Wall clock time and date at job start Sat Apr 11 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.34779 * 120.00488 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99575 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00378 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47078 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47078 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00255 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00068 * 179.97438 * 8 7 6 11 11 C 1.46510 * 120.00060 * 179.97438 * 10 8 7 12 12 H 1.08991 * 110.27217 * 327.09015 * 11 10 8 13 13 C 1.54594 * 110.30508 * 89.28553 * 11 10 8 14 14 C 1.54945 * 102.92349 * 96.96194 * 13 11 10 15 15 N 1.48536 * 103.22617 * 37.40873 * 14 13 11 16 16 C 1.46902 * 111.00027 * 200.28467 * 15 14 13 17 17 C 1.50699 * 109.46675 * 287.39504 * 16 15 14 18 18 O 1.21294 * 120.00153 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99659 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99771 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99948 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99714 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99899 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99796 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47093 * 89.99947 * 24 22 20 26 26 H 1.48499 * 109.47352 * 210.00114 * 24 22 20 27 27 H 1.48503 * 109.47108 * 330.00421 * 24 22 20 28 28 C 1.47904 * 105.81915 * 320.79822 * 15 14 13 29 29 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 34 34 H 0.97003 * 119.99956 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47512 * 300.00202 * 6 4 3 36 36 H 1.09002 * 109.46959 * 59.99990 * 6 4 3 37 37 H 1.09004 * 109.47261 * 300.00035 * 7 6 4 38 38 H 1.09002 * 109.47153 * 60.00207 * 7 6 4 39 39 H 0.97002 * 120.00695 * 0.02562 * 10 8 7 40 40 H 1.09001 * 110.72242 * 215.31329 * 13 11 10 41 41 H 1.08996 * 110.73149 * 338.60236 * 13 11 10 42 42 H 1.09000 * 110.66476 * 278.97797 * 14 13 11 43 43 H 1.08991 * 110.81375 * 155.91275 * 14 13 11 44 44 H 1.09001 * 109.46846 * 47.39234 * 16 15 14 45 45 H 1.08999 * 109.46843 * 167.39608 * 16 15 14 46 46 H 0.96999 * 120.00094 * 0.02562 * 19 17 16 47 47 H 0.97008 * 119.99806 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.91613 * 265.97502 * 28 15 14 49 49 H 1.08999 * 110.08008 * 144.77953 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1316 0.7057 -0.0005 6 6 3.8457 3.0484 0.0001 7 6 5.3757 3.0484 -0.0001 8 6 5.8780 4.4692 -0.0001 9 8 5.0899 5.3910 0.0004 10 7 7.2030 4.7155 0.0003 11 6 7.6914 6.0968 -0.0003 12 1 7.0083 6.7386 -0.5565 13 6 7.8526 6.6095 1.4492 14 6 9.3599 6.3863 1.7301 15 7 9.9999 6.7137 0.4303 16 6 11.3400 6.1188 0.3388 17 6 12.2854 6.8695 1.2408 18 8 11.8824 7.8074 1.8959 19 7 13.5785 6.4979 1.3204 20 6 14.4385 7.1805 2.1415 21 1 14.0797 8.0156 2.7248 22 6 15.7718 6.7978 2.2232 23 7 16.2085 5.7820 1.5130 24 14 16.9437 7.7283 3.3413 25 1 16.9404 7.1059 4.6897 26 1 18.3154 7.6751 2.7749 27 1 16.5069 9.1436 3.4484 28 6 9.1038 6.1640 -0.6101 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.3880 2.1185 0.0004 35 1 3.4820 3.5628 -0.8893 36 1 3.4828 3.5617 0.8906 37 1 5.7391 2.5341 0.8897 38 1 5.7390 2.5349 -0.8903 39 1 7.8335 3.9783 0.0003 40 1 7.6008 7.6680 1.5141 41 1 7.2414 6.0237 2.1358 42 1 9.5509 5.3483 2.0023 43 1 9.7118 7.0588 2.5123 44 1 11.2957 5.0743 0.6473 45 1 11.6947 6.1790 -0.6902 46 1 13.9007 5.7477 0.7968 47 1 17.1392 5.5146 1.5703 48 1 9.4337 5.1647 -0.8941 49 1 9.1005 6.8160 -1.4837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713080811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:29 Heat of formation + Delta-G solvation = -140.796909 kcal Electronic energy + Delta-G solvation = -28573.050811 eV Core-core repulsion = 24340.442796 eV Total energy + Delta-G solvation = -4232.608014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34739 -40.72522 -40.16283 -38.98118 -36.32741 -35.99276 -35.26400 -33.97685 -33.27863 -32.16656 -31.32296 -29.66748 -28.22159 -26.60722 -25.80912 -23.60229 -22.65083 -22.00038 -21.44769 -21.10466 -20.85800 -19.85974 -18.71199 -17.97584 -17.39968 -17.29554 -17.15152 -16.89100 -16.57097 -16.42120 -16.14946 -16.06233 -15.73274 -15.37035 -15.08098 -14.81748 -14.66047 -14.33184 -14.14869 -13.84331 -13.59683 -13.43483 -13.38338 -13.05868 -12.95000 -12.90569 -12.77406 -12.69262 -12.44767 -12.39583 -12.37921 -12.30478 -12.15092 -12.11262 -11.90909 -11.47160 -10.94896 -10.90821 -10.30472 -10.11786 -10.08909 -9.98694 -9.30902 -8.45242 -5.93487 1.38418 1.42178 1.54714 1.61247 1.62859 1.96551 2.08352 2.29272 2.41002 2.86590 3.21726 3.38684 3.53525 3.60211 3.77357 3.96799 4.07209 4.09568 4.13130 4.21716 4.22945 4.26736 4.34566 4.37353 4.46569 4.51909 4.54985 4.65904 4.70959 4.83717 4.86771 4.94565 4.97670 5.02065 5.04612 5.05599 5.13210 5.26486 5.42184 5.46950 5.48764 5.85078 5.96087 6.10192 6.50410 6.54727 6.63080 7.15295 7.21410 7.24971 7.59099 8.15657 8.72159 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.001528 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.291407 B =18314.864450 C =18896.640814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.723 5.723 4 C 0.512 3.488 5 O -0.584 6.584 6 C -0.118 4.118 7 C -0.119 4.119 8 C 0.518 3.482 9 O -0.575 6.575 10 N -0.714 5.714 11 C 0.144 3.856 12 H 0.096 0.904 13 C -0.121 4.121 14 C 0.043 3.957 15 N -0.515 5.515 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.274 1.274 28 C 0.034 3.966 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.075 0.925 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.161 -12.454 -7.010 32.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.376 5.376 4 C 0.299 3.701 5 O -0.465 6.465 6 C -0.158 4.158 7 C -0.160 4.160 8 C 0.306 3.694 9 O -0.455 6.455 10 N -0.366 5.366 11 C 0.038 3.962 12 H 0.114 0.886 13 C -0.160 4.160 14 C -0.085 4.085 15 N -0.240 5.240 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.094 4.094 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.249 0.751 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.130 0.870 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.182 -11.371 -6.674 32.023 hybrid contribution 1.135 -0.752 0.517 1.457 sum -28.047 -12.123 -6.157 31.169 Atomic orbital electron populations 1.21961 0.92102 1.04102 1.03304 1.21365 0.96110 0.82556 1.01413 1.46056 1.06892 1.09874 1.74737 1.20993 0.82597 0.91717 0.74763 1.90708 1.56407 1.47866 1.51477 1.21327 0.95311 0.92445 1.06753 1.21339 0.95852 0.92181 1.06586 1.20963 0.82085 0.91851 0.74482 1.90699 1.56005 1.47649 1.51134 1.46132 1.07326 1.08405 1.74755 1.21614 0.95115 0.83471 0.96000 0.88601 1.22807 0.94490 1.02076 0.96644 1.23162 0.94024 0.98910 0.92374 1.64411 1.00609 1.55437 1.03520 1.21938 0.89446 0.96299 1.00468 1.20815 0.83235 0.86827 0.86317 1.90489 1.77468 1.32783 1.49521 1.41919 1.07734 1.30983 1.40649 1.19642 0.90811 1.13767 1.21997 0.90499 1.25984 0.98533 0.97471 0.99121 1.69668 1.17657 1.27371 1.41447 0.84962 0.77257 0.78269 0.78057 1.19696 1.19529 1.19905 1.23213 0.90154 1.00614 0.95395 0.91217 0.89984 0.91122 0.92653 0.92518 0.74682 0.87063 0.87357 0.87669 0.87241 0.75068 0.90700 0.90313 0.93468 0.92323 0.90751 0.86993 0.77012 0.91360 0.90735 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 10.03 71.98 0.72 0.16 16 2 C 0.11 1.05 6.39 86.38 0.55 1.60 16 3 N -0.72 -7.01 5.56 -463.06 -2.57 -9.58 16 4 C 0.51 7.74 7.83 87.66 0.69 8.42 16 5 O -0.58 -13.62 15.98 -3.05 -0.05 -13.67 16 6 C -0.12 -1.41 4.99 29.85 0.15 -1.26 16 7 C -0.12 -1.60 4.99 29.85 0.15 -1.45 16 8 C 0.52 9.27 7.83 87.66 0.69 9.96 16 9 O -0.58 -14.18 15.63 -3.03 -0.05 -14.23 16 10 N -0.71 -11.58 5.06 -438.38 -2.22 -13.80 16 11 C 0.14 2.97 3.34 45.87 0.15 3.12 16 12 H 0.10 2.14 7.56 -2.39 -0.02 2.12 16 13 C -0.12 -2.99 6.78 31.80 0.22 -2.78 16 14 C 0.04 1.32 5.94 86.65 0.51 1.83 16 15 N -0.51 -16.02 4.91 -887.54 -4.35 -20.37 16 16 C 0.05 1.66 5.19 85.56 0.44 2.10 16 17 C 0.44 20.91 7.61 87.66 0.67 21.58 16 18 O -0.62 -34.38 14.64 -3.07 -0.04 -34.43 16 19 N -0.58 -29.41 5.29 -306.98 -1.62 -31.03 16 20 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.03 0.72 6.44 86.44 0.56 1.28 16 29 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.07 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.42 1.64 8.47 -92.71 -0.79 0.86 16 35 H 0.11 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.11 1.38 8.10 -2.38 -0.02 1.36 16 38 H 0.11 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.41 4.90 8.33 -92.71 -0.77 4.13 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 42 H 0.05 1.33 7.81 -2.39 -0.02 1.31 16 43 H 0.06 2.28 7.10 -2.39 -0.02 2.26 16 44 H 0.07 2.13 7.83 -2.39 -0.02 2.11 16 45 H 0.11 3.22 8.08 -2.39 -0.02 3.20 16 46 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 47 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 48 H 0.07 1.24 7.26 -2.38 -0.02 1.23 16 49 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -78.37 406.77 -3.12 -81.49 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -1.30 Total: 33.45 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 6.78 Total: 26.28 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -10.48 Total: -124.04 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -0.14 Total: -62.33 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.37 -3.12 -81.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713080811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.308 kcal (2) G-P(sol) polarization free energy of solvation -78.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds