Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00183 * 2 1 4 4 N 1.34781 * 120.00117 * 179.97438 * 2 1 3 5 5 C 1.46505 * 120.00164 * 179.97438 * 4 2 1 6 6 C 1.50701 * 109.46931 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00297 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99564 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99724 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47044 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99834 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00296 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00318 * 185.19000 * 12 10 9 14 14 C 1.53005 * 109.47145 * 183.95049 * 13 12 10 15 15 C 1.52999 * 109.46969 * 63.95184 * 13 12 10 16 16 N 1.46500 * 109.47030 * 59.99927 * 15 13 12 17 17 C 1.36937 * 120.00138 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99755 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00284 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00119 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00156 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47001 * 90.00192 * 21 19 17 23 23 H 1.48499 * 109.47592 * 210.00703 * 21 19 17 24 24 H 1.48501 * 109.46810 * 330.00394 * 21 19 17 25 25 C 1.52994 * 109.47682 * 303.95092 * 13 12 10 26 26 C 1.52995 * 117.52274 * 228.44841 * 25 13 12 27 27 C 1.53001 * 117.49975 * 297.08334 * 25 13 12 28 28 H 1.09000 * 109.46948 * 270.00411 * 1 2 3 29 29 H 1.08994 * 109.46981 * 30.00517 * 1 2 3 30 30 H 1.09000 * 109.46993 * 150.00659 * 1 2 3 31 31 H 0.97004 * 119.99878 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46730 * 60.00365 * 5 4 2 33 33 H 1.08993 * 109.46849 * 300.00082 * 5 4 2 34 34 H 0.96996 * 120.00161 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.46959 * 60.00581 * 9 8 6 36 36 H 1.08998 * 109.47200 * 300.00246 * 9 8 6 37 37 H 0.97001 * 119.99979 * 5.20019 * 12 10 9 38 38 H 1.09003 * 109.46706 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47099 * 299.99868 * 14 13 12 40 40 H 1.08993 * 109.46980 * 60.00226 * 14 13 12 41 41 H 1.09004 * 109.47388 * 179.97438 * 15 13 12 42 42 H 1.08993 * 109.47268 * 299.99898 * 15 13 12 43 43 H 0.96996 * 120.00435 * 359.97438 * 16 15 13 44 44 H 0.97003 * 120.00431 * 180.02562 * 20 19 17 45 45 H 1.09009 * 115.55026 * 82.74337 * 25 13 12 46 46 H 1.09002 * 117.50479 * 214.96757 * 26 25 13 47 47 H 1.08997 * 117.49803 * 359.97438 * 26 25 13 48 48 H 1.08998 * 117.49554 * 359.96562 * 27 25 13 49 49 H 1.08998 * 117.50237 * 144.97406 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0000 6 6 4.1482 -2.5881 0.0001 7 8 3.3601 -3.5099 0.0011 8 7 5.4733 -2.8343 0.0001 9 6 5.9617 -4.2156 0.0008 10 6 7.4686 -4.2156 0.0001 11 8 8.0751 -3.1651 -0.0004 12 7 8.1426 -5.3827 0.0001 13 6 9.6031 -5.3853 0.1141 14 6 10.1218 -6.8193 -0.0099 15 6 10.0094 -4.8117 1.4731 16 7 9.4347 -5.6331 2.5414 17 6 9.6642 -5.3101 3.8522 18 1 10.2693 -4.4500 4.0984 19 6 9.1201 -6.0886 4.8644 20 7 9.3403 -5.7778 6.1243 21 14 8.0741 -7.5765 4.4386 22 1 8.9427 -8.7754 4.3229 23 1 7.0670 -7.7961 5.5077 24 1 7.3810 -7.3409 3.1466 25 6 10.2034 -4.5276 -1.0015 26 6 11.3532 -5.1272 -1.8133 27 6 9.9672 -4.9788 -2.4443 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6959 -2.0073 0.0005 32 1 4.0096 -0.6528 0.8895 33 1 4.0089 -0.6540 -0.8905 34 1 6.1036 -2.0971 0.0005 35 1 5.5983 -4.7298 -0.8889 36 1 5.5983 -4.7289 0.8910 37 1 7.6606 -6.2211 -0.0757 38 1 11.2085 -6.8212 0.0754 39 1 9.6942 -7.4304 0.7850 40 1 9.8323 -7.2279 -0.9780 41 1 11.0961 -4.8140 1.5582 42 1 9.6399 -3.7901 1.5615 43 1 8.8909 -6.4053 2.3203 44 1 8.9603 -6.3220 6.8317 45 1 10.2299 -3.4552 -0.8076 46 1 12.1363 -4.4496 -2.1535 47 1 11.6826 -6.1330 -1.5524 48 1 9.3847 -5.8870 -2.5985 49 1 9.8382 -4.2034 -3.1994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714167655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -62.056390 kcal Electronic energy + Delta-G solvation = -30123.985217 eV Core-core repulsion = 25894.791648 eV Total energy + Delta-G solvation = -4229.193569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68520 -40.17740 -39.28235 -37.89632 -35.28990 -34.87929 -34.51448 -33.67791 -31.62442 -30.91656 -30.02460 -28.63045 -26.67698 -26.16783 -23.74442 -22.43798 -21.38761 -21.08737 -20.88710 -20.78704 -19.02749 -18.43677 -17.81469 -17.08943 -16.82979 -16.43555 -16.29349 -15.90133 -15.67274 -15.54884 -15.02179 -14.82534 -14.63180 -14.11118 -14.07182 -13.68699 -13.53099 -13.28797 -13.13299 -12.93122 -12.90673 -12.65786 -12.56049 -12.31139 -12.21618 -12.06496 -11.63103 -11.27229 -11.14360 -10.97411 -10.84243 -10.45010 -10.36658 -10.28356 -10.24704 -10.07046 -9.64414 -9.59085 -9.55802 -9.39702 -8.91941 -8.87737 -7.24205 -5.78823 -3.13909 2.21751 2.33363 2.39331 2.66047 3.01146 3.27721 3.31441 3.33786 3.39878 3.95068 4.32071 4.49501 4.54196 4.54957 4.73076 4.88456 4.91300 4.95085 5.03418 5.07304 5.08344 5.12711 5.15610 5.24142 5.29125 5.44806 5.47803 5.51825 5.58053 5.61958 5.82607 5.92436 5.95405 5.97979 6.01830 6.11083 6.27185 6.32019 6.37687 6.68558 6.83605 7.13987 7.17455 7.52891 7.81994 7.88246 7.97815 8.23984 8.39768 9.18602 9.90314 10.10293 11.39916 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.002963 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.333137 B = 9446.665567 C =11500.300156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.719 5.719 5 C 0.099 3.901 6 C 0.513 3.487 7 O -0.542 6.542 8 N -0.707 5.707 9 C 0.098 3.902 10 C 0.520 3.480 11 O -0.528 6.528 12 N -0.709 5.709 13 C 0.197 3.803 14 C -0.157 4.157 15 C 0.152 3.848 16 N -0.751 5.751 17 C -0.239 4.239 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.142 4.142 26 C -0.182 4.182 27 C -0.175 4.175 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.416 0.584 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.398 0.602 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.358 0.642 44 H 0.259 0.741 45 H 0.118 0.882 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 2.897 -19.706 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.376 5.376 5 C -0.028 4.028 6 C 0.298 3.702 7 O -0.420 6.420 8 N -0.362 5.362 9 C -0.029 4.029 10 C 0.305 3.695 11 O -0.405 6.405 12 N -0.360 5.360 13 C 0.112 3.888 14 C -0.214 4.214 15 C 0.024 3.976 16 N -0.397 5.397 17 C -0.369 4.369 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.161 4.161 26 C -0.219 4.219 27 C -0.212 4.212 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.255 0.745 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.232 0.768 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.191 0.809 44 H 0.069 0.931 45 H 0.136 0.864 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.107 0.893 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.056 3.858 -19.470 22.250 hybrid contribution -0.867 -1.699 -0.055 1.908 sum -10.923 2.159 -19.525 22.477 Atomic orbital electron populations 1.21861 0.91077 1.05011 1.05065 1.20851 0.90806 0.82995 0.75382 1.90746 1.70791 1.31395 1.49642 1.45832 1.05909 1.10047 1.75773 1.21031 0.82462 0.93941 1.05367 1.20453 0.82379 0.91231 0.76088 1.90704 1.55198 1.45900 1.50191 1.45534 1.07100 1.08963 1.74554 1.21115 0.92129 0.84767 1.04885 1.20154 0.89015 0.84458 0.75895 1.90660 1.69462 1.31101 1.49254 1.45899 1.07512 1.08161 1.74398 1.20139 0.78257 0.95294 0.95143 1.22159 1.02859 0.94743 1.01660 1.20980 0.96747 0.95256 0.84641 1.42621 1.62067 1.32358 1.02635 1.19049 1.26644 1.10483 0.80681 0.89282 1.24661 1.00594 0.98941 0.95056 1.69696 1.49564 1.40892 0.98099 0.86572 0.80685 0.84198 0.77097 1.21121 1.21754 1.20671 1.22560 1.01777 1.00750 0.91049 1.23151 0.91710 1.02756 1.04278 1.22806 0.99604 1.02808 0.95985 0.88594 0.88703 0.89987 0.74925 0.87862 0.88065 0.74509 0.88537 0.87954 0.76794 0.90094 0.91372 0.92430 0.94600 0.93662 0.80926 0.93081 0.86406 0.89009 0.88170 0.89273 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.30 36.00 0.37 -0.58 16 2 C 0.51 5.03 7.94 -10.98 -0.09 4.94 16 3 O -0.55 -7.67 17.10 5.56 0.10 -7.57 16 4 N -0.72 -6.56 5.53 -61.47 -0.34 -6.90 16 5 C 0.10 0.94 6.15 -5.19 -0.03 0.90 16 6 C 0.51 5.68 7.90 -10.98 -0.09 5.60 16 7 O -0.54 -7.31 15.67 5.56 0.09 -7.22 16 8 N -0.71 -7.79 5.53 -61.47 -0.34 -8.13 16 9 C 0.10 1.13 6.16 -5.19 -0.03 1.10 16 10 C 0.52 7.04 7.31 -10.99 -0.08 6.96 16 11 O -0.53 -8.43 12.49 5.55 0.07 -8.36 16 12 N -0.71 -9.04 4.71 -47.61 -0.22 -9.26 16 13 C 0.20 2.76 0.54 -131.82 -0.07 2.69 16 14 C -0.16 -1.92 7.04 37.16 0.26 -1.66 16 15 C 0.15 2.89 5.02 -4.04 -0.02 2.87 16 16 N -0.75 -16.99 4.98 -59.91 -0.30 -17.29 16 17 C -0.24 -6.67 10.47 -15.06 -0.16 -6.83 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 21 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 25 C -0.14 -1.80 4.05 -90.62 -0.37 -2.17 16 26 C -0.18 -1.91 9.62 -26.73 -0.26 -2.16 16 27 C -0.17 -1.82 9.81 -26.73 -0.26 -2.08 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.41 3.39 7.44 -40.82 -0.30 3.09 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.42 4.43 7.44 -40.82 -0.30 4.13 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.40 4.15 8.48 -40.82 -0.35 3.81 16 38 H 0.08 0.98 6.84 -51.93 -0.36 0.62 16 39 H 0.07 0.94 6.86 -51.93 -0.36 0.58 16 40 H 0.06 0.56 7.01 -51.93 -0.36 0.20 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.97 6.64 -51.93 -0.35 0.62 16 43 H 0.36 7.70 4.21 -40.82 -0.17 7.53 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.12 1.74 7.18 -51.92 -0.37 1.37 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.10 0.99 5.87 -51.93 -0.31 0.68 16 48 H 0.09 0.86 7.42 -51.93 -0.39 0.47 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 399.43 15.07 6.02 6.02 Total: -1.00 -36.51 399.43 -7.22 -43.73 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -7.43 Total: 17.14 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -0.92 Total: 9.55 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -0.43 Total: -70.08 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.25 Total: -23.16 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.51 -7.22 -43.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714167655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.327 kcal (2) G-P(sol) polarization free energy of solvation -36.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds