Wall clock time and date at job start Sat Apr 11 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99703 * 2 1 4 4 N 1.34770 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00086 * 180.02562 * 4 2 1 6 6 C 1.50696 * 109.47752 * 179.97438 * 5 4 2 7 7 O 1.21290 * 119.99431 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00515 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99788 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46788 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00281 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00603 * 185.12577 * 12 10 9 14 14 C 1.53007 * 109.46953 * 298.24029 * 13 12 10 15 15 C 1.52998 * 109.47031 * 58.23916 * 13 12 10 16 16 N 1.46494 * 109.47223 * 60.00359 * 15 13 12 17 17 C 1.36938 * 120.00039 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99936 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99762 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99681 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47188 * 90.00140 * 21 19 17 23 23 H 1.48500 * 109.46928 * 210.00053 * 21 19 17 24 24 H 1.48502 * 109.47329 * 329.99901 * 21 19 17 25 25 C 1.52995 * 109.47429 * 178.24191 * 13 12 10 26 26 C 1.52998 * 117.50196 * 132.09148 * 25 13 12 27 27 C 1.52996 * 117.50062 * 63.42979 * 25 13 12 28 28 H 1.08994 * 109.47258 * 239.99919 * 1 2 3 29 29 H 1.09004 * 109.47097 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47369 * 120.00051 * 1 2 3 31 31 H 0.96995 * 120.00566 * 359.97438 * 4 2 1 32 32 H 1.09004 * 109.47284 * 59.99752 * 5 4 2 33 33 H 1.09002 * 109.47081 * 300.00376 * 5 4 2 34 34 H 0.96997 * 119.99794 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47490 * 59.99643 * 9 8 6 36 36 H 1.09007 * 109.47223 * 299.99633 * 9 8 6 37 37 H 0.97004 * 119.99684 * 5.12635 * 12 10 9 38 38 H 1.09001 * 109.46988 * 299.99966 * 14 13 12 39 39 H 1.08995 * 109.46896 * 179.97438 * 14 13 12 40 40 H 1.09004 * 109.46816 * 59.99811 * 14 13 12 41 41 H 1.09006 * 109.47033 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47320 * 300.00063 * 15 13 12 43 43 H 0.97002 * 120.00037 * 359.97438 * 16 15 13 44 44 H 0.97000 * 119.99973 * 179.97438 * 20 19 17 45 45 H 1.09001 * 115.54848 * 277.75984 * 25 13 12 46 46 H 1.09005 * 117.49922 * 0.02562 * 26 25 13 47 47 H 1.09000 * 117.50080 * 145.02015 * 26 25 13 48 48 H 1.09001 * 117.50213 * 214.97909 * 27 25 13 49 49 H 1.09003 * 117.50019 * 0.02562 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1482 -2.5880 -0.0001 7 8 3.3600 -3.5098 -0.0011 8 7 5.4733 -2.8343 -0.0001 9 6 5.9615 -4.2155 -0.0008 10 6 7.4685 -4.2155 -0.0014 11 8 8.0750 -3.1653 -0.0017 12 7 8.1425 -5.3827 -0.0015 13 6 9.6031 -5.3853 0.1112 14 6 10.2083 -4.6476 -1.0849 15 6 10.0158 -4.6824 1.4060 16 7 9.4364 -5.3886 2.5512 17 6 9.6712 -4.9390 3.8232 18 1 10.2832 -4.0634 3.9820 19 6 9.1217 -5.6080 4.9083 20 7 9.3479 -5.1761 6.1309 21 14 8.0627 -7.1219 4.6334 22 1 8.9208 -8.3338 4.6376 23 1 7.0553 -7.2251 5.7196 24 1 7.3698 -7.0104 3.3247 25 6 10.1106 -6.8285 0.1303 26 6 11.2778 -7.1792 -0.7946 27 6 9.8677 -7.6793 -1.1178 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 4.0088 -0.6540 0.8905 33 1 4.0095 -0.6527 -0.8894 34 1 6.1036 -2.0970 -0.0005 35 1 5.5982 -4.7289 -0.8910 36 1 5.5982 -4.7298 0.8890 37 1 7.6603 -6.2211 -0.0764 38 1 9.9141 -5.1484 -2.0073 39 1 11.2950 -4.6492 -1.0007 40 1 9.8466 -3.6194 -1.0984 41 1 11.1027 -4.6839 1.4897 42 1 9.6543 -3.6542 1.3924 43 1 8.8864 -6.1748 2.4085 44 1 8.9636 -5.6433 6.8892 45 1 10.0667 -7.3295 1.0973 46 1 11.6845 -6.3816 -1.4164 47 1 12.0016 -7.9112 -0.4362 48 1 9.6643 -8.7402 -0.9721 49 1 9.3467 -7.2108 -1.9528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714167654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:21 Heat of formation + Delta-G solvation = -92.710063 kcal Electronic energy + Delta-G solvation = -30129.979751 eV Core-core repulsion = 25899.456939 eV Total energy + Delta-G solvation = -4230.522812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.72084 -41.12729 -40.16953 -39.09212 -36.54886 -35.82146 -35.45135 -35.06508 -33.43163 -31.90944 -31.37528 -29.43862 -27.80777 -27.12886 -24.98554 -23.88603 -23.14095 -21.84711 -21.67254 -21.55634 -20.40480 -19.69867 -19.29336 -18.07836 -17.77143 -17.29161 -17.17241 -16.91531 -16.63842 -16.52352 -16.46505 -16.14877 -15.77706 -15.46803 -15.08847 -14.82624 -14.64287 -14.42341 -14.21982 -14.05654 -13.91412 -13.84935 -13.50681 -13.37521 -13.32867 -13.13990 -12.93731 -12.86244 -12.35505 -12.28589 -12.07439 -12.01074 -11.85189 -11.31521 -11.26391 -11.11205 -11.10712 -10.97192 -10.67922 -10.42523 -10.24683 -10.03505 -9.27954 -8.04306 -5.37046 1.30711 1.33142 1.37464 1.44774 1.48492 1.58241 1.60200 2.13718 2.45419 2.48652 2.99443 3.26520 3.45676 3.52538 3.63379 3.73048 3.87504 3.92590 4.13323 4.17530 4.20701 4.29131 4.32141 4.34074 4.37626 4.55456 4.59361 4.67417 4.78936 4.85079 4.87897 4.97112 5.04397 5.05721 5.08206 5.10824 5.24203 5.26650 5.33296 5.43300 5.58277 5.73596 6.18593 6.25929 6.45763 6.52957 6.92240 7.06225 7.15337 7.19333 7.80665 8.03900 9.17883 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.002866 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.217653 B = 9766.042300 C =11391.364156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.507 3.493 3 O -0.596 6.596 4 N -0.715 5.715 5 C 0.100 3.900 6 C 0.519 3.481 7 O -0.564 6.564 8 N -0.707 5.707 9 C 0.103 3.897 10 C 0.513 3.487 11 O -0.558 6.558 12 N -0.703 5.703 13 C 0.210 3.790 14 C -0.154 4.154 15 C 0.147 3.853 16 N -0.743 5.743 17 C -0.230 4.230 18 H 0.046 0.954 19 C -0.067 4.067 20 N -0.987 5.987 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.299 1.299 24 H -0.245 1.245 25 C -0.182 4.182 26 C -0.166 4.166 27 C -0.153 4.153 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.419 0.581 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.027 0.973 43 H 0.367 0.633 44 H 0.257 0.743 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 -1.933 -22.386 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.477 6.477 4 N -0.371 5.371 5 C -0.027 4.027 6 C 0.305 3.695 7 O -0.444 6.444 8 N -0.361 5.361 9 C -0.024 4.024 10 C 0.300 3.700 11 O -0.436 6.436 12 N -0.354 5.354 13 C 0.124 3.876 14 C -0.212 4.212 15 C 0.020 3.980 16 N -0.390 5.390 17 C -0.361 4.361 18 H 0.064 0.936 19 C -0.258 4.258 20 N -0.638 5.638 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.169 1.169 25 C -0.201 4.201 26 C -0.203 4.203 27 C -0.190 4.190 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.258 0.742 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.256 0.744 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.130 0.870 47 H 0.117 0.883 48 H 0.125 0.875 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.822 -0.982 -22.236 25.202 hybrid contribution -0.202 -1.003 1.052 1.468 sum -12.025 -1.986 -21.184 24.440 Atomic orbital electron populations 1.21928 0.87605 1.06324 1.06523 1.21632 0.92458 0.82182 0.74044 1.90726 1.72130 1.32971 1.51914 1.45818 1.05718 1.10315 1.75218 1.21030 0.82944 0.92926 1.05816 1.20600 0.82037 0.91496 0.75331 1.90690 1.55621 1.46645 1.51395 1.45575 1.07232 1.09034 1.74287 1.21131 0.90297 0.85120 1.05851 1.20593 0.90012 0.84124 0.75314 1.90646 1.70143 1.32321 1.50527 1.45823 1.07198 1.08688 1.73734 1.19885 0.79233 0.94106 0.94355 1.22210 1.01312 1.01249 0.96448 1.21099 0.95776 0.95302 0.85837 1.42456 1.61498 1.33430 1.01572 1.18974 1.24754 1.08585 0.83812 0.93610 1.25541 1.02727 1.02954 0.94546 1.69905 1.51283 1.44060 0.98505 0.85394 0.78662 0.79647 0.78014 1.20101 1.22580 1.16946 1.22322 1.06963 0.94368 0.96465 1.23203 0.91607 1.03815 1.01679 1.23077 0.98913 0.99902 0.97089 0.87301 0.88813 0.86885 0.74205 0.88104 0.86983 0.74356 0.85764 0.88576 0.75070 0.90154 0.90741 0.91980 0.95785 0.95462 0.79898 0.93412 0.89062 0.87008 0.88329 0.87525 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.32 71.24 0.74 -0.82 16 2 C 0.51 9.66 7.94 87.66 0.70 10.35 16 3 O -0.60 -16.95 17.09 -3.04 -0.05 -17.00 16 4 N -0.71 -12.44 5.53 -466.80 -2.58 -15.02 16 5 C 0.10 1.86 6.15 85.63 0.53 2.39 16 6 C 0.52 11.07 7.90 87.66 0.69 11.77 16 7 O -0.56 -14.41 15.67 -3.06 -0.05 -14.46 16 8 N -0.71 -15.14 5.53 -466.78 -2.58 -17.72 16 9 C 0.10 2.20 6.16 85.63 0.53 2.72 16 10 C 0.51 13.42 7.30 87.66 0.64 14.06 16 11 O -0.56 -18.05 11.90 -3.02 -0.04 -18.08 16 12 N -0.70 -16.58 4.73 -422.94 -2.00 -18.58 16 13 C 0.21 5.63 0.54 3.60 0.00 5.63 16 14 C -0.15 -3.51 7.06 71.98 0.51 -3.00 16 15 C 0.15 5.75 4.94 86.38 0.43 6.18 16 16 N -0.74 -34.19 4.83 -343.46 -1.66 -35.85 16 17 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 18 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 20 N -0.99 -64.29 13.97 21.65 0.30 -63.99 16 21 Si 0.96 44.74 27.74 68.60 1.90 46.64 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 25 C -0.18 -4.26 4.86 -10.80 -0.05 -4.32 16 26 C -0.17 -3.00 9.63 30.62 0.29 -2.71 16 27 C -0.15 -2.35 9.72 30.62 0.30 -2.05 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.93 8.12 -2.38 -0.02 0.91 16 30 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.42 6.32 7.44 -92.71 -0.69 5.63 16 32 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.42 8.96 7.44 -92.71 -0.69 8.27 16 35 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.41 7.44 8.38 -92.71 -0.78 6.66 16 38 H 0.08 1.41 7.00 -2.39 -0.02 1.40 16 39 H 0.07 1.59 6.81 -2.39 -0.02 1.58 16 40 H 0.06 1.69 6.13 -2.39 -0.01 1.68 16 41 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.03 1.22 6.22 -2.39 -0.01 1.20 16 43 H 0.37 15.57 4.49 -92.71 -0.42 15.15 16 44 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 45 H 0.09 2.65 7.09 -2.39 -0.02 2.63 16 46 H 0.11 1.81 5.88 -2.38 -0.01 1.80 16 47 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.11 1.37 7.39 -2.39 -0.02 1.36 16 Total: -1.00 -83.20 398.23 -1.72 -84.91 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -1.61 Total: 44.95 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 6.64 Total: 24.21 kcal Atomic # 7 Polarization: -142.65 SS G_CDS: -8.52 Total: -151.17 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.14 Total: -49.55 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Total: -83.20 -1.72 -84.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714167654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.796 kcal (2) G-P(sol) polarization free energy of solvation -83.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds