.8431 0.1247 11 6 2.1975 -1.2686 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 2.9643 -0.9139 1.9811 14 8 1.2061 -1.9944 2.0805 15 6 3.3239 -2.9686 1.4430 16 7 3.5676 -3.3925 2.8240 17 6 2.6469 -4.3267 3.4768 18 6 4.6387 -2.9231 3.4939 19 8 5.4005 -2.1494 2.9536 20 6 4.8897 -3.3595 4.9143 21 8 6.0755 -2.7299 5.4036 22 6 6.4058 -3.0786 6.7495 23 6 7.6667 -2.3620 7.1591 24 7 7.7247 -1.1849 7.7195 25 6 9.0077 -0.8639 7.9425 26 6 9.7739 -1.8809 7.5041 27 7 8.9233 -2.8341 7.0123 28 6 9.3053 -4.1235 6.4311 29 1 -0.3633 0.0705 1.0253 30 1 -0.3633 0.8527 -0.5735 31 1 -0.3633 -0.9231 -0.4515 32 1 -0.0374 3.0732 1.4325 33 1 3.1499 -1.1382 -0.5144 34 1 1.6085 -2.0281 -0.5147 35 1 0.6956 -2.6957 1.6531 36 1 2.8121 -3.7657 0.9036 37 1 4.2746 -2.7525 0.9557 38 1 2.9790 -5.3492 3.2971 39 1 2.6324 -4.1325 4.5493 40 1 1.6447 -4.1933 3.0698 41 1 4.0428 -3.0726 5.5376 42 1 5.0134 -4.4420 4.9453 43 1 5.5903 -2.7865 7.4111 44 1 6.5615 -4.1552 6.8181 45 1 9.3640 0.0497 8.3951 46 1 10.8520 -1.9360 7.5382 47 1 9.4550 -4.0080 5.3576 48 1 10.2304 -4.4699 6.8917 49 1 8.5146 -4.8517 6.6113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700963352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:03 Heat of formation + Delta-G solvation = -53.500923 kcal Electronic energy + Delta-G solvation = -29950.880014 eV Core-core repulsion = 25722.057438 eV Total energy + Delta-G solvation = -4228.822576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.07608 -41.10236 -39.16041 -38.41931 -36.85853 -35.94858 -34.99331 -33.34022 -32.21653 -31.41666 -29.31540 -28.09356 -27.93207 -27.76031 -26.90966 -26.01502 -23.66046 -22.41317 -22.26955 -21.11983 -20.41974 -18.85400 -18.52512 -18.10338 -17.75065 -17.55254 -17.41554 -16.69270 -16.62582 -16.33318 -16.25244 -15.98770 -15.52692 -15.45555 -15.07539 -14.80262 -14.67168 -14.45353 -14.03991 -13.93124 -13.81224 -13.55333 -13.48962 -13.30821 -13.14458 -13.08396 -12.84960 -12.80758 -12.58110 -12.48838 -12.15574 -12.06002 -12.00835 -11.79366 -11.30903 -11.04376 -10.85825 -10.83670 -10.62610 -10.61202 -9.59170 -9.49274 -8.68871 -7.84914 -5.31393 0.84757 1.39567 1.41972 1.50352 1.53368 1.70033 1.89138 2.10868 2.47738 2.93384 3.26708 3.43314 3.60640 3.65107 3.74941 3.82465 3.90894 4.06234 4.12105 4.14960 4.19165 4.22459 4.33919 4.39516 4.40283 4.50746 4.52909 4.57688 4.66695 4.72530 4.75244 4.85187 4.88658 4.97286 5.05794 5.25065 5.27781 5.36158 5.52474 5.60941 5.75949 5.82860 5.89894 6.16659 6.31804 6.39544 7.06692 7.08620 7.15058 7.17170 7.89028 8.28704 9.17568 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011212 B = 0.002560 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.718982 B =10934.073344 C =12686.194712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.612 5.612 3 C -0.265 4.265 4 H 0.062 0.938 5 C -0.054 4.054 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.277 1.277 9 H -0.294 1.294 10 H -0.276 1.276 11 C 0.121 3.879 12 C 0.088 3.912 13 H 0.032 0.968 14 O -0.559 6.559 15 C 0.096 3.904 16 N -0.602 5.602 17 C 0.070 3.930 18 C 0.495 3.505 19 O -0.584 6.584 20 C 0.054 3.946 21 O -0.398 6.398 22 C 0.148 3.852 23 C 0.176 3.824 24 N -0.524 5.524 25 C -0.065 4.065 26 C -0.037 4.037 27 N -0.450 5.450 28 C 0.062 3.938 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.036 0.964 32 H 0.246 0.754 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.377 0.623 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.183 0.817 46 H 0.216 0.784 47 H 0.077 0.923 48 H 0.116 0.884 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.213 -26.136 11.753 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.334 5.334 3 C -0.396 4.396 4 H 0.080 0.920 5 C -0.249 4.249 6 N -0.580 5.580 7 Si 0.792 3.208 8 H -0.204 1.204 9 H -0.221 1.221 10 H -0.202 1.202 11 C -0.006 4.006 12 C 0.025 3.975 13 H 0.050 0.950 14 O -0.365 6.365 15 C -0.028 4.028 16 N -0.335 5.335 17 C -0.071 4.071 18 C 0.284 3.716 19 O -0.464 6.464 20 C -0.025 4.025 21 O -0.316 6.316 22 C 0.071 3.929 23 C -0.086 4.086 24 N -0.245 5.245 25 C -0.213 4.213 26 C -0.172 4.172 27 N -0.133 5.133 28 C -0.079 4.079 29 H 0.021 0.979 30 H 0.028 0.972 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.225 0.775 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.201 0.799 46 H 0.233 0.767 47 H 0.095 0.905 48 H 0.135 0.865 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.154 -24.720 11.917 30.432 hybrid contribution 0.706 0.909 -0.405 1.220 sum 13.860 -23.811 11.513 29.860 Atomic orbital electron populations 1.20467 0.82137 0.95741 0.97418 1.44077 1.02441 1.01258 1.85643 1.19494 0.98113 0.87134 1.34834 0.91996 1.25781 0.98633 1.01826 0.98706 1.70254 1.19397 1.27239 1.41087 0.85320 0.78132 0.80199 0.77172 1.20385 1.22088 1.20150 1.21662 0.96571 0.88133 0.94202 1.22741 0.84150 0.94926 0.95638 0.94970 1.86679 1.32825 1.60565 1.56448 1.22155 1.00455 0.97360 0.82826 1.47796 1.25215 1.46411 1.14111 1.22194 0.93774 0.92353 0.98759 1.21074 0.80890 0.80507 0.89132 1.90734 1.48685 1.36425 1.70541 1.22406 0.89141 0.99921 0.91047 1.88064 1.43736 1.70928 1.28910 1.20733 0.90777 0.98271 0.83114 1.23035 0.87524 0.93353 1.04654 1.70146 1.23721 1.12434 1.18238 1.22787 0.88475 1.02026 1.08022 1.23364 0.98697 0.90263 1.04835 1.45579 1.06057 1.17188 1.44464 1.22430 1.04661 0.80993 0.99778 0.97890 0.97197 0.94568 0.94443 0.93431 0.89932 0.77549 0.85767 0.91236 0.89293 0.89942 0.89681 0.88134 0.85248 0.89453 0.87186 0.79947 0.76706 0.90479 0.86548 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.52 8.61 127.77 1.10 10.62 16 2 N -0.61 -32.13 2.89 -726.96 -2.10 -34.23 16 3 C -0.27 -15.82 9.67 84.03 0.81 -15.01 16 4 H 0.06 3.68 7.85 -2.91 -0.02 3.65 16 5 C -0.05 -3.30 5.12 84.86 0.43 -2.87 16 6 N -0.93 -59.20 10.62 21.65 0.23 -58.97 16 7 Si 0.96 49.30 29.57 68.60 2.03 51.32 16 8 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 9 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 10 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 11 C 0.12 4.87 5.37 86.38 0.46 5.33 16 12 C 0.09 3.38 3.48 30.59 0.11 3.48 16 13 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 14 O -0.56 -19.96 11.62 -148.98 -1.73 -21.69 16 15 C 0.10 2.63 5.10 86.38 0.44 3.07 16 16 N -0.60 -14.91 2.80 -846.76 -2.37 -17.28 16 17 C 0.07 0.93 9.98 127.77 1.28 2.20 16 18 C 0.50 15.44 7.75 87.66 0.68 16.12 16 19 O -0.58 -25.86 16.08 15.98 0.26 -25.61 16 20 C 0.05 1.11 4.97 71.23 0.35 1.46 16 21 O -0.40 -11.11 9.86 -129.94 -1.28 -12.40 16 22 C 0.15 2.90 6.24 71.24 0.44 3.34 16 23 C 0.18 4.48 7.53 138.13 1.04 5.52 16 24 N -0.52 -16.47 11.25 -188.14 -2.12 -18.58 16 25 C -0.07 -1.60 11.87 83.52 0.99 -0.61 16 26 C -0.04 -0.67 11.58 83.08 0.96 0.29 16 27 N -0.45 -8.40 3.15 -537.60 -1.69 -10.10 16 28 C 0.06 0.52 10.97 127.77 1.40 1.92 16 29 H 0.00 0.16 7.43 -2.39 -0.02 0.14 16 30 H 0.01 0.52 7.19 -2.39 -0.02 0.51 16 31 H 0.04 1.48 7.85 -2.39 -0.02 1.46 16 32 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.05 1.93 8.03 -2.39 -0.02 1.91 16 34 H 0.08 2.59 7.87 -2.39 -0.02 2.57 16 35 H 0.38 9.19 8.79 -74.06 -0.65 8.53 16 36 H 0.12 2.21 8.07 -2.39 -0.02 2.19 16 37 H 0.07 2.22 7.42 -2.39 -0.02 2.20 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.87 6.44 -2.39 -0.02 0.85 16 40 H 0.08 1.10 6.88 -2.39 -0.02 1.08 16 41 H 0.10 1.72 7.40 -2.39 -0.02 1.70 16 42 H 0.13 1.27 8.11 -2.39 -0.02 1.25 16 43 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.11 1.03 7.06 -2.39 -0.02 1.01 16 45 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 46 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 49 H 0.11 0.44 7.04 -2.39 -0.02 0.42 16 Total: -1.00 -100.96 405.95 2.03 -98.92 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.30 Total: 13.73 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 10.51 Total: 34.86 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -8.05 Total: -139.15 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -2.75 Total: -59.69 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.03 Total: 51.32 kcal Total: -100.96 2.03 -98.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700963352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.421 kcal (2) G-P(sol) polarization free energy of solvation -100.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds