Wall clock time and date at job start Sat Apr 11 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46976 * 2 1 4 4 C 1.34777 * 119.99449 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99842 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47123 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47078 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99947 * 359.72481 * 8 7 6 10 10 N 1.34782 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00082 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.28285 * 35.68551 * 11 10 8 13 13 C 1.54255 * 110.32887 * 273.55330 * 11 10 8 14 14 C 1.54377 * 105.06013 * 241.10657 * 13 11 10 15 15 N 1.48560 * 104.59781 * 23.84855 * 14 13 11 16 16 C 1.46901 * 111.00345 * 200.96000 * 15 14 13 17 17 C 1.50696 * 109.47264 * 176.49137 * 16 15 14 18 18 O 1.21290 * 120.00250 * 6.06325 * 17 16 15 19 19 N 1.34777 * 119.99925 * 186.06155 * 17 16 15 20 20 C 1.37092 * 119.99610 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00473 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99818 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00203 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99800 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47091 * 90.00200 * 24 22 20 26 26 H 1.48502 * 109.47053 * 209.99865 * 24 22 20 27 27 H 1.48494 * 109.47382 * 330.00070 * 24 22 20 28 28 C 1.48554 * 104.22039 * 320.52055 * 15 14 13 29 29 H 1.08997 * 109.46653 * 59.99924 * 1 2 3 30 30 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47021 * 300.00664 * 1 2 3 32 32 H 1.08996 * 109.46591 * 239.99443 * 2 1 3 33 33 H 1.08997 * 109.46653 * 120.00075 * 2 1 3 34 34 H 0.96996 * 120.00421 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.47252 * 59.99583 * 6 4 3 36 36 H 1.09006 * 109.47086 * 299.99391 * 6 4 3 37 37 H 1.08996 * 109.47412 * 59.99663 * 7 6 4 38 38 H 1.08998 * 109.47434 * 299.99512 * 7 6 4 39 39 H 0.97005 * 120.00157 * 0.02562 * 10 8 7 40 40 H 1.09007 * 110.32121 * 359.97438 * 13 11 10 41 41 H 1.08997 * 110.32363 * 122.20908 * 13 11 10 42 42 H 1.09002 * 110.41431 * 142.63477 * 14 13 11 43 43 H 1.09004 * 110.41193 * 264.95001 * 14 13 11 44 44 H 1.09001 * 109.47235 * 296.49338 * 16 15 14 45 45 H 1.09000 * 109.46485 * 56.49299 * 16 15 14 46 46 H 0.96998 * 119.99922 * 0.02562 * 19 17 16 47 47 H 0.97001 * 119.99905 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.41256 * 280.69910 * 28 15 14 49 49 H 1.09007 * 110.41285 * 158.25862 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7055 0.0015 6 6 3.8459 3.0482 0.0011 7 6 5.3758 3.0481 0.0010 8 6 5.8782 4.4689 0.0009 9 8 5.0901 5.3908 -0.0041 10 7 7.2033 4.7152 0.0013 11 6 7.6917 6.0964 0.0007 12 1 7.0345 6.7298 0.5965 13 6 7.7865 6.6306 -1.4432 14 6 9.2790 6.9670 -1.6494 15 7 9.9943 6.1143 -0.6655 16 6 11.3324 6.6490 -0.3798 17 6 11.9926 5.8092 0.6831 18 8 11.4540 4.7966 1.0774 19 7 13.1817 6.1834 1.1955 20 6 13.7826 5.4191 2.1620 21 1 13.3029 4.5174 2.5132 22 6 15.0082 5.8051 2.6908 23 7 15.5840 5.0728 3.6176 24 14 15.8375 7.3651 2.0840 25 1 15.3976 8.5148 2.9147 26 1 17.3112 7.2148 2.1876 27 1 15.4628 7.6060 0.6674 28 6 9.1350 6.1550 0.5456 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5618 0.8910 36 1 3.4829 3.5623 -0.8890 37 1 5.7391 2.5346 -0.8892 38 1 5.7393 2.5340 0.8907 39 1 7.8337 3.9779 0.0013 40 1 7.4700 5.8650 -2.1517 41 1 7.1772 7.5274 -1.5558 42 1 9.5882 6.7177 -2.6644 43 1 9.4626 8.0219 -1.4453 44 1 11.9347 6.6252 -1.2880 45 1 11.2452 7.6772 -0.0285 46 1 13.6123 6.9935 0.8804 47 1 16.4398 5.3421 3.9864 48 1 9.2964 7.0822 1.0953 49 1 9.3358 5.2941 1.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713080810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:27 Heat of formation + Delta-G solvation = -105.517655 kcal Electronic energy + Delta-G solvation = -28894.495290 eV Core-core repulsion = 24663.417099 eV Total energy + Delta-G solvation = -4231.078191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.37115 -39.80855 -38.89738 -37.59762 -35.69905 -34.38249 -33.89031 -33.15805 -31.73321 -31.19043 -30.69832 -28.52247 -26.91795 -25.68599 -24.03895 -23.06292 -21.22905 -21.20257 -20.53447 -20.17424 -19.37103 -18.28164 -17.90127 -16.64007 -16.45716 -16.39298 -16.24559 -15.74812 -15.50272 -15.37844 -15.18011 -14.82728 -14.41370 -14.16497 -13.86533 -13.64797 -13.40309 -13.16383 -13.03241 -12.88802 -12.56044 -12.43357 -12.31309 -12.23089 -12.16411 -11.96196 -11.91133 -11.77404 -11.42076 -11.40174 -11.26980 -11.00988 -10.85287 -10.61293 -10.15079 -9.99950 -9.87861 -9.57654 -9.46158 -9.09240 -8.61206 -8.23798 -8.14827 -6.33499 -3.85035 2.35248 2.59546 2.73040 3.00728 3.04701 3.13434 3.27602 3.70118 3.98642 4.08298 4.32051 4.50998 4.53836 4.59521 4.62170 4.73753 4.83278 4.87748 4.92555 4.97115 5.11485 5.19889 5.32750 5.35089 5.38395 5.43754 5.44692 5.55934 5.57376 5.59212 5.67532 5.69834 5.71094 5.81860 5.87476 5.91132 6.04054 6.05639 6.29640 6.54013 6.96981 7.05403 7.10446 7.53742 7.55547 7.89430 8.11541 8.19692 8.57069 8.92423 9.39647 9.79594 10.79476 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.001780 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.915041 B =15723.146659 C =16886.702511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.735 5.735 4 C 0.512 3.488 5 O -0.539 6.539 6 C -0.123 4.123 7 C -0.127 4.127 8 C 0.514 3.486 9 O -0.553 6.553 10 N -0.712 5.712 11 C 0.141 3.859 12 H 0.092 0.908 13 C -0.130 4.130 14 C 0.028 3.972 15 N -0.485 5.485 16 C 0.031 3.969 17 C 0.451 3.549 18 O -0.562 6.562 19 N -0.589 5.589 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.026 3.974 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.052 0.948 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.024 0.374 -10.625 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.388 5.388 4 C 0.298 3.702 5 O -0.415 6.415 6 C -0.163 4.163 7 C -0.167 4.167 8 C 0.301 3.699 9 O -0.432 6.432 10 N -0.364 5.364 11 C 0.036 3.964 12 H 0.110 0.890 13 C -0.169 4.169 14 C -0.100 4.100 15 N -0.210 5.210 16 C -0.100 4.100 17 C 0.237 3.763 18 O -0.444 6.444 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.102 4.102 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.246 0.754 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.085 -0.929 -10.392 28.095 hybrid contribution 0.895 2.120 -0.113 2.304 sum -25.191 1.191 -10.505 27.319 Atomic orbital electron populations 1.22009 0.94425 1.03294 1.02559 1.21303 0.94236 0.83084 1.02501 1.46080 1.07324 1.08992 1.76436 1.20804 0.82113 0.91809 0.75427 1.90736 1.55210 1.46646 1.48949 1.21350 0.95959 0.93138 1.05854 1.21371 0.95065 0.94072 1.06224 1.20625 0.82444 0.91310 0.75502 1.90672 1.55417 1.46576 1.50533 1.46120 1.06949 1.09070 1.74231 1.21700 0.95251 0.83081 0.96379 0.89007 1.22723 0.95753 1.01476 0.96998 1.23198 0.93486 0.95431 0.97874 1.65206 1.00629 1.46873 1.08249 1.22117 0.91706 0.96477 0.99747 1.19596 0.83055 0.88001 0.85687 1.90522 1.64257 1.26730 1.62844 1.42211 1.19093 1.24360 1.37215 1.19426 1.02727 1.07837 1.13416 0.86238 1.25038 0.96542 0.98005 0.96506 1.69620 1.17494 1.38054 1.26831 0.86681 0.80224 0.83525 0.79010 1.19669 1.20143 1.19487 1.23522 0.89704 1.03459 0.93553 0.91954 0.90764 0.91918 0.91489 0.91454 0.76414 0.88044 0.88106 0.88010 0.87902 0.75366 0.90590 0.90857 0.90015 0.93827 0.88844 0.93222 0.79715 0.91589 0.92984 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.03 37.16 0.37 -0.19 16 2 C 0.11 0.69 6.39 -4.04 -0.03 0.67 16 3 N -0.73 -4.81 5.56 -60.29 -0.33 -5.14 16 4 C 0.51 4.82 7.83 -10.99 -0.09 4.74 16 5 O -0.54 -7.24 15.98 5.55 0.09 -7.15 16 6 C -0.12 -1.01 4.99 -27.89 -0.14 -1.15 16 7 C -0.13 -1.22 4.99 -27.88 -0.14 -1.36 16 8 C 0.51 6.08 7.82 -10.98 -0.09 5.99 16 9 O -0.55 -7.91 15.68 5.56 0.09 -7.83 16 10 N -0.71 -8.53 5.00 -52.47 -0.26 -8.80 16 11 C 0.14 1.78 3.36 -66.55 -0.22 1.56 16 12 H 0.09 1.19 7.65 -51.93 -0.40 0.79 16 13 C -0.13 -1.46 6.78 -25.35 -0.17 -1.64 16 14 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 15 N -0.49 -7.33 5.18 -231.41 -1.20 -8.53 16 16 C 0.03 0.51 5.39 -4.98 -0.03 0.48 16 17 C 0.45 9.88 7.43 -10.99 -0.08 9.80 16 18 O -0.56 -14.28 14.01 5.55 0.08 -14.21 16 19 N -0.59 -13.73 5.09 -10.96 -0.06 -13.78 16 20 C -0.31 -8.49 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 24 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 C 0.03 0.38 5.19 -2.18 -0.01 0.37 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.40 1.54 8.47 -40.82 -0.35 1.20 16 35 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.10 0.75 8.10 -51.93 -0.42 0.32 16 37 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.41 4.83 8.56 -40.82 -0.35 4.48 16 40 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.46 7.92 -51.93 -0.41 0.05 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.05 0.70 7.98 -51.93 -0.41 0.29 16 46 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 49 H 0.11 2.01 6.38 -51.93 -0.33 1.68 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -35.41 403.12 -8.28 -43.69 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -7.93 Total: 13.96 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -0.88 Total: 11.99 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -1.08 Total: -60.96 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: 0.25 Total: -29.18 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.41 -8.28 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713080810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.828 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds