Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99805 * 2 1 4 4 N 1.34778 * 119.99839 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99933 * 180.02562 * 4 2 1 6 6 H 1.09009 * 109.46917 * 34.99603 * 5 4 2 7 7 C 1.52994 * 109.47139 * 154.99415 * 5 4 2 8 8 C 1.50700 * 109.47695 * 295.00256 * 7 5 4 9 9 O 1.21286 * 119.99573 * 359.97438 * 8 7 5 10 10 N 1.34771 * 120.00275 * 180.02562 * 8 7 5 11 11 C 1.46924 * 120.63114 * 354.65065 * 10 8 7 12 12 C 1.53190 * 108.77977 * 233.88750 * 11 10 8 13 13 C 1.53043 * 109.31210 * 305.36691 * 12 11 10 14 14 C 1.53044 * 109.53919 * 61.36208 * 13 12 11 15 15 C 1.46932 * 120.62917 * 174.94027 * 10 8 7 16 16 H 1.09003 * 109.58129 * 245.89960 * 15 10 8 17 17 C 1.52994 * 109.58888 * 6.18026 * 15 10 8 18 18 N 1.46491 * 109.47265 * 181.41087 * 17 15 10 19 19 C 1.36936 * 120.00388 * 185.48152 * 18 17 15 20 20 H 1.08007 * 119.99900 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00636 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99765 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00389 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.46959 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47138 * 119.99993 * 23 21 19 26 26 H 1.48499 * 109.47045 * 239.99697 * 23 21 19 27 27 C 1.50694 * 109.47304 * 274.99893 * 5 4 2 28 28 N 1.34778 * 120.00471 * 179.97438 * 27 5 4 29 29 O 1.21287 * 119.99711 * 359.97438 * 27 5 4 30 30 H 1.09000 * 109.47318 * 240.00132 * 1 2 3 31 31 H 1.08999 * 109.47388 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46903 * 120.00145 * 1 2 3 33 33 H 0.97000 * 120.00197 * 359.97438 * 4 2 1 34 34 H 1.09008 * 109.47237 * 175.00099 * 7 5 4 35 35 H 1.08999 * 109.47344 * 55.00496 * 7 5 4 36 36 H 1.08998 * 109.58866 * 353.67967 * 11 10 8 37 37 H 1.09005 * 109.58391 * 114.09940 * 11 10 8 38 38 H 1.08994 * 109.49998 * 185.41393 * 12 11 10 39 39 H 1.08998 * 109.51989 * 65.33324 * 12 11 10 40 40 H 1.09000 * 109.45975 * 301.34576 * 13 12 11 41 41 H 1.08998 * 109.44692 * 181.37978 * 13 12 11 42 42 H 1.08999 * 109.49891 * 178.68362 * 14 13 12 43 43 H 1.09002 * 109.49221 * 58.58726 * 14 13 12 44 44 H 1.09003 * 109.47285 * 301.41355 * 17 15 10 45 45 H 1.08996 * 109.47119 * 61.40705 * 17 15 10 46 46 H 0.96999 * 120.00061 * 5.48563 * 18 17 15 47 47 H 0.97002 * 120.00238 * 180.02562 * 22 21 19 48 48 H 0.97000 * 119.99555 * 0.02562 * 28 27 5 49 49 H 0.96996 * 120.00057 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0090 -0.3257 0.5902 7 6 4.1556 -2.4749 0.6091 8 6 3.7563 -2.5423 2.0607 9 8 3.1265 -1.6336 2.5592 10 7 4.1001 -3.6119 2.8052 11 6 4.7607 -4.7711 2.1900 12 6 3.9623 -6.0328 2.5323 13 6 3.8016 -6.1337 4.0509 14 6 3.0277 -4.9178 4.5656 15 6 3.8155 -3.6434 4.2464 16 1 4.7522 -3.6436 4.8038 17 6 2.9889 -2.4154 4.6330 18 7 2.7353 -2.4320 6.0757 19 6 1.9172 -1.4887 6.6380 20 1 1.4586 -0.7328 6.0177 21 6 1.6773 -1.5040 8.0051 22 7 2.2358 -2.4255 8.7610 23 14 0.5608 -0.2177 8.7720 24 1 0.0616 0.6980 7.7150 25 1 -0.5891 -0.8890 9.4296 26 1 1.3227 0.5608 9.7813 27 6 4.1487 -1.0425 -1.4150 28 7 5.4739 -1.0204 -1.6598 29 8 3.3609 -0.9620 -2.3337 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6959 -2.0073 -0.0005 34 1 5.2420 -2.5139 0.5289 35 1 3.7212 -3.3189 0.0733 36 1 4.7933 -4.6415 1.1082 37 1 5.7745 -4.8632 2.5798 38 1 4.4931 -6.9105 2.1636 39 1 2.9789 -5.9795 2.0652 40 1 4.7855 -6.1625 4.5191 41 1 3.2549 -7.0436 4.2984 42 1 2.8933 -5.0019 5.6440 43 1 2.0531 -4.8745 4.0794 44 1 3.5376 -1.5108 4.3709 45 1 2.0400 -2.4328 4.0970 46 1 3.1469 -3.1110 6.6327 47 1 2.0679 -2.4365 9.7163 48 1 6.1039 -1.0851 -0.9252 49 1 5.7976 -0.9405 -2.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713266537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -85.427668 kcal Electronic energy + Delta-G solvation = -31467.230040 eV Core-core repulsion = 27237.023017 eV Total energy + Delta-G solvation = -4230.207024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94012 -39.98398 -38.75824 -37.43136 -35.22031 -34.59107 -34.00946 -32.95021 -32.15924 -31.29327 -29.78211 -29.13605 -26.55553 -25.28484 -24.37994 -23.04246 -21.46853 -21.04092 -20.81379 -20.38890 -19.08467 -18.07684 -17.37466 -17.05606 -16.86483 -16.47371 -16.04438 -15.78805 -15.21022 -14.96337 -14.85067 -14.55421 -14.36117 -14.21618 -13.84440 -13.74652 -13.58025 -13.28417 -13.24765 -12.97752 -12.76461 -12.60699 -12.22731 -12.14118 -11.97973 -11.89323 -11.62491 -11.06204 -10.97728 -10.86319 -10.71933 -10.59442 -10.50114 -10.36946 -10.00688 -9.95005 -9.84613 -9.67479 -9.15555 -8.90429 -8.80584 -8.38474 -6.77275 -5.67608 -2.93887 2.29289 2.62459 2.67023 2.92645 2.98999 3.45616 3.49998 3.56326 3.59408 4.21550 4.27604 4.57874 4.68757 4.71753 4.73631 4.80625 4.88083 4.95375 4.98961 5.16267 5.28682 5.30736 5.33470 5.43319 5.45362 5.53255 5.66626 5.72971 5.76128 5.87622 5.92852 5.94575 6.18850 6.18971 6.24758 6.25472 6.46348 6.51171 6.70274 6.97514 7.07718 7.24437 7.43223 7.49278 7.84224 7.94368 8.26005 8.28778 8.53568 9.63221 10.21758 10.56236 11.55963 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.003773 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.635356 B = 7418.834737 C = 9575.257464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.528 3.472 3 O -0.547 6.547 4 N -0.700 5.700 5 C 0.146 3.854 6 H 0.125 0.875 7 C -0.148 4.148 8 C 0.503 3.497 9 O -0.497 6.497 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.126 4.126 15 C 0.140 3.860 16 H 0.070 0.930 17 C 0.165 3.835 18 N -0.738 5.738 19 C -0.223 4.223 20 H 0.070 0.930 21 C -0.019 4.019 22 N -0.939 5.939 23 Si 0.904 3.096 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.509 3.491 28 N -0.854 5.854 29 O -0.531 6.531 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.403 0.597 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.034 0.966 46 H 0.378 0.622 47 H 0.252 0.748 48 H 0.402 0.598 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 -8.913 -21.450 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.316 3.684 3 O -0.423 6.423 4 N -0.351 5.351 5 C 0.035 3.965 6 H 0.143 0.857 7 C -0.189 4.189 8 C 0.289 3.711 9 O -0.371 6.371 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.159 4.159 14 C -0.164 4.164 15 C 0.037 3.963 16 H 0.088 0.912 17 C 0.039 3.961 18 N -0.384 5.384 19 C -0.355 4.355 20 H 0.088 0.912 21 C -0.214 4.214 22 N -0.589 5.589 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.292 3.708 28 N -0.419 5.419 29 O -0.406 6.406 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.237 0.763 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.211 0.789 47 H 0.062 0.938 48 H 0.230 0.770 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.169 -7.434 -21.647 23.984 hybrid contribution -0.044 -0.230 0.685 0.724 sum 7.124 -7.663 -20.962 23.428 Atomic orbital electron populations 1.21877 0.91445 1.05549 1.04284 1.20658 0.90623 0.83066 0.74059 1.90692 1.70814 1.31429 1.49405 1.45384 1.04574 1.09355 1.75820 1.20477 0.83327 1.00174 0.92490 0.85731 1.22037 1.03576 0.98019 0.95246 1.20246 0.80677 0.82626 0.87549 1.90930 1.37498 1.37573 1.71080 1.48148 1.59964 1.16678 1.09275 1.21735 0.96351 0.85646 0.97888 1.21914 1.00793 0.96994 0.97552 1.21555 1.00894 0.98765 0.94665 1.21927 0.98666 0.92967 1.02833 1.21625 0.98934 0.97543 0.78170 0.91169 1.21263 0.96651 0.92878 0.85320 1.42571 1.57744 1.36005 1.02060 1.19271 1.19435 1.05889 0.90899 0.91178 1.24689 1.01277 0.99144 0.96244 1.69664 1.48512 1.35989 1.04693 0.86138 0.80147 0.81022 0.79134 1.20552 1.22032 1.22005 1.21156 0.82626 0.75177 0.91891 1.43862 1.07314 1.77920 1.12841 1.90739 1.55380 1.48403 1.46043 0.88977 0.89018 0.89546 0.76288 0.87347 0.87962 0.90190 0.91246 0.91036 0.91565 0.91886 0.91832 0.89573 0.91765 0.93919 0.94764 0.78870 0.93802 0.76984 0.76731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.32 36.01 0.37 -1.49 16 2 C 0.53 7.77 7.77 -10.99 -0.09 7.68 16 3 O -0.55 -10.33 16.75 5.56 0.09 -10.24 16 4 N -0.70 -8.42 3.75 -54.94 -0.21 -8.63 16 5 C 0.15 1.57 1.94 -69.09 -0.13 1.43 16 6 H 0.13 1.64 7.39 -51.92 -0.38 1.25 16 7 C -0.15 -1.13 3.59 -27.89 -0.10 -1.23 16 8 C 0.50 6.21 7.47 -10.99 -0.08 6.12 16 9 O -0.50 -8.57 10.76 5.55 0.06 -8.51 16 10 N -0.61 -7.09 2.97 -165.22 -0.49 -7.58 16 11 C 0.11 0.80 6.33 -3.71 -0.02 0.78 16 12 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 13 C -0.12 -1.26 5.88 -26.69 -0.16 -1.42 16 14 C -0.13 -1.83 5.15 -26.61 -0.14 -1.97 16 15 C 0.14 2.20 3.01 -67.60 -0.20 2.00 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 17 C 0.17 3.52 4.10 -4.05 -0.02 3.50 16 18 N -0.74 -19.08 5.29 -59.92 -0.32 -19.39 16 19 C -0.22 -6.51 9.99 -15.06 -0.15 -6.66 16 20 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 21 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 22 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 23 Si 0.90 23.24 29.55 -169.99 -5.02 18.22 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 C 0.51 5.42 7.46 -10.99 -0.08 5.34 16 28 N -0.85 -5.23 8.74 31.22 0.27 -4.96 16 29 O -0.53 -7.83 17.16 5.55 0.10 -7.73 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 34 H 0.11 0.48 7.40 -51.92 -0.38 0.10 16 35 H 0.10 0.57 7.47 -51.93 -0.39 0.19 16 36 H 0.08 0.38 5.96 -51.93 -0.31 0.07 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.48 7.29 -51.93 -0.38 1.10 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.04 1.01 6.35 -51.93 -0.33 0.68 16 45 H 0.03 0.79 7.12 -51.93 -0.37 0.42 16 46 H 0.38 10.01 6.89 -40.82 -0.28 9.73 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.40 1.33 8.19 -40.82 -0.33 1.00 16 49 H 0.40 2.04 8.93 -40.82 -0.36 1.68 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -40.23 393.06 -7.57 -47.81 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.65 Total: 10.87 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -1.06 Total: 12.23 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.02 Total: -68.56 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.25 Total: -26.48 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.23 -7.57 -47.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713266537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.620 kcal (2) G-P(sol) polarization free energy of solvation -40.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds