Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99377 * 2 1 4 4 N 1.34774 * 120.00389 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00023 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47095 * 35.00131 * 5 4 2 7 7 C 1.53000 * 109.47135 * 154.99761 * 5 4 2 8 8 C 1.50699 * 109.47257 * 295.00273 * 7 5 4 9 9 O 1.21284 * 119.99746 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00107 * 179.97438 * 8 7 5 11 11 C 1.46502 * 120.00248 * 179.97438 * 10 8 7 12 12 C 1.52991 * 109.47258 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.59195 * 60.07549 * 12 11 10 14 14 C 1.53199 * 109.58751 * 180.50018 * 12 11 10 15 15 C 1.53036 * 109.31301 * 174.42065 * 14 12 11 16 16 C 1.53038 * 109.54040 * 298.63695 * 15 14 12 17 17 C 1.53191 * 109.31329 * 61.36567 * 16 15 14 18 18 N 1.46922 * 109.58811 * 299.78999 * 12 11 10 19 19 C 1.36941 * 120.63161 * 6.58501 * 18 12 11 20 20 H 1.08002 * 119.99413 * 328.97078 * 19 18 12 21 21 C 1.38805 * 120.00311 * 148.97100 * 19 18 12 22 22 N 1.31620 * 119.99892 * 345.96191 * 21 19 18 23 23 Si 1.86798 * 120.00286 * 165.96296 * 21 19 18 24 24 H 1.48503 * 109.47022 * 59.99762 * 23 21 19 25 25 H 1.48497 * 109.47445 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47288 * 300.00099 * 23 21 19 27 27 C 1.50701 * 109.47532 * 274.99780 * 5 4 2 28 28 N 1.34775 * 120.00518 * 179.97438 * 27 5 4 29 29 O 1.21279 * 119.99513 * 0.02562 * 27 5 4 30 30 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47561 * 299.99824 * 1 2 3 32 32 H 1.09001 * 109.47191 * 59.99781 * 1 2 3 33 33 H 0.96998 * 120.00006 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47203 * 174.99870 * 7 5 4 35 35 H 1.09003 * 109.46954 * 55.00043 * 7 5 4 36 36 H 0.97004 * 120.00179 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.46671 * 59.99861 * 11 10 8 38 38 H 1.09003 * 109.47057 * 300.00300 * 11 10 8 39 39 H 1.08995 * 109.49961 * 294.37582 * 14 12 11 40 40 H 1.09004 * 109.49331 * 54.47091 * 14 12 11 41 41 H 1.09002 * 109.46250 * 178.62010 * 15 14 12 42 42 H 1.09002 * 109.44918 * 58.64964 * 15 14 12 43 43 H 1.09000 * 109.50154 * 301.41476 * 16 15 14 44 44 H 1.08998 * 109.50420 * 181.31757 * 16 15 14 45 45 H 1.09007 * 109.58726 * 185.57723 * 17 16 15 46 46 H 1.08999 * 109.70813 * 65.22344 * 17 16 15 47 47 H 0.96999 * 119.99823 * 180.02562 * 22 21 19 48 48 H 0.97006 * 119.99132 * 0.02562 * 28 27 5 49 49 H 0.96995 * 120.00036 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6458 -1.1670 -0.0011 6 1 4.0094 -0.3253 0.5884 7 6 4.1562 -2.4745 0.6081 8 6 3.7580 -2.5412 2.0600 9 8 3.1285 -1.6323 2.5586 10 7 4.1015 -3.6110 2.8045 11 6 3.7149 -3.6757 4.2161 12 6 4.2251 -4.9831 4.8252 13 1 5.3115 -5.0237 4.7460 14 6 3.8115 -5.0592 6.2983 15 6 4.2022 -6.4265 6.8637 16 6 3.4647 -7.5270 6.0975 17 6 3.8744 -7.4789 4.6222 18 7 3.6362 -6.1228 4.1092 19 6 2.8792 -5.9251 2.9853 20 1 2.2956 -5.0225 2.8793 21 6 2.8620 -6.8845 1.9823 22 7 3.7662 -7.8409 1.9709 23 14 1.5556 -6.8185 0.6488 24 1 1.6634 -5.5327 -0.0865 25 1 1.7551 -7.9466 -0.2960 26 1 0.2101 -6.9230 1.2683 27 6 4.1477 -1.0429 -1.4166 28 7 5.4727 -1.0208 -1.6625 29 8 3.3592 -0.9620 -2.3346 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6960 -2.0072 -0.0005 34 1 5.2424 -2.5134 0.5270 35 1 3.7214 -3.3187 0.0729 36 1 4.6053 -4.3377 2.4058 37 1 2.6287 -3.6360 4.2975 38 1 4.1504 -2.8317 4.7511 39 1 4.3191 -4.2748 6.8597 40 1 2.7328 -4.9262 6.3806 41 1 3.9312 -6.4743 7.9184 42 1 5.2778 -6.5690 6.7584 43 1 2.3893 -7.3709 6.1816 44 1 3.7254 -8.4991 6.5159 45 1 3.2795 -8.1943 4.0542 46 1 4.9318 -7.7254 4.5261 47 1 3.7544 -8.5111 1.2699 48 1 6.1032 -1.0852 -0.9281 49 1 5.7956 -0.9413 -2.5736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714116116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -98.874642 kcal Electronic energy + Delta-G solvation = -31532.300296 eV Core-core repulsion = 27301.510168 eV Total energy + Delta-G solvation = -4230.790128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.47955 -39.14437 -38.61738 -37.78582 -34.91007 -34.16315 -33.80718 -33.15602 -31.57863 -30.73290 -30.00257 -29.00496 -26.37930 -25.36063 -24.13450 -22.23004 -21.13630 -20.74944 -20.26161 -19.90414 -19.16545 -18.00572 -17.20629 -16.81875 -16.70474 -15.96935 -15.83745 -15.66680 -15.25592 -14.85103 -14.62239 -14.43824 -14.15090 -13.95287 -13.70690 -13.47275 -13.33000 -13.06911 -12.90829 -12.68612 -12.49655 -12.20334 -12.11410 -12.03705 -11.80714 -11.53385 -11.26330 -11.02931 -10.86812 -10.63885 -10.38648 -10.30807 -10.23588 -10.08057 -9.80422 -9.76306 -9.66058 -9.53849 -9.35416 -8.93802 -8.68408 -8.32195 -6.76024 -5.94364 -3.40999 2.52237 2.78036 3.02505 3.15766 3.21619 3.31881 3.34115 3.52749 3.80826 4.32048 4.55574 4.80348 4.95246 5.07729 5.14100 5.22518 5.25093 5.33867 5.41997 5.43259 5.51385 5.57486 5.62188 5.71092 5.88566 5.89619 5.97482 6.07789 6.22740 6.29783 6.33828 6.40697 6.52638 6.63356 6.66532 6.66589 6.78452 6.89618 7.06840 7.18157 7.29962 7.56504 7.61053 7.67544 8.12289 8.15158 8.30361 8.38523 8.72704 9.05584 9.67629 10.26306 11.12276 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.003667 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.770010 B = 7634.331386 C = 8346.965505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.527 3.473 3 O -0.555 6.555 4 N -0.695 5.695 5 C 0.148 3.852 6 H 0.123 0.877 7 C -0.150 4.150 8 C 0.506 3.494 9 O -0.551 6.551 10 N -0.691 5.691 11 C 0.136 3.864 12 C 0.161 3.839 13 H 0.032 0.968 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.252 4.252 20 H 0.069 0.931 21 C 0.008 3.992 22 N -0.898 5.898 23 Si 0.894 3.106 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.509 3.491 28 N -0.854 5.854 29 O -0.532 6.532 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.084 0.916 46 H 0.018 0.982 47 H 0.255 0.745 48 H 0.402 0.598 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 6.756 0.284 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.315 3.685 3 O -0.433 6.433 4 N -0.346 5.346 5 C 0.038 3.962 6 H 0.140 0.860 7 C -0.191 4.191 8 C 0.291 3.709 9 O -0.430 6.430 10 N -0.341 5.341 11 C 0.012 3.988 12 C 0.053 3.947 13 H 0.049 0.951 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.312 5.312 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.191 4.191 22 N -0.542 5.542 23 Si 0.723 3.277 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.292 3.708 28 N -0.419 5.419 29 O -0.407 6.407 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.240 0.760 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.037 0.963 47 H 0.065 0.935 48 H 0.230 0.770 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.603 8.034 0.055 8.446 hybrid contribution -0.163 -1.100 -0.934 1.452 sum 2.440 6.934 -0.879 7.404 Atomic orbital electron populations 1.21789 0.91710 1.04298 1.04912 1.20616 0.90532 0.83144 0.74185 1.90665 1.70766 1.31462 1.50381 1.45521 1.04934 1.09390 1.74788 1.20467 0.83094 1.00291 0.92388 0.85973 1.21946 1.03685 0.98041 0.95446 1.20098 0.80492 0.82667 0.87638 1.90707 1.40806 1.38166 1.73353 1.45992 1.56014 1.20778 1.11360 1.21280 1.00387 0.96564 0.80617 1.20730 0.95441 0.87661 0.90819 0.95077 1.21939 1.01175 0.96584 0.97012 1.21360 0.99780 0.95542 0.97830 1.22192 0.99819 0.96571 0.99778 1.20753 0.98152 0.87491 0.88811 1.44064 1.58819 1.00061 1.28275 1.19142 1.19442 1.05664 0.93945 0.91305 1.25079 0.97583 0.99194 0.97286 1.69990 1.33241 1.16673 1.34299 0.86530 0.82269 0.77236 0.81617 1.20867 1.21666 1.21011 1.21163 0.82647 0.75042 0.91959 1.43834 1.07299 1.77934 1.12785 1.90726 1.55360 1.48509 1.46154 0.90547 0.88744 0.88945 0.75964 0.87352 0.87412 0.74688 0.91609 0.92675 0.93049 0.92105 0.93712 0.92883 0.92842 0.93534 0.89818 0.96347 0.93485 0.76964 0.76795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.39 36.00 0.37 -1.58 16 2 C 0.53 8.46 7.77 -10.99 -0.09 8.37 16 3 O -0.55 -10.82 16.76 5.55 0.09 -10.73 16 4 N -0.70 -10.41 3.75 -54.94 -0.21 -10.61 16 5 C 0.15 2.03 1.94 -69.09 -0.13 1.90 16 6 H 0.12 1.81 7.39 -51.93 -0.38 1.43 16 7 C -0.15 -1.86 5.19 -27.88 -0.14 -2.00 16 8 C 0.51 7.97 7.69 -10.99 -0.08 7.89 16 9 O -0.55 -10.26 15.35 5.55 0.09 -10.17 16 10 N -0.69 -11.31 3.84 -60.29 -0.23 -11.54 16 11 C 0.14 2.30 4.43 -4.05 -0.02 2.28 16 12 C 0.16 2.84 3.01 -67.60 -0.20 2.63 16 13 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 14 C -0.13 -1.99 5.37 -26.61 -0.14 -2.14 16 15 C -0.11 -1.66 5.88 -26.69 -0.16 -1.81 16 16 C -0.14 -2.53 6.08 -26.61 -0.16 -2.70 16 17 C 0.17 3.68 5.27 -3.71 -0.02 3.66 16 18 N -0.59 -12.42 2.97 -164.77 -0.49 -12.91 16 19 C -0.25 -5.77 6.97 -15.06 -0.10 -5.87 16 20 H 0.07 1.60 5.86 -52.49 -0.31 1.29 16 21 C 0.01 0.19 4.97 -17.43 -0.09 0.11 16 22 N -0.90 -22.89 11.23 55.49 0.62 -22.27 16 23 Si 0.89 19.57 29.58 -169.99 -5.03 14.55 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.51 7.00 7.46 -10.99 -0.08 6.92 16 28 N -0.85 -7.67 8.74 31.22 0.27 -7.39 16 29 O -0.53 -9.47 17.16 5.56 0.10 -9.37 16 30 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.41 5.62 8.44 -40.82 -0.34 5.28 16 34 H 0.11 0.96 7.43 -51.93 -0.39 0.57 16 35 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.42 7.12 7.39 -40.82 -0.30 6.82 16 37 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 2.03 6.19 -51.93 -0.32 1.71 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 48 H 0.40 2.41 8.19 -40.82 -0.33 2.08 16 49 H 0.40 3.13 8.93 -40.82 -0.36 2.76 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -32.67 394.28 -7.64 -40.31 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -7.75 Total: 16.55 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: -1.05 Total: 17.66 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.03 Total: -64.72 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: 0.27 Total: -30.28 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.67 -7.64 -40.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714116116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.568 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds