Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 119.99923 * 2 1 4 4 N 1.34779 * 119.99921 * 180.02562 * 2 1 3 5 5 C 1.46506 * 119.99842 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.46860 * 35.00448 * 5 4 2 7 7 C 1.52999 * 109.46660 * 155.00433 * 5 4 2 8 8 C 1.50707 * 109.47161 * 294.99721 * 7 5 4 9 9 O 1.21286 * 119.99413 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00226 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99818 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46789 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46856 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.91988 * 51.09207 * 13 12 11 15 15 C 1.55157 * 111.00230 * 174.99947 * 13 12 11 16 16 C 1.54321 * 103.10033 * 153.66249 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.36934 * 125.65046 * 178.97751 * 17 16 15 19 19 H 1.08001 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00199 * 359.97423 * 18 17 16 21 21 N 1.31622 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47000 * 60.00290 * 22 20 18 24 24 H 1.48504 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47305 * 299.99926 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 27 27 C 1.50697 * 109.47180 * 274.99929 * 5 4 2 28 28 N 1.34769 * 119.99945 * 180.02562 * 27 5 4 29 29 O 1.21288 * 120.00129 * 0.02562 * 27 5 4 30 30 H 1.08998 * 109.47222 * 239.99784 * 1 2 3 31 31 H 1.09003 * 109.47304 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47263 * 119.99321 * 1 2 3 33 33 H 0.96995 * 119.99907 * 0.02562 * 4 2 1 34 34 H 1.08996 * 109.46711 * 175.00485 * 7 5 4 35 35 H 1.08993 * 109.47445 * 55.00040 * 7 5 4 36 36 H 0.96993 * 119.99531 * 0.02562 * 10 8 7 37 37 H 1.08993 * 109.47247 * 59.99881 * 11 10 8 38 38 H 1.09003 * 109.47089 * 299.99860 * 11 10 8 39 39 H 1.08995 * 109.46788 * 59.99852 * 12 11 10 40 40 H 1.08993 * 109.46922 * 299.99764 * 12 11 10 41 41 H 1.09002 * 110.72219 * 35.20946 * 15 13 12 42 42 H 1.09003 * 110.71618 * 272.11558 * 15 13 12 43 43 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 44 44 H 1.09003 * 109.88132 * 218.14177 * 16 15 13 45 45 H 0.96993 * 119.99930 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.36190 * 142.96411 * 26 17 16 47 47 H 1.08998 * 110.36491 * 265.18090 * 26 17 16 48 48 H 0.97001 * 120.00273 * 359.97438 * 28 27 5 49 49 H 0.97000 * 120.00271 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0094 -0.3256 0.5885 7 6 4.1560 -2.4748 0.6080 8 6 3.7579 -2.5416 2.0600 9 8 3.1277 -1.6330 2.5583 10 7 4.1021 -3.6109 2.8046 11 6 3.7146 -3.6760 4.2159 12 6 4.2259 -4.9830 4.8254 13 6 3.8206 -5.0513 6.2991 14 1 2.7545 -4.8586 6.4189 15 6 4.2122 -6.4179 6.9207 16 6 4.3810 -6.0855 8.4182 17 7 4.6396 -4.6418 8.5185 18 6 4.8270 -3.9434 9.6814 19 1 5.0120 -2.8798 9.6487 20 6 4.7794 -4.6024 10.9022 21 7 4.5535 -5.8985 10.9420 22 14 5.0344 -3.6496 12.4886 23 1 3.9924 -2.5984 12.6075 24 1 4.9355 -4.5769 13.6443 25 1 6.3774 -3.0162 12.4751 26 6 4.6645 -4.0705 7.1596 27 6 4.1477 -1.0431 -1.4166 28 7 5.4726 -1.0221 -1.6625 29 8 3.3592 -0.9621 -2.3347 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 1.6958 -2.0072 -0.0013 34 1 5.2423 -2.5137 0.5270 35 1 3.7212 -3.3189 0.0728 36 1 4.6064 -4.3373 2.4061 37 1 2.6283 -3.6376 4.2965 38 1 4.1487 -2.8316 4.7512 39 1 5.3122 -5.0209 4.7447 40 1 3.7922 -5.8276 4.2901 41 1 5.1495 -6.7796 6.4979 42 1 3.4174 -7.1496 6.7753 43 1 3.4686 -6.3372 8.9590 44 1 5.2215 -6.6445 8.8296 45 1 4.5205 -6.3591 11.7950 46 1 4.2124 -3.0787 7.1568 47 1 5.6878 -4.0213 6.7876 48 1 6.1032 -1.0865 -0.9283 49 1 5.7956 -0.9418 -2.5736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713737718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = -133.358361 kcal Electronic energy + Delta-G solvation = -29351.777904 eV Core-core repulsion = 25119.492450 eV Total energy + Delta-G solvation = -4232.285455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64651 -40.40877 -39.78362 -39.33188 -36.56591 -35.89404 -34.80117 -34.69717 -32.82427 -32.18132 -30.76498 -29.97987 -28.20529 -26.81935 -25.83404 -23.49797 -22.21832 -21.83554 -21.63425 -21.31808 -20.73902 -19.02338 -18.85166 -18.25649 -17.88911 -17.53012 -17.00496 -16.88146 -16.60970 -16.52013 -16.15656 -15.96238 -15.68253 -15.49653 -15.18061 -14.83793 -14.50626 -14.32436 -14.12017 -13.85350 -13.71329 -13.54997 -13.29159 -13.12779 -13.04319 -12.96773 -12.77773 -12.68818 -12.60410 -12.20562 -12.04303 -11.78935 -11.53569 -11.48383 -11.35946 -11.28701 -11.01084 -10.87529 -10.69743 -10.67413 -10.12350 -9.99294 -8.88127 -7.85399 -5.20361 1.44042 1.47355 1.47469 1.53635 1.62933 1.69219 2.10140 2.19592 2.49229 2.72993 3.32187 3.44347 3.67952 3.75439 3.83837 3.94472 4.01666 4.06337 4.16225 4.21827 4.39334 4.41438 4.46142 4.51135 4.64024 4.65400 4.67156 4.73187 4.81518 4.95196 5.03748 5.04929 5.17056 5.21904 5.30098 5.34273 5.44861 5.52464 5.56573 5.72570 5.80886 5.86833 6.21615 6.38107 6.49775 6.64991 7.11555 7.23556 7.28988 7.35122 7.80070 8.43815 9.24625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.001837 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.891959 B =15240.651364 C =15780.373614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.602 6.602 4 N -0.693 5.693 5 C 0.141 3.859 6 H 0.100 0.900 7 C -0.133 4.133 8 C 0.506 3.494 9 O -0.576 6.576 10 N -0.711 5.711 11 C 0.124 3.876 12 C -0.098 4.098 13 C -0.085 4.085 14 H 0.069 0.931 15 C -0.122 4.122 16 C 0.180 3.820 17 N -0.632 5.632 18 C -0.244 4.244 19 H 0.078 0.922 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.133 3.867 27 C 0.509 3.491 28 N -0.830 5.830 29 O -0.578 6.578 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.416 0.584 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.420 0.580 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.005 0.995 44 H 0.003 0.997 45 H 0.247 0.753 46 H 0.030 0.970 47 H 0.026 0.974 48 H 0.419 0.581 49 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 0.313 -28.995 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.483 6.483 4 N -0.344 5.344 5 C 0.031 3.969 6 H 0.118 0.882 7 C -0.173 4.173 8 C 0.293 3.707 9 O -0.456 6.456 10 N -0.364 5.364 11 C 0.000 4.000 12 C -0.136 4.136 13 C -0.105 4.105 14 H 0.088 0.912 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.359 5.359 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.806 3.194 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.202 1.202 26 C 0.008 3.992 27 C 0.292 3.708 28 N -0.395 5.395 29 O -0.457 6.457 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.252 0.748 34 H 0.171 0.829 35 H 0.157 0.843 36 H 0.258 0.742 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.250 0.750 49 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.556 1.683 -28.857 28.911 hybrid contribution 0.563 -0.045 1.421 1.530 sum 0.008 1.638 -27.436 27.484 Atomic orbital electron populations 1.21891 0.88664 1.05869 1.06075 1.21450 0.92309 0.82970 0.73270 1.90663 1.72126 1.33320 1.52181 1.45419 1.05419 1.09294 1.74296 1.20542 0.82783 1.01141 0.92456 0.88241 1.21982 1.06546 0.97461 0.91323 1.20886 0.79023 0.81603 0.89174 1.90808 1.41360 1.38925 1.74465 1.45826 1.57505 1.22307 1.10762 1.21220 0.99580 0.98219 0.80988 1.21575 1.02333 0.96893 0.92808 1.22238 0.99138 0.94873 0.94288 0.91227 1.22758 1.01863 0.96935 0.94475 1.20947 0.96829 0.83814 0.92931 1.44841 1.84220 1.05245 1.01554 1.19421 1.41136 0.92276 0.84536 0.90410 1.25661 1.02641 0.96985 1.00848 1.70188 1.57029 1.08445 1.24368 0.85165 0.78237 0.77251 0.78775 1.20464 1.21868 1.20243 1.21930 0.96919 0.95731 0.84599 1.21127 0.83561 0.74912 0.91242 1.43675 1.06117 1.75606 1.14141 1.90734 1.56778 1.50980 1.47205 0.87584 0.89550 0.87091 0.74752 0.82943 0.84320 0.74234 0.92490 0.93533 0.89953 0.88336 0.90396 0.90047 0.97675 0.97872 0.94427 0.95194 0.95574 0.74955 0.75748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.32 71.23 0.74 -1.74 16 2 C 0.51 12.20 7.77 87.66 0.68 12.89 16 3 O -0.60 -20.31 16.75 -3.04 -0.05 -20.36 16 4 N -0.69 -12.14 3.75 -446.09 -1.67 -13.81 16 5 C 0.14 2.10 1.94 44.24 0.09 2.18 16 6 H 0.10 2.05 7.39 -2.39 -0.02 2.03 16 7 C -0.13 -0.74 5.19 29.85 0.15 -0.58 16 8 C 0.51 7.29 7.69 87.66 0.67 7.96 16 9 O -0.58 -14.92 15.35 -3.05 -0.05 -14.97 16 10 N -0.71 -7.97 5.56 -463.05 -2.57 -10.54 16 11 C 0.12 2.32 5.58 86.38 0.48 2.81 16 12 C -0.10 -1.71 4.85 30.60 0.15 -1.56 16 13 C -0.09 -2.49 3.02 -9.23 -0.03 -2.52 16 14 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 15 C -0.12 -3.99 6.40 31.78 0.20 -3.78 16 16 C 0.18 8.80 5.37 86.73 0.47 9.27 16 17 N -0.63 -32.81 3.40 -691.01 -2.35 -35.16 16 18 C -0.24 -14.05 10.28 84.03 0.86 -13.18 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 21 N -0.95 -58.06 10.31 21.65 0.22 -57.84 16 22 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.13 5.22 6.23 87.02 0.54 5.77 16 27 C 0.51 7.99 7.46 87.66 0.65 8.65 16 28 N -0.83 -5.16 8.73 -173.54 -1.52 -6.68 16 29 O -0.58 -14.54 17.16 -3.05 -0.05 -14.59 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.38 8.12 -2.39 -0.02 1.37 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.42 4.79 8.60 -92.71 -0.80 3.99 16 34 H 0.15 -0.34 7.43 -2.39 -0.02 -0.35 16 35 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.42 1.40 8.47 -92.71 -0.79 0.62 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.14 7.77 -2.39 -0.02 1.12 16 39 H 0.08 1.31 7.98 -2.39 -0.02 1.29 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.00 0.28 7.38 -2.39 -0.02 0.26 16 44 H 0.00 0.17 7.51 -2.39 -0.02 0.15 16 45 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.03 0.99 7.93 -2.39 -0.02 0.97 16 48 H 0.42 -0.16 8.19 -92.71 -0.76 -0.92 16 49 H 0.41 1.97 8.93 -92.71 -0.83 1.15 16 Total: -1.00 -95.73 404.46 -2.04 -97.77 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -2.16 Total: 4.94 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 6.13 Total: 22.62 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -7.88 Total: -124.03 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.15 Total: -49.91 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -95.73 -2.04 -97.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713737718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.584 kcal (2) G-P(sol) polarization free energy of solvation -95.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds