Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39561 * 120.13731 * 196.77075 * 3 2 1 5 5 C 1.37958 * 119.85176 * 180.27696 * 4 3 2 6 6 C 1.38362 * 120.14153 * 359.72824 * 5 4 3 7 7 C 1.38321 * 120.29195 * 359.97438 * 6 5 4 8 8 C 1.37999 * 120.13723 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.07057 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47047 * 265.00130 * 9 8 7 11 11 O 1.21283 * 119.99918 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00009 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.62744 * 5.19665 * 12 10 9 14 14 C 1.53192 * 108.77664 * 126.36773 * 13 12 10 15 15 C 1.53041 * 109.31349 * 54.62834 * 14 13 12 16 16 C 1.53040 * 109.54077 * 298.63724 * 15 14 13 17 17 C 1.46929 * 120.62826 * 185.16552 * 12 10 9 18 18 H 1.08996 * 109.58365 * 113.70561 * 17 12 10 19 19 C 1.52991 * 109.58749 * 353.42095 * 17 12 10 20 20 N 1.46503 * 109.47230 * 179.34337 * 19 17 12 21 21 C 1.46497 * 119.99963 * 266.25517 * 20 19 17 22 22 C 1.36937 * 119.99965 * 86.24594 * 20 19 17 23 23 H 1.07993 * 119.99835 * 36.44680 * 22 20 19 24 24 C 1.38814 * 120.00201 * 216.44102 * 22 20 19 25 25 N 1.31617 * 119.99940 * 190.26175 * 24 22 20 26 26 Si 1.86800 * 120.00003 * 10.25374 * 24 22 20 27 27 H 1.48497 * 109.47334 * 267.44381 * 26 24 22 28 28 H 1.48498 * 109.46984 * 27.44324 * 26 24 22 29 29 H 1.48496 * 109.47175 * 147.44359 * 26 24 22 30 30 H 4.52086 * 14.02014 * 359.97438 * 4 2 1 31 31 H 1.07997 * 120.07428 * 359.97186 * 4 3 2 32 32 H 1.07999 * 119.92172 * 179.69827 * 5 4 3 33 33 H 1.08000 * 119.85510 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.93299 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47297 * 145.00158 * 9 8 7 36 36 H 1.08998 * 109.47205 * 24.99743 * 9 8 7 37 37 H 1.09001 * 109.57827 * 246.15116 * 13 12 10 38 38 H 1.08991 * 109.59076 * 6.42858 * 13 12 10 39 39 H 1.09002 * 109.49746 * 174.58174 * 14 13 12 40 40 H 1.09003 * 109.49497 * 294.64688 * 14 13 12 41 41 H 1.08997 * 109.45937 * 58.65603 * 15 14 13 42 42 H 1.08999 * 109.45867 * 178.62663 * 15 14 13 43 43 H 1.08998 * 109.49390 * 301.41319 * 16 15 14 44 44 H 1.08996 * 109.49870 * 181.31621 * 16 15 14 45 45 H 1.09003 * 109.47441 * 59.34359 * 19 17 12 46 46 H 1.09000 * 109.47302 * 299.34138 * 19 17 12 47 47 H 1.09006 * 109.47176 * 184.70007 * 21 20 19 48 48 H 1.08999 * 109.46979 * 304.69987 * 21 20 19 49 49 H 1.08998 * 109.47194 * 64.69995 * 21 20 19 50 50 H 0.96996 * 119.99649 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3061 1.1566 0.3483 5 6 4.6857 1.1523 0.3407 6 6 5.3750 0.0037 -0.0056 7 6 4.6870 -1.1471 -0.3458 8 6 3.3071 -1.1559 -0.3422 9 6 2.5591 -2.4107 -0.7126 10 6 2.1961 -2.3661 -2.1746 11 8 2.5132 -1.4094 -2.8492 12 7 1.5192 -3.3894 -2.7324 13 6 1.0292 -4.5014 -1.9065 14 6 -0.4718 -4.6775 -2.1568 15 6 -0.7176 -4.8530 -3.6572 16 6 -0.2470 -3.6020 -4.4027 17 6 1.2566 -3.4137 -4.1778 18 1 1.8027 -4.2391 -4.6345 19 6 1.7072 -2.0922 -4.8033 20 7 1.4587 -2.1252 -6.2467 21 6 2.5205 -2.5479 -7.1633 22 6 0.2339 -1.7611 -6.7391 23 1 -0.3169 -0.9562 -6.2754 24 6 -0.2996 -2.4265 -7.8343 25 7 -1.3725 -1.9541 -8.4328 26 14 0.5052 -3.9922 -8.4589 27 1 1.4844 -3.6550 -9.5231 28 1 1.2056 -4.6697 -7.3384 29 1 -0.5347 -4.8968 -9.0118 30 1 -1.0501 -0.0009 -0.0008 31 1 2.7692 2.0539 0.6183 32 1 5.2287 2.0476 0.6053 33 1 6.4550 0.0054 -0.0096 34 1 5.2309 -2.0404 -0.6148 35 1 1.6505 -2.4819 -0.1147 36 1 3.1891 -3.2792 -0.5210 37 1 1.5548 -5.4170 -2.1776 38 1 1.2026 -4.2787 -0.8537 39 1 -0.8285 -5.5590 -1.6242 40 1 -1.0058 -3.7964 -1.8009 41 1 -0.1635 -5.7199 -4.0169 42 1 -1.7823 -5.0029 -3.8356 43 1 -0.7831 -2.7309 -4.0261 44 1 -0.4437 -3.7181 -5.4685 45 1 2.7723 -1.9485 -4.6212 46 1 1.1481 -1.2697 -4.3571 47 1 2.1809 -2.4290 -8.1922 48 1 3.4068 -1.9348 -7.0000 49 1 2.7637 -3.5944 -6.9796 50 1 -1.7454 -2.4193 -9.1978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707278946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = 64.848134 kcal Electronic energy + Delta-G solvation = -30724.090689 eV Core-core repulsion = 26911.249376 eV Total energy + Delta-G solvation = -3812.841313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.68633 -40.20817 -38.39827 -37.49372 -34.91384 -34.22998 -33.86598 -33.35791 -32.23880 -31.12914 -28.97759 -28.23918 -27.72925 -25.64966 -24.29900 -24.08782 -22.99045 -22.01401 -21.65294 -20.06782 -19.54636 -18.87246 -17.86782 -17.34929 -17.14762 -16.87119 -16.76630 -16.12598 -15.92598 -15.63374 -15.42040 -15.19050 -14.96122 -14.69637 -14.60423 -14.51770 -14.21093 -14.12301 -13.92575 -13.87729 -13.63919 -13.33610 -13.11505 -12.99361 -12.44569 -12.37103 -12.20084 -12.11944 -12.08092 -12.03971 -11.94460 -11.83064 -11.64522 -11.49781 -11.36880 -11.30659 -10.87854 -10.24010 -9.73108 -9.45001 -9.37544 -8.76563 -8.15008 -5.59906 0.01611 0.42082 1.30277 1.38240 1.49348 1.71331 1.76598 2.03130 2.12368 2.41192 3.01330 3.14343 3.37420 3.43617 3.65157 3.77891 3.91286 3.95328 3.96093 4.08016 4.17503 4.19959 4.33098 4.38426 4.44194 4.47917 4.49063 4.56387 4.64349 4.67993 4.68926 4.73734 4.76893 4.83773 4.88547 5.01563 5.04208 5.08744 5.12967 5.19539 5.23294 5.32228 5.39040 5.49988 5.55531 5.55837 5.59048 5.76198 5.94112 6.04262 6.14351 6.55728 6.57625 6.94591 7.30410 7.62981 8.03818 9.05166 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003651 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.464543 B = 7667.917858 C = 8307.176880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C -0.005 4.005 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.058 4.058 9 C -0.094 4.094 10 C 0.507 3.493 11 O -0.564 6.564 12 N -0.607 5.607 13 C 0.101 3.899 14 C -0.126 4.126 15 C -0.119 4.119 16 C -0.113 4.113 17 C 0.138 3.862 18 H 0.061 0.939 19 C 0.181 3.819 20 N -0.628 5.628 21 C 0.100 3.900 22 C -0.238 4.238 23 H 0.030 0.970 24 C -0.025 4.025 25 N -0.963 5.963 26 Si 0.953 3.047 27 H -0.280 1.280 28 H -0.246 1.246 29 H -0.310 1.310 30 H 0.248 0.752 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.031 0.969 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.024 0.976 47 H 0.045 0.955 48 H 0.040 0.960 49 H 0.033 0.967 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -6.289 23.944 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.179 4.179 3 C -0.005 4.005 4 C -0.132 4.132 5 C -0.141 4.141 6 C -0.130 4.130 7 C -0.133 4.133 8 C -0.058 4.058 9 C -0.133 4.133 10 C 0.297 3.703 11 O -0.443 6.443 12 N -0.341 5.341 13 C -0.020 4.020 14 C -0.164 4.164 15 C -0.157 4.157 16 C -0.152 4.152 17 C 0.032 3.968 18 H 0.079 0.921 19 C 0.057 3.943 20 N -0.355 5.355 21 C -0.044 4.044 22 C -0.368 4.368 23 H 0.047 0.953 24 C -0.219 4.219 25 N -0.609 5.609 26 Si 0.781 3.219 27 H -0.207 1.207 28 H -0.169 1.169 29 H -0.239 1.239 30 H 0.265 0.735 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.069 -5.802 23.493 26.610 hybrid contribution -0.714 -0.035 -1.201 1.398 sum 10.355 -5.836 22.292 25.263 Atomic orbital electron populations 1.25618 0.96590 0.98184 0.98660 1.20479 0.92869 1.02393 1.02167 1.16120 0.86745 0.95054 1.02544 1.21395 0.95300 0.96861 0.99655 1.21399 0.93300 0.99624 0.99730 1.21594 1.01504 0.92350 0.97572 1.21249 0.92568 1.00122 0.99356 1.19570 0.94253 0.93673 0.98343 1.20768 1.02749 0.98106 0.91690 1.21066 0.77363 0.81557 0.90351 1.90776 1.55656 1.34284 1.63577 1.48417 1.54995 1.22862 1.07794 1.22086 0.94608 0.89286 0.96044 1.21887 0.95991 1.03206 0.95327 1.21567 1.01134 0.96764 0.96226 1.21741 0.94863 0.97736 1.00859 1.21798 0.95858 0.99553 0.79560 0.92078 1.21302 0.98760 0.93543 0.80726 1.44554 1.09756 1.78762 1.02388 1.21487 0.91549 0.97705 0.93655 1.18526 0.94658 1.11183 1.12451 0.95272 1.26078 0.96262 1.00789 0.98785 1.69919 1.25522 1.42006 1.23466 0.85848 0.76735 0.80553 0.78728 1.20673 1.16936 1.23872 0.73531 0.85208 0.83083 0.82928 0.83688 0.87073 0.84511 0.89455 0.86891 0.87527 0.92578 0.91357 0.92011 0.95050 0.92467 0.91796 0.95767 0.93606 0.94184 0.94883 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 19.25 74.32 1.43 -2.85 16 2 C -0.18 -5.05 11.80 30.02 0.35 -4.69 16 3 C 0.00 -0.12 5.72 -21.41 -0.12 -0.25 16 4 C -0.11 -2.68 9.75 22.52 0.22 -2.46 16 5 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 6 C -0.11 -2.00 10.04 22.32 0.22 -1.78 16 7 C -0.12 -2.33 9.67 22.23 0.21 -2.11 16 8 C -0.06 -1.41 4.41 -19.61 -0.09 -1.49 16 9 C -0.09 -1.97 3.74 29.10 0.11 -1.86 16 10 C 0.51 15.55 7.59 87.66 0.67 16.21 16 11 O -0.56 -22.91 11.44 -3.04 -0.03 -22.95 16 12 N -0.61 -17.64 2.97 -795.03 -2.36 -20.00 16 13 C 0.10 1.87 6.33 86.36 0.55 2.41 16 14 C -0.13 -2.53 6.08 30.67 0.19 -2.34 16 15 C -0.12 -3.37 5.88 30.62 0.18 -3.19 16 16 C -0.11 -4.52 4.55 30.67 0.14 -4.38 16 17 C 0.14 5.22 3.19 44.97 0.14 5.37 16 18 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 19 C 0.18 8.41 3.70 86.38 0.32 8.73 16 20 N -0.63 -32.34 2.49 -726.95 -1.81 -34.15 16 21 C 0.10 4.56 8.39 127.77 1.07 5.63 16 22 C -0.24 -14.25 7.90 84.03 0.66 -13.59 16 23 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 24 C -0.02 -1.47 5.02 84.86 0.43 -1.04 16 25 N -0.96 -62.11 13.97 21.65 0.30 -61.81 16 26 Si 0.95 47.15 23.72 68.60 1.63 48.78 16 27 H -0.28 -13.33 6.79 99.48 0.68 -12.65 16 28 H -0.25 -11.20 6.13 99.48 0.61 -10.59 16 29 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 30 H 0.25 4.19 7.80 -4.41 -0.03 4.16 16 31 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.11 2.06 6.62 -2.39 -0.02 2.05 16 36 H 0.14 1.81 8.02 -2.39 -0.02 1.79 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.35 5.96 -2.39 -0.01 1.34 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 2.76 5.63 -2.39 -0.01 2.74 16 45 H 0.06 2.96 6.29 -2.39 -0.02 2.94 16 46 H 0.02 1.28 7.02 -2.39 -0.02 1.26 16 47 H 0.05 2.20 4.78 -2.38 -0.01 2.19 16 48 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.03 1.37 6.68 -2.39 -0.02 1.36 16 50 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -81.12 390.20 5.43 -75.70 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.79 Total: 20.20 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 6.91 Total: -5.77 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -3.87 Total: -115.96 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.03 Total: -22.95 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.63 Total: 48.78 kcal Total: -81.12 5.43 -75.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.544 kcal (2) G-P(sol) polarization free energy of solvation -81.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds