Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46891 * 109.47143 * 2 1 4 4 C 1.46904 * 111.00283 * 77.51744 * 3 2 1 5 5 C 1.52999 * 109.47349 * 201.34628 * 4 3 2 6 6 N 1.46500 * 109.46994 * 174.35376 * 5 4 3 7 7 C 1.34770 * 120.00282 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99971 * 4.81621 * 7 6 5 9 9 C 1.50704 * 120.00637 * 184.81797 * 7 6 5 10 10 C 1.50694 * 115.54818 * 67.36036 * 9 7 6 11 11 O 1.21281 * 120.00235 * 243.85665 * 10 9 7 12 12 N 1.34783 * 120.00190 * 63.86023 * 10 9 7 13 13 C 1.46496 * 120.00328 * 185.20981 * 12 10 9 14 14 C 1.52998 * 117.49690 * 281.69814 * 9 7 6 15 15 C 1.52994 * 117.49988 * 213.03831 * 9 7 6 16 16 C 1.46902 * 111.00161 * 201.47030 * 3 2 1 17 17 C 1.50706 * 109.46756 * 66.04784 * 16 3 2 18 18 O 1.21294 * 119.99979 * 0.02562 * 17 16 3 19 19 N 1.34774 * 119.99637 * 179.97438 * 17 16 3 20 20 C 1.37096 * 119.99495 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00311 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99669 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00450 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00006 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47009 * 89.99689 * 24 22 20 26 26 H 1.48502 * 109.47551 * 209.99995 * 24 22 20 27 27 H 1.48505 * 109.47310 * 329.99910 * 24 22 20 28 28 H 1.08993 * 109.46776 * 62.80494 * 1 2 3 29 29 H 1.09003 * 109.47158 * 182.80170 * 1 2 3 30 30 H 1.08994 * 109.47006 * 302.80426 * 1 2 3 31 31 H 1.08995 * 109.47104 * 239.99695 * 2 1 3 32 32 H 1.09001 * 109.46735 * 120.00119 * 2 1 3 33 33 H 1.09006 * 109.46826 * 81.34446 * 4 3 2 34 34 H 1.09001 * 109.47079 * 321.35439 * 4 3 2 35 35 H 1.08991 * 109.47436 * 294.35215 * 5 4 3 36 36 H 1.08992 * 109.46859 * 54.35968 * 5 4 3 37 37 H 0.97005 * 120.00269 * 0.02562 * 6 5 4 38 38 H 0.97002 * 119.99197 * 5.20627 * 12 10 9 39 39 H 1.08995 * 109.47216 * 300.00151 * 13 12 10 40 40 H 1.09007 * 109.47015 * 59.99676 * 13 12 10 41 41 H 1.08993 * 109.47162 * 179.97438 * 13 12 10 42 42 H 1.09005 * 117.49804 * 359.97438 * 14 9 7 43 43 H 1.08994 * 117.49966 * 145.01623 * 14 9 7 44 44 H 1.09007 * 117.49614 * 214.97706 * 15 9 7 45 45 H 1.08997 * 117.50104 * 359.97053 * 15 9 7 46 46 H 1.09000 * 109.47523 * 186.04330 * 16 3 2 47 47 H 1.08998 * 109.47345 * 306.04865 * 16 3 2 48 48 H 0.96993 * 120.00120 * 0.02562 * 19 17 16 49 49 H 0.97001 * 120.00517 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.9158 1.9801 1.3390 5 6 1.9126 3.5055 1.2203 6 7 1.6739 4.0974 2.5390 7 6 1.6282 5.4371 2.6780 8 8 1.6972 6.1510 1.6999 9 6 1.4914 6.0484 4.0487 10 6 2.6750 5.8649 4.9632 11 8 2.5581 5.2219 5.9849 12 7 3.8636 6.4154 4.6458 13 6 5.0413 6.1432 5.4735 14 6 0.1003 6.0505 4.6856 15 6 0.7056 7.3560 4.1639 16 6 3.3985 1.4559 -0.5020 17 6 3.4237 1.0667 -1.9577 18 8 2.3943 0.7608 -2.5216 19 7 4.5899 1.0595 -2.6332 20 6 4.6129 0.7050 -3.9573 21 1 3.6966 0.4311 -4.4590 22 6 5.8153 0.6971 -4.6536 23 7 6.9305 1.0289 -4.0429 24 14 5.8468 0.2133 -6.4576 25 1 5.6541 1.4226 -7.2978 26 1 7.1553 -0.4103 -6.7802 27 1 4.7558 -0.7569 -6.7291 28 1 -0.3632 0.4696 -0.9140 29 1 -0.3633 -1.0265 0.0502 30 1 -0.3633 0.5567 0.8637 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.7659 1.6645 1.9439 34 1 0.9909 1.6505 1.8124 35 1 2.8768 3.8424 0.8400 36 1 1.1235 3.8149 0.5350 37 1 1.5487 3.5251 3.3121 38 1 3.9391 6.9918 3.8693 39 1 4.8565 6.4847 6.4919 40 1 5.2408 5.0715 5.4803 41 1 5.9030 6.6702 5.0638 42 1 -0.7161 5.6102 4.1130 43 1 0.0412 5.9196 5.7661 44 1 1.0446 8.0836 4.9015 45 1 0.2879 7.7746 3.2483 46 1 3.7736 2.4733 -0.3914 47 1 4.0282 0.7725 0.0677 48 1 5.4130 1.3045 -2.1823 49 1 7.7698 1.0237 -4.5291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713494324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -73.201769 kcal Electronic energy + Delta-G solvation = -29669.360216 eV Core-core repulsion = 25439.683347 eV Total energy + Delta-G solvation = -4229.676869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01715 -39.37485 -38.75803 -37.02432 -36.38425 -35.02673 -34.82478 -33.82217 -31.36675 -30.87425 -29.41509 -27.99832 -26.45311 -24.90843 -24.10927 -22.93447 -22.68756 -21.69128 -21.03092 -20.04352 -19.17936 -18.60779 -17.86552 -16.62599 -16.51626 -16.33457 -16.01255 -15.65140 -15.52936 -15.16795 -14.89316 -14.72834 -14.54808 -14.17883 -13.93534 -13.73035 -13.65186 -13.39583 -13.20257 -13.09810 -12.69559 -12.43219 -12.19607 -12.09239 -11.77261 -11.61780 -11.55635 -11.48367 -11.45949 -11.13054 -11.06565 -10.82631 -10.55852 -10.47433 -10.39061 -10.21460 -9.99409 -9.58279 -9.46425 -9.26752 -8.43923 -7.99714 -7.92418 -6.41304 -3.81964 1.94959 2.24017 2.62475 2.71097 3.18244 3.26838 3.32076 3.33519 3.89708 3.97934 4.17384 4.21215 4.28579 4.35099 4.42018 4.77988 4.83822 4.96922 5.08459 5.10368 5.13001 5.21741 5.25194 5.35095 5.36239 5.40089 5.41521 5.57264 5.62998 5.77407 5.80317 5.84673 5.87118 5.91221 5.94988 6.08529 6.19071 6.27496 6.44534 6.57142 6.96805 7.17511 7.24365 7.33887 7.55685 7.70116 7.89524 8.06656 8.62049 9.18589 9.54836 10.06454 10.76514 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.002256 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.124468 B =12406.641737 C =13480.440006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 N -0.511 5.511 4 C 0.044 3.956 5 C 0.121 3.879 6 N -0.719 5.719 7 C 0.556 3.444 8 O -0.523 6.523 9 C -0.202 4.202 10 C 0.559 3.441 11 O -0.528 6.528 12 N -0.727 5.727 13 C 0.086 3.914 14 C -0.128 4.128 15 C -0.127 4.127 16 C 0.042 3.958 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.408 0.592 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 9.739 21.185 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.339 3.661 8 O -0.398 6.398 9 C -0.208 4.208 10 C 0.343 3.657 11 O -0.404 6.404 12 N -0.378 5.378 13 C -0.057 4.057 14 C -0.166 4.166 15 C -0.165 4.165 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.242 0.758 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.077 9.807 20.405 24.037 hybrid contribution 1.395 -0.538 -0.085 1.498 sum -6.681 9.268 20.321 23.312 Atomic orbital electron populations 1.21685 0.95208 1.00589 1.02108 1.22155 0.96097 0.87795 1.01311 1.61421 1.21038 1.20005 1.21139 1.22252 1.01553 0.93563 0.91149 1.21417 1.02914 0.92614 0.83277 1.45897 1.72826 1.06396 1.11940 1.18955 0.76691 0.82322 0.88127 1.90769 1.48815 1.60947 1.39257 1.21504 0.95206 1.07946 0.96158 1.19063 0.82789 0.78796 0.85040 1.90727 1.83899 1.40246 1.25533 1.45758 1.08997 1.51101 1.31907 1.21613 0.86550 1.02037 0.95549 1.23114 0.91364 0.99897 1.02187 1.23101 0.99634 0.89627 1.04124 1.21950 0.89087 1.01866 0.95979 1.19692 0.84724 0.84932 0.87762 1.90513 1.32574 1.53170 1.69644 1.41868 1.07676 1.59702 1.10889 1.19689 0.95368 1.42145 0.85518 0.87903 1.25254 0.94766 0.97501 1.00432 1.69607 0.98699 1.48596 1.37483 0.85867 0.77553 0.78825 0.82098 1.20385 1.20970 1.19435 0.91454 0.92953 0.93725 0.88550 0.95888 0.94210 0.90138 0.91143 0.89807 0.76372 0.75797 0.91930 0.91942 0.90210 0.87155 0.86719 0.87413 0.86561 0.89394 0.93383 0.77543 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.07 37.16 0.37 -1.52 16 2 C 0.05 0.84 5.15 -3.82 -0.02 0.82 16 3 N -0.51 -8.14 4.08 -236.06 -0.96 -9.10 16 4 C 0.04 0.52 4.92 -3.82 -0.02 0.50 16 5 C 0.12 1.50 5.73 -4.04 -0.02 1.47 16 6 N -0.72 -7.43 5.55 -60.30 -0.33 -7.77 16 7 C 0.56 6.32 7.05 -10.99 -0.08 6.24 16 8 O -0.52 -7.76 16.75 5.55 0.09 -7.67 16 9 C -0.20 -1.81 2.28 -156.82 -0.36 -2.17 16 10 C 0.56 5.54 7.08 -10.99 -0.08 5.46 16 11 O -0.53 -6.68 16.67 5.56 0.09 -6.59 16 12 N -0.73 -5.78 5.71 -67.08 -0.38 -6.17 16 13 C 0.09 0.56 10.71 59.84 0.64 1.20 16 14 C -0.13 -0.90 9.76 -26.70 -0.26 -1.16 16 15 C -0.13 -0.89 9.77 -26.70 -0.26 -1.16 16 16 C 0.04 0.74 5.26 -4.97 -0.03 0.72 16 17 C 0.44 10.33 7.28 -10.98 -0.08 10.25 16 18 O -0.58 -15.20 14.15 5.55 0.08 -15.12 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.53 6.82 -51.93 -0.35 0.17 16 31 H 0.10 1.85 5.88 -51.93 -0.31 1.55 16 32 H 0.02 0.31 7.97 -51.93 -0.41 -0.10 16 33 H 0.04 0.44 7.98 -51.93 -0.41 0.03 16 34 H 0.08 0.84 6.57 -51.93 -0.34 0.50 16 35 H 0.07 0.96 7.05 -51.93 -0.37 0.59 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.40 3.41 8.48 -40.82 -0.35 3.06 16 38 H 0.41 2.77 8.83 -40.82 -0.36 2.41 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.11 0.78 7.97 -51.93 -0.41 0.37 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.12 0.86 8.03 -51.93 -0.42 0.44 16 46 H 0.09 1.43 6.83 -51.93 -0.35 1.07 16 47 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 411.37 15.07 6.20 6.20 Total: -1.00 -34.41 411.37 -7.72 -42.14 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -7.72 Total: 13.39 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -0.43 Total: 12.75 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -1.01 Total: -61.15 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: 0.26 Total: -29.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.41 -7.72 -42.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713494324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.065 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds