Wall clock time and date at job start Sat Apr 11 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46976 * 2 1 4 4 C 1.34777 * 119.99449 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99842 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47123 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47078 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99947 * 359.72481 * 8 7 6 10 10 N 1.34782 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00082 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.28285 * 35.68551 * 11 10 8 13 13 C 1.54255 * 110.32887 * 273.55330 * 11 10 8 14 14 C 1.54377 * 105.06013 * 241.10657 * 13 11 10 15 15 N 1.48560 * 104.59781 * 23.84855 * 14 13 11 16 16 C 1.46901 * 111.00345 * 200.96000 * 15 14 13 17 17 C 1.50696 * 109.47264 * 176.49137 * 16 15 14 18 18 O 1.21290 * 120.00250 * 6.06325 * 17 16 15 19 19 N 1.34777 * 119.99925 * 186.06155 * 17 16 15 20 20 C 1.37092 * 119.99610 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00473 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99818 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00203 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99800 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47091 * 90.00200 * 24 22 20 26 26 H 1.48502 * 109.47053 * 209.99865 * 24 22 20 27 27 H 1.48494 * 109.47382 * 330.00070 * 24 22 20 28 28 C 1.48554 * 104.22039 * 320.52055 * 15 14 13 29 29 H 1.08997 * 109.46653 * 59.99924 * 1 2 3 30 30 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47021 * 300.00664 * 1 2 3 32 32 H 1.08996 * 109.46591 * 239.99443 * 2 1 3 33 33 H 1.08997 * 109.46653 * 120.00075 * 2 1 3 34 34 H 0.96996 * 120.00421 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.47252 * 59.99583 * 6 4 3 36 36 H 1.09006 * 109.47086 * 299.99391 * 6 4 3 37 37 H 1.08996 * 109.47412 * 59.99663 * 7 6 4 38 38 H 1.08998 * 109.47434 * 299.99512 * 7 6 4 39 39 H 0.97005 * 120.00157 * 0.02562 * 10 8 7 40 40 H 1.09007 * 110.32121 * 359.97438 * 13 11 10 41 41 H 1.08997 * 110.32363 * 122.20908 * 13 11 10 42 42 H 1.09002 * 110.41431 * 142.63477 * 14 13 11 43 43 H 1.09004 * 110.41193 * 264.95001 * 14 13 11 44 44 H 1.09001 * 109.47235 * 296.49338 * 16 15 14 45 45 H 1.09000 * 109.46485 * 56.49299 * 16 15 14 46 46 H 0.96998 * 119.99922 * 0.02562 * 19 17 16 47 47 H 0.97001 * 119.99905 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.41256 * 280.69910 * 28 15 14 49 49 H 1.09007 * 110.41285 * 158.25862 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7055 0.0015 6 6 3.8459 3.0482 0.0011 7 6 5.3758 3.0481 0.0010 8 6 5.8782 4.4689 0.0009 9 8 5.0901 5.3908 -0.0041 10 7 7.2033 4.7152 0.0013 11 6 7.6917 6.0964 0.0007 12 1 7.0345 6.7298 0.5965 13 6 7.7865 6.6306 -1.4432 14 6 9.2790 6.9670 -1.6494 15 7 9.9943 6.1143 -0.6655 16 6 11.3324 6.6490 -0.3798 17 6 11.9926 5.8092 0.6831 18 8 11.4540 4.7966 1.0774 19 7 13.1817 6.1834 1.1955 20 6 13.7826 5.4191 2.1620 21 1 13.3029 4.5174 2.5132 22 6 15.0082 5.8051 2.6908 23 7 15.5840 5.0728 3.6176 24 14 15.8375 7.3651 2.0840 25 1 15.3976 8.5148 2.9147 26 1 17.3112 7.2148 2.1876 27 1 15.4628 7.6060 0.6674 28 6 9.1350 6.1550 0.5456 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5618 0.8910 36 1 3.4829 3.5623 -0.8890 37 1 5.7391 2.5346 -0.8892 38 1 5.7393 2.5340 0.8907 39 1 7.8337 3.9779 0.0013 40 1 7.4700 5.8650 -2.1517 41 1 7.1772 7.5274 -1.5558 42 1 9.5882 6.7177 -2.6644 43 1 9.4626 8.0219 -1.4453 44 1 11.9347 6.6252 -1.2880 45 1 11.2452 7.6772 -0.0285 46 1 13.6123 6.9935 0.8804 47 1 16.4398 5.3421 3.9864 48 1 9.2964 7.0822 1.0953 49 1 9.3358 5.2941 1.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713080810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:26 Heat of formation + Delta-G solvation = -136.115741 kcal Electronic energy + Delta-G solvation = -28895.822122 eV Core-core repulsion = 24663.417099 eV Total energy + Delta-G solvation = -4232.405024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.32579 -40.77452 -40.24681 -38.97204 -36.33585 -36.02087 -35.29676 -33.98497 -33.73942 -32.21753 -31.33402 -29.54484 -28.36827 -26.59893 -25.68697 -23.59840 -22.34955 -22.09651 -21.44467 -21.19867 -21.06332 -20.14169 -18.73078 -17.83280 -17.47226 -17.15999 -17.13548 -16.95201 -16.77136 -16.47512 -16.36131 -16.12477 -15.35174 -15.28335 -15.09576 -14.86664 -14.72113 -14.38484 -14.23007 -13.96248 -13.83113 -13.39008 -13.32729 -13.23155 -13.04925 -12.92428 -12.81060 -12.69327 -12.48670 -12.40952 -12.38211 -12.17712 -12.16939 -11.97024 -11.81823 -11.46649 -10.95744 -10.88320 -10.36187 -10.23063 -10.11318 -10.06823 -9.38074 -8.40406 -6.00929 1.30623 1.35620 1.44700 1.60506 1.63099 1.96676 2.01276 2.23470 2.45325 2.68296 3.16136 3.22051 3.50010 3.61397 3.83266 3.96334 4.07286 4.11221 4.15726 4.21796 4.22188 4.23012 4.32982 4.37012 4.44057 4.51831 4.56993 4.64728 4.74281 4.82426 4.85509 4.94361 4.96189 4.97683 5.05440 5.07145 5.20082 5.26225 5.47378 5.51806 5.53921 5.82522 5.92016 6.03804 6.51636 6.56370 6.60673 6.89735 7.20674 7.24511 7.41154 7.98085 8.77150 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.001780 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.915041 B =15723.146659 C =16886.702511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 N -0.721 5.721 4 C 0.510 3.490 5 O -0.585 6.585 6 C -0.114 4.114 7 C -0.122 4.122 8 C 0.519 3.481 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.145 3.855 12 H 0.089 0.911 13 C -0.122 4.122 14 C 0.034 3.966 15 N -0.506 5.506 16 C 0.043 3.957 17 C 0.450 3.550 18 O -0.604 6.604 19 N -0.592 5.592 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.029 3.971 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.417 0.583 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.054 0.946 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.153 3.560 -13.170 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.374 5.374 4 C 0.298 3.702 5 O -0.466 6.466 6 C -0.154 4.154 7 C -0.163 4.163 8 C 0.306 3.694 9 O -0.456 6.456 10 N -0.364 5.364 11 C 0.039 3.961 12 H 0.107 0.893 13 C -0.161 4.161 14 C -0.094 4.094 15 N -0.231 5.231 16 C -0.089 4.089 17 C 0.238 3.762 18 O -0.488 6.488 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.074 0.926 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.154 1.154 28 C -0.099 4.099 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.246 0.754 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.278 2.281 -12.966 30.289 hybrid contribution 1.124 0.996 0.722 1.666 sum -26.154 3.277 -12.244 29.064 Atomic orbital electron populations 1.21956 0.91896 1.04133 1.03357 1.21376 0.96247 0.82549 1.01358 1.46022 1.06737 1.09888 1.74762 1.21010 0.82670 0.91715 0.74795 1.90719 1.56512 1.47931 1.51418 1.21303 0.94776 0.92495 1.06868 1.21336 0.96237 0.92501 1.06180 1.20877 0.82009 0.91798 0.74670 1.90655 1.55804 1.47394 1.51724 1.46166 1.07179 1.09020 1.74064 1.21643 0.93608 0.83345 0.97460 0.89290 1.22685 0.96046 1.01993 0.95415 1.23266 0.92815 0.95927 0.97356 1.65166 1.00500 1.48632 1.08782 1.22059 0.92077 0.96327 0.98405 1.20845 0.82099 0.87689 0.85569 1.90520 1.65123 1.28941 1.64182 1.42037 1.19762 1.24746 1.36862 1.18993 1.03701 1.07162 1.15696 0.92603 1.26096 0.96660 1.02507 0.96089 1.69806 1.18277 1.40880 1.28628 0.85382 0.78213 0.77483 0.80553 1.18259 1.20182 1.15362 1.23354 0.91311 1.01816 0.93445 0.91021 0.89953 0.91163 0.92575 0.92788 0.74598 0.87186 0.86786 0.87708 0.88321 0.75433 0.90787 0.89221 0.88570 0.91759 0.86041 0.90051 0.77569 0.91227 0.92773 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.03 71.99 0.72 -0.10 16 2 C 0.11 1.30 6.39 86.38 0.55 1.85 16 3 N -0.72 -8.81 5.56 -463.06 -2.57 -11.39 16 4 C 0.51 9.52 7.83 87.66 0.69 10.20 16 5 O -0.59 -16.19 15.98 -3.04 -0.05 -16.24 16 6 C -0.11 -1.78 4.99 29.85 0.15 -1.63 16 7 C -0.12 -2.35 4.99 29.85 0.15 -2.20 16 8 C 0.52 12.05 7.82 87.66 0.69 12.73 16 9 O -0.58 -15.87 15.68 -3.03 -0.05 -15.91 16 10 N -0.71 -17.08 5.00 -438.29 -2.19 -19.28 16 11 C 0.15 3.51 3.36 45.89 0.15 3.67 16 12 H 0.09 2.22 7.65 -2.39 -0.02 2.20 16 13 C -0.12 -2.42 6.78 31.49 0.21 -2.21 16 14 C 0.03 0.66 6.49 86.45 0.56 1.22 16 15 N -0.51 -14.25 5.18 -886.05 -4.59 -18.85 16 16 C 0.04 1.25 5.39 85.56 0.46 1.71 16 17 C 0.45 19.66 7.43 87.66 0.65 20.31 16 18 O -0.60 -32.05 14.01 -3.06 -0.04 -32.10 16 19 N -0.59 -27.33 5.09 -306.99 -1.56 -28.89 16 20 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 21 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 22 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.94 -56.27 13.96 21.66 0.30 -55.97 16 24 Si 0.96 38.42 27.74 68.60 1.90 40.32 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 28 C 0.03 0.86 5.19 86.45 0.45 1.30 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.42 2.48 8.47 -92.71 -0.79 1.69 16 35 H 0.11 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.11 1.50 8.10 -2.38 -0.02 1.48 16 37 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 38 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 39 H 0.41 10.00 8.56 -92.70 -0.79 9.20 16 40 H 0.07 1.51 7.95 -2.38 -0.02 1.50 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.04 7.92 -2.38 -0.02 1.02 16 44 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.08 1.93 7.98 -2.39 -0.02 1.91 16 46 H 0.39 14.83 5.76 -92.71 -0.53 14.29 16 47 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 48 H 0.05 1.53 7.95 -2.39 -0.02 1.51 16 49 H 0.07 2.79 6.38 -2.38 -0.02 2.77 16 Total: -1.00 -83.06 403.12 -3.28 -86.34 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -1.18 Total: 43.51 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 6.75 Total: 28.45 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -10.62 Total: -134.37 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -0.14 Total: -64.25 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.90 Total: 40.32 kcal Total: -83.06 -3.28 -86.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713080810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.774 kcal (2) G-P(sol) polarization free energy of solvation -83.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds