Wall clock time and date at job start Sat Apr 11 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39561 * 120.13731 * 196.77075 * 3 2 1 5 5 C 1.37958 * 119.85176 * 180.27696 * 4 3 2 6 6 C 1.38362 * 120.14153 * 359.72824 * 5 4 3 7 7 C 1.38321 * 120.29195 * 359.97438 * 6 5 4 8 8 C 1.37999 * 120.13723 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.07057 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47047 * 265.00130 * 9 8 7 11 11 O 1.21283 * 119.99918 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00009 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.62744 * 5.19665 * 12 10 9 14 14 C 1.53192 * 108.77664 * 126.36773 * 13 12 10 15 15 C 1.53041 * 109.31349 * 54.62834 * 14 13 12 16 16 C 1.53040 * 109.54077 * 298.63724 * 15 14 13 17 17 C 1.46929 * 120.62826 * 185.16552 * 12 10 9 18 18 H 1.08996 * 109.58365 * 113.70561 * 17 12 10 19 19 C 1.52991 * 109.58749 * 353.42095 * 17 12 10 20 20 N 1.46503 * 109.47230 * 179.34337 * 19 17 12 21 21 C 1.46497 * 119.99963 * 266.25517 * 20 19 17 22 22 C 1.36937 * 119.99965 * 86.24594 * 20 19 17 23 23 H 1.07993 * 119.99835 * 36.44680 * 22 20 19 24 24 C 1.38814 * 120.00201 * 216.44102 * 22 20 19 25 25 N 1.31617 * 119.99940 * 190.26175 * 24 22 20 26 26 Si 1.86800 * 120.00003 * 10.25374 * 24 22 20 27 27 H 1.48497 * 109.47334 * 267.44381 * 26 24 22 28 28 H 1.48498 * 109.46984 * 27.44324 * 26 24 22 29 29 H 1.48496 * 109.47175 * 147.44359 * 26 24 22 30 30 H 4.52086 * 14.02014 * 359.97438 * 4 2 1 31 31 H 1.07997 * 120.07428 * 359.97186 * 4 3 2 32 32 H 1.07999 * 119.92172 * 179.69827 * 5 4 3 33 33 H 1.08000 * 119.85510 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.93299 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47297 * 145.00158 * 9 8 7 36 36 H 1.08998 * 109.47205 * 24.99743 * 9 8 7 37 37 H 1.09001 * 109.57827 * 246.15116 * 13 12 10 38 38 H 1.08991 * 109.59076 * 6.42858 * 13 12 10 39 39 H 1.09002 * 109.49746 * 174.58174 * 14 13 12 40 40 H 1.09003 * 109.49497 * 294.64688 * 14 13 12 41 41 H 1.08997 * 109.45937 * 58.65603 * 15 14 13 42 42 H 1.08999 * 109.45867 * 178.62663 * 15 14 13 43 43 H 1.08998 * 109.49390 * 301.41319 * 16 15 14 44 44 H 1.08996 * 109.49870 * 181.31621 * 16 15 14 45 45 H 1.09003 * 109.47441 * 59.34359 * 19 17 12 46 46 H 1.09000 * 109.47302 * 299.34138 * 19 17 12 47 47 H 1.09006 * 109.47176 * 184.70007 * 21 20 19 48 48 H 1.08999 * 109.46979 * 304.69987 * 21 20 19 49 49 H 1.08998 * 109.47194 * 64.69995 * 21 20 19 50 50 H 0.96996 * 119.99649 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3061 1.1566 0.3483 5 6 4.6857 1.1523 0.3407 6 6 5.3750 0.0037 -0.0056 7 6 4.6870 -1.1471 -0.3458 8 6 3.3071 -1.1559 -0.3422 9 6 2.5591 -2.4107 -0.7126 10 6 2.1961 -2.3661 -2.1746 11 8 2.5132 -1.4094 -2.8492 12 7 1.5192 -3.3894 -2.7324 13 6 1.0292 -4.5014 -1.9065 14 6 -0.4718 -4.6775 -2.1568 15 6 -0.7176 -4.8530 -3.6572 16 6 -0.2470 -3.6020 -4.4027 17 6 1.2566 -3.4137 -4.1778 18 1 1.8027 -4.2391 -4.6345 19 6 1.7072 -2.0922 -4.8033 20 7 1.4587 -2.1252 -6.2467 21 6 2.5205 -2.5479 -7.1633 22 6 0.2339 -1.7611 -6.7391 23 1 -0.3169 -0.9562 -6.2754 24 6 -0.2996 -2.4265 -7.8343 25 7 -1.3725 -1.9541 -8.4328 26 14 0.5052 -3.9922 -8.4589 27 1 1.4844 -3.6550 -9.5231 28 1 1.2056 -4.6697 -7.3384 29 1 -0.5347 -4.8968 -9.0118 30 1 -1.0501 -0.0009 -0.0008 31 1 2.7692 2.0539 0.6183 32 1 5.2287 2.0476 0.6053 33 1 6.4550 0.0054 -0.0096 34 1 5.2309 -2.0404 -0.6148 35 1 1.6505 -2.4819 -0.1147 36 1 3.1891 -3.2792 -0.5210 37 1 1.5548 -5.4170 -2.1776 38 1 1.2026 -4.2787 -0.8537 39 1 -0.8285 -5.5590 -1.6242 40 1 -1.0058 -3.7964 -1.8009 41 1 -0.1635 -5.7199 -4.0169 42 1 -1.7823 -5.0029 -3.8356 43 1 -0.7831 -2.7309 -4.0261 44 1 -0.4437 -3.7181 -5.4685 45 1 2.7723 -1.9485 -4.6212 46 1 1.1481 -1.2697 -4.3571 47 1 2.1809 -2.4290 -8.1922 48 1 3.4068 -1.9348 -7.0000 49 1 2.7637 -3.5944 -6.9796 50 1 -1.7454 -2.4193 -9.1978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707278946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:14 Heat of formation + Delta-G solvation = 84.812861 kcal Electronic energy + Delta-G solvation = -30723.224953 eV Core-core repulsion = 26911.249376 eV Total energy + Delta-G solvation = -3811.975577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.47889 -39.25715 -37.04698 -35.71319 -33.98689 -33.02433 -32.41854 -31.73012 -30.71459 -30.26027 -27.93899 -26.65566 -25.71782 -24.36861 -23.38955 -22.69519 -21.86367 -20.46292 -20.34556 -18.95526 -18.53310 -16.78814 -16.55307 -16.38111 -15.89217 -15.65566 -15.15736 -15.08010 -14.72813 -14.25807 -13.99872 -13.87644 -13.77165 -13.39565 -13.28355 -13.07993 -13.03011 -12.81393 -12.63936 -12.20891 -12.10165 -12.02030 -11.74392 -11.52416 -11.38496 -11.27973 -11.17028 -11.01012 -10.62195 -10.43516 -10.38068 -10.26765 -10.06428 -9.97756 -9.89724 -9.46898 -9.11817 -8.85912 -8.52812 -8.39156 -8.12007 -6.70417 -5.87859 -3.33281 0.88540 1.26005 2.74449 2.90736 2.99240 3.26054 3.34730 3.47594 3.50601 3.92907 4.25919 4.54155 4.55949 4.70698 4.76911 4.89903 4.92938 5.03541 5.11020 5.21102 5.28424 5.32274 5.35519 5.42555 5.49936 5.50624 5.58414 5.62103 5.64899 5.88487 5.93645 6.00027 6.02113 6.08648 6.21658 6.26388 6.31375 6.36375 6.38979 6.44401 6.48513 6.56934 6.67453 6.75112 6.83509 6.86732 6.94718 7.23945 7.36535 7.53396 7.74209 8.15678 8.42535 8.56877 9.08337 9.80245 10.21926 11.28308 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003651 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.464543 B = 7667.917858 C = 8307.176880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C 0.026 3.974 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.038 4.038 9 C -0.106 4.106 10 C 0.513 3.487 11 O -0.515 6.515 12 N -0.607 5.607 13 C 0.107 3.893 14 C -0.132 4.132 15 C -0.123 4.123 16 C -0.119 4.119 17 C 0.126 3.874 18 H 0.058 0.942 19 C 0.168 3.832 20 N -0.615 5.615 21 C 0.102 3.898 22 C -0.251 4.251 23 H 0.080 0.920 24 C 0.025 3.975 25 N -0.915 5.915 26 Si 0.888 3.112 27 H -0.290 1.290 28 H -0.266 1.266 29 H -0.306 1.306 30 H 0.223 0.777 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.020 0.980 49 H 0.012 0.988 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.625 -3.317 21.652 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C 0.026 3.974 4 C -0.115 4.115 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.039 4.039 9 C -0.146 4.146 10 C 0.300 3.700 11 O -0.390 6.390 12 N -0.342 5.342 13 C -0.016 4.016 14 C -0.170 4.170 15 C -0.161 4.161 16 C -0.157 4.157 17 C 0.022 3.978 18 H 0.076 0.924 19 C 0.042 3.958 20 N -0.340 5.340 21 C -0.043 4.043 22 C -0.380 4.380 23 H 0.098 0.902 24 C -0.173 4.173 25 N -0.559 5.559 26 Si 0.719 3.281 27 H -0.218 1.218 28 H -0.191 1.191 29 H -0.235 1.235 30 H 0.239 0.761 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.039 0.961 49 H 0.030 0.970 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.703 -2.804 21.138 23.031 hybrid contribution 0.010 -1.139 -0.561 1.269 sum 8.712 -3.942 20.577 22.691 Atomic orbital electron populations 1.24873 0.95768 0.99129 0.99339 1.19930 0.91990 1.01383 1.01301 1.15766 0.86556 0.93867 1.01189 1.21147 0.94233 0.96904 0.99167 1.21032 0.93837 0.98386 1.00700 1.21182 0.99958 0.92883 0.98829 1.20900 0.92952 0.98842 0.99813 1.19352 0.93373 0.93501 0.97636 1.20785 1.01585 0.96910 0.95357 1.20289 0.78370 0.82586 0.88762 1.90803 1.53769 1.32453 1.61984 1.48410 1.55082 1.21488 1.09176 1.21700 0.95066 0.90041 0.94839 1.21896 0.95463 1.01807 0.97866 1.21598 1.01099 0.99206 0.94183 1.21929 0.94511 0.96363 1.02931 1.22351 0.96516 1.02147 0.76822 0.92415 1.21520 0.99481 0.92628 0.82155 1.44450 1.10434 1.78211 1.00877 1.21425 0.91752 0.96193 0.94968 1.18888 0.93604 1.12705 1.12848 0.90219 1.25485 0.95585 0.97732 0.98537 1.69766 1.23306 1.40329 1.22463 0.86903 0.77558 0.84919 0.78713 1.21785 1.19122 1.23465 0.76069 0.85723 0.85688 0.85799 0.85723 0.88267 0.88229 0.91735 0.90445 0.91446 0.91603 0.92578 0.92038 0.92015 0.88230 0.91793 0.92042 0.92251 0.96135 0.96985 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.15 -2.02 11.80 -38.84 -0.46 -2.48 16 3 C 0.03 0.36 5.72 -107.00 -0.61 -0.26 16 4 C -0.10 -1.14 9.75 -39.19 -0.38 -1.52 16 5 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 6 C -0.11 -1.11 10.04 -39.51 -0.40 -1.51 16 7 C -0.11 -1.20 9.67 -39.64 -0.38 -1.58 16 8 C -0.04 -0.49 4.41 -104.23 -0.46 -0.95 16 9 C -0.11 -1.25 3.74 -29.03 -0.11 -1.36 16 10 C 0.51 8.14 7.59 -10.98 -0.08 8.06 16 11 O -0.51 -10.25 11.44 5.55 0.06 -10.18 16 12 N -0.61 -9.37 2.97 -165.22 -0.49 -9.86 16 13 C 0.11 1.21 6.33 -3.71 -0.02 1.19 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 15 C -0.12 -1.85 5.88 -26.69 -0.16 -2.01 16 16 C -0.12 -2.32 4.55 -26.61 -0.12 -2.44 16 17 C 0.13 2.41 3.19 -67.60 -0.22 2.19 16 18 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 19 C 0.17 3.77 3.70 -4.04 -0.01 3.76 16 20 N -0.61 -15.43 2.49 -181.12 -0.45 -15.88 16 21 C 0.10 2.36 8.39 59.85 0.50 2.87 16 22 C -0.25 -7.13 7.90 -15.06 -0.12 -7.25 16 23 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 24 C 0.03 0.73 5.02 -17.43 -0.09 0.64 16 25 N -0.92 -28.26 13.97 55.49 0.78 -27.49 16 26 Si 0.89 22.60 23.72 -169.99 -4.03 18.57 16 27 H -0.29 -7.30 6.79 56.52 0.38 -6.92 16 28 H -0.27 -6.49 6.13 56.52 0.35 -6.14 16 29 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 30 H 0.22 1.93 7.80 -54.09 -0.42 1.51 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.10 1.06 6.62 -51.93 -0.34 0.71 16 36 H 0.10 0.89 8.02 -51.93 -0.42 0.47 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.67 5.96 -51.93 -0.31 0.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.10 2.32 5.63 -51.93 -0.29 2.03 16 45 H 0.06 1.45 6.29 -51.93 -0.33 1.13 16 46 H 0.06 1.52 7.02 -51.93 -0.36 1.16 16 47 H 0.06 1.46 4.78 -51.93 -0.25 1.21 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.01 0.27 6.68 -51.93 -0.35 -0.08 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -34.13 390.20 -9.14 -43.27 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.77 Total: 3.22 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.11 Total: -7.54 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.17 Total: -53.23 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.03 Total: 18.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.13 -9.14 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.083 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds