Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 119.99923 * 2 1 4 4 N 1.34779 * 119.99921 * 180.02562 * 2 1 3 5 5 C 1.46506 * 119.99842 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.46860 * 35.00448 * 5 4 2 7 7 C 1.52999 * 109.46660 * 155.00433 * 5 4 2 8 8 C 1.50707 * 109.47161 * 294.99721 * 7 5 4 9 9 O 1.21286 * 119.99413 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00226 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99818 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46789 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46856 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.91988 * 51.09207 * 13 12 11 15 15 C 1.55157 * 111.00230 * 174.99947 * 13 12 11 16 16 C 1.54321 * 103.10033 * 153.66249 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.36934 * 125.65046 * 178.97751 * 17 16 15 19 19 H 1.08001 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00199 * 359.97423 * 18 17 16 21 21 N 1.31622 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47000 * 60.00290 * 22 20 18 24 24 H 1.48504 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47305 * 299.99926 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 27 27 C 1.50697 * 109.47180 * 274.99929 * 5 4 2 28 28 N 1.34769 * 119.99945 * 180.02562 * 27 5 4 29 29 O 1.21288 * 120.00129 * 0.02562 * 27 5 4 30 30 H 1.08998 * 109.47222 * 239.99784 * 1 2 3 31 31 H 1.09003 * 109.47304 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47263 * 119.99321 * 1 2 3 33 33 H 0.96995 * 119.99907 * 0.02562 * 4 2 1 34 34 H 1.08996 * 109.46711 * 175.00485 * 7 5 4 35 35 H 1.08993 * 109.47445 * 55.00040 * 7 5 4 36 36 H 0.96993 * 119.99531 * 0.02562 * 10 8 7 37 37 H 1.08993 * 109.47247 * 59.99881 * 11 10 8 38 38 H 1.09003 * 109.47089 * 299.99860 * 11 10 8 39 39 H 1.08995 * 109.46788 * 59.99852 * 12 11 10 40 40 H 1.08993 * 109.46922 * 299.99764 * 12 11 10 41 41 H 1.09002 * 110.72219 * 35.20946 * 15 13 12 42 42 H 1.09003 * 110.71618 * 272.11558 * 15 13 12 43 43 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 44 44 H 1.09003 * 109.88132 * 218.14177 * 16 15 13 45 45 H 0.96993 * 119.99930 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.36190 * 142.96411 * 26 17 16 47 47 H 1.08998 * 110.36491 * 265.18090 * 26 17 16 48 48 H 0.97001 * 120.00273 * 359.97438 * 28 27 5 49 49 H 0.97000 * 120.00271 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0094 -0.3256 0.5885 7 6 4.1560 -2.4748 0.6080 8 6 3.7579 -2.5416 2.0600 9 8 3.1277 -1.6330 2.5583 10 7 4.1021 -3.6109 2.8046 11 6 3.7146 -3.6760 4.2159 12 6 4.2259 -4.9830 4.8254 13 6 3.8206 -5.0513 6.2991 14 1 2.7545 -4.8586 6.4189 15 6 4.2122 -6.4179 6.9207 16 6 4.3810 -6.0855 8.4182 17 7 4.6396 -4.6418 8.5185 18 6 4.8270 -3.9434 9.6814 19 1 5.0120 -2.8798 9.6487 20 6 4.7794 -4.6024 10.9022 21 7 4.5535 -5.8985 10.9420 22 14 5.0344 -3.6496 12.4886 23 1 3.9924 -2.5984 12.6075 24 1 4.9355 -4.5769 13.6443 25 1 6.3774 -3.0162 12.4751 26 6 4.6645 -4.0705 7.1596 27 6 4.1477 -1.0431 -1.4166 28 7 5.4726 -1.0221 -1.6625 29 8 3.3592 -0.9621 -2.3347 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 1.6958 -2.0072 -0.0013 34 1 5.2423 -2.5137 0.5270 35 1 3.7212 -3.3189 0.0728 36 1 4.6064 -4.3373 2.4061 37 1 2.6283 -3.6376 4.2965 38 1 4.1487 -2.8316 4.7512 39 1 5.3122 -5.0209 4.7447 40 1 3.7922 -5.8276 4.2901 41 1 5.1495 -6.7796 6.4979 42 1 3.4174 -7.1496 6.7753 43 1 3.4686 -6.3372 8.9590 44 1 5.2215 -6.6445 8.8296 45 1 4.5205 -6.3591 11.7950 46 1 4.2124 -3.0787 7.1568 47 1 5.6878 -4.0213 6.7876 48 1 6.1032 -1.0865 -0.9283 49 1 5.7956 -0.9418 -2.5736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713737718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -98.313145 kcal Electronic energy + Delta-G solvation = -29350.258230 eV Core-core repulsion = 25119.492450 eV Total energy + Delta-G solvation = -4230.765780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94372 -39.63785 -38.97293 -37.83384 -35.60585 -35.03090 -34.18112 -33.10319 -31.91201 -30.87745 -29.50802 -28.90612 -26.88439 -25.58202 -24.46477 -22.36163 -21.48040 -20.86622 -20.61945 -20.02078 -19.52249 -18.42394 -17.59663 -17.18647 -16.89533 -16.81110 -16.30990 -15.90024 -15.67188 -15.19614 -15.05711 -14.92922 -14.58008 -14.26658 -14.03066 -13.77627 -13.64408 -13.51369 -13.07140 -12.61919 -12.51029 -12.40181 -12.25649 -12.10607 -11.99735 -11.84176 -11.58086 -11.16050 -10.88841 -10.76225 -10.70485 -10.27684 -10.17171 -10.14798 -10.09030 -9.99934 -9.87783 -9.79039 -9.62582 -9.35899 -9.24043 -8.58962 -6.81941 -5.70333 -3.03592 2.11695 2.31623 2.43433 2.74693 2.85108 3.29650 3.41370 3.45518 3.46688 3.97906 4.25838 4.49457 4.50929 4.55138 4.71444 4.78818 4.87107 5.02229 5.05017 5.17896 5.21072 5.23295 5.46611 5.55408 5.61094 5.62650 5.71861 5.82102 5.96550 6.00482 6.04497 6.15229 6.26343 6.30977 6.36272 6.52740 6.56775 6.70888 6.81755 6.94587 7.18263 7.24090 7.57023 7.63112 7.77876 7.83361 7.93617 8.04056 8.27535 9.23614 9.84066 10.50222 11.41419 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.001837 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.891959 B =15240.651364 C =15780.373614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.526 3.474 3 O -0.546 6.546 4 N -0.701 5.701 5 C 0.145 3.855 6 H 0.125 0.875 7 C -0.149 4.149 8 C 0.507 3.493 9 O -0.523 6.523 10 N -0.727 5.727 11 C 0.118 3.882 12 C -0.115 4.115 13 C -0.101 4.101 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.177 3.823 17 N -0.607 5.607 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.140 3.860 27 C 0.508 3.492 28 N -0.853 5.853 29 O -0.530 6.530 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.403 0.597 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.252 0.748 46 H 0.036 0.964 47 H 0.017 0.983 48 H 0.402 0.598 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 1.609 -26.727 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.314 3.686 3 O -0.423 6.423 4 N -0.353 5.353 5 C 0.035 3.965 6 H 0.143 0.857 7 C -0.190 4.190 8 C 0.292 3.708 9 O -0.398 6.398 10 N -0.379 5.379 11 C -0.005 4.005 12 C -0.154 4.154 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.014 3.986 27 C 0.290 3.710 28 N -0.418 5.418 29 O -0.405 6.405 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.238 0.762 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.233 0.767 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.034 0.966 48 H 0.231 0.769 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.475 3.040 -26.549 26.764 hybrid contribution 0.768 -0.464 0.711 1.145 sum -0.707 2.576 -25.838 25.976 Atomic orbital electron populations 1.21876 0.91357 1.05596 1.04286 1.20690 0.90660 0.83084 0.74157 1.90703 1.70812 1.31414 1.49334 1.45410 1.04633 1.09376 1.75832 1.20473 0.83262 1.00038 0.92723 0.85748 1.21965 1.04076 0.98480 0.94442 1.20282 0.80187 0.82490 0.87871 1.90808 1.38888 1.36975 1.73160 1.46070 1.57824 1.21830 1.12186 1.21520 1.00416 0.99236 0.79351 1.21736 1.01364 0.95780 0.96497 1.22349 1.00271 0.97738 0.91739 0.90599 1.22899 0.99769 0.95495 0.99511 1.21128 1.00336 0.84667 0.88663 1.44473 1.84399 1.04315 1.00124 1.19026 1.41816 0.91805 0.82991 0.90536 1.24807 1.02155 0.95979 0.97631 1.69957 1.55850 1.07074 1.24234 0.86195 0.78021 0.78585 0.82945 1.21150 1.21615 1.21186 1.21688 0.95656 0.94995 0.86252 1.21099 0.82710 0.75354 0.91791 1.43860 1.07249 1.77749 1.12976 1.90751 1.55320 1.48348 1.46035 0.89163 0.88953 0.89382 0.76248 0.86916 0.87544 0.76658 0.91372 0.90864 0.91276 0.91660 0.92618 0.92389 0.93721 0.94109 0.93755 0.94524 0.96566 0.76942 0.76580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.32 36.00 0.37 -0.95 16 2 C 0.53 6.17 7.77 -10.99 -0.09 6.09 16 3 O -0.55 -8.76 16.75 5.55 0.09 -8.66 16 4 N -0.70 -6.40 3.75 -54.93 -0.21 -6.60 16 5 C 0.15 1.18 1.94 -69.08 -0.13 1.04 16 6 H 0.12 1.27 7.39 -51.93 -0.38 0.89 16 7 C -0.15 -0.69 5.19 -27.88 -0.14 -0.83 16 8 C 0.51 4.31 7.69 -10.98 -0.08 4.23 16 9 O -0.52 -6.94 15.35 5.55 0.09 -6.85 16 10 N -0.73 -5.43 5.56 -60.29 -0.33 -5.77 16 11 C 0.12 1.25 5.58 -4.04 -0.02 1.23 16 12 C -0.12 -1.25 4.85 -26.73 -0.13 -1.38 16 13 C -0.10 -1.58 3.02 -88.21 -0.27 -1.85 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.14 -2.41 6.40 -24.90 -0.16 -2.57 16 16 C 0.18 4.23 5.37 -3.07 -0.02 4.21 16 17 N -0.61 -15.46 3.40 -169.76 -0.58 -16.03 16 18 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.14 2.79 6.23 -2.26 -0.01 2.78 16 27 C 0.51 4.37 7.46 -10.99 -0.08 4.29 16 28 N -0.85 -3.71 8.73 31.22 0.27 -3.44 16 29 O -0.53 -6.82 17.16 5.55 0.10 -6.73 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.40 2.66 8.60 -40.82 -0.35 2.31 16 34 H 0.11 0.17 7.43 -51.93 -0.39 -0.21 16 35 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.40 1.74 8.47 -40.82 -0.35 1.40 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.94 7.77 -51.93 -0.40 0.53 16 39 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.89 8.04 -51.93 -0.42 0.48 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.04 1.19 7.38 -51.93 -0.38 0.81 16 44 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.32 7.93 -51.93 -0.41 -0.09 16 48 H 0.40 0.58 8.19 -40.82 -0.33 0.25 16 49 H 0.40 1.45 8.93 -40.82 -0.36 1.08 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -40.25 404.46 -7.88 -48.13 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.93 Total: -0.08 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.02 Total: 9.37 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.27 Total: -58.47 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.27 Total: -22.25 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -40.25 -7.88 -48.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713737718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.181 kcal (2) G-P(sol) polarization free energy of solvation -40.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds