Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00183 * 2 1 4 4 N 1.34781 * 120.00117 * 179.97438 * 2 1 3 5 5 C 1.46505 * 120.00164 * 179.97438 * 4 2 1 6 6 C 1.50701 * 109.46931 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00297 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99564 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99724 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47044 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99834 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00296 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00318 * 185.19000 * 12 10 9 14 14 C 1.53005 * 109.47145 * 183.95049 * 13 12 10 15 15 C 1.52999 * 109.46969 * 63.95184 * 13 12 10 16 16 N 1.46500 * 109.47030 * 59.99927 * 15 13 12 17 17 C 1.36937 * 120.00138 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99755 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00284 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00119 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00156 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47001 * 90.00192 * 21 19 17 23 23 H 1.48499 * 109.47592 * 210.00703 * 21 19 17 24 24 H 1.48501 * 109.46810 * 330.00394 * 21 19 17 25 25 C 1.52994 * 109.47682 * 303.95092 * 13 12 10 26 26 C 1.52995 * 117.52274 * 228.44841 * 25 13 12 27 27 C 1.53001 * 117.49975 * 297.08334 * 25 13 12 28 28 H 1.09000 * 109.46948 * 270.00411 * 1 2 3 29 29 H 1.08994 * 109.46981 * 30.00517 * 1 2 3 30 30 H 1.09000 * 109.46993 * 150.00659 * 1 2 3 31 31 H 0.97004 * 119.99878 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46730 * 60.00365 * 5 4 2 33 33 H 1.08993 * 109.46849 * 300.00082 * 5 4 2 34 34 H 0.96996 * 120.00161 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.46959 * 60.00581 * 9 8 6 36 36 H 1.08998 * 109.47200 * 300.00246 * 9 8 6 37 37 H 0.97001 * 119.99979 * 5.20019 * 12 10 9 38 38 H 1.09003 * 109.46706 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47099 * 299.99868 * 14 13 12 40 40 H 1.08993 * 109.46980 * 60.00226 * 14 13 12 41 41 H 1.09004 * 109.47388 * 179.97438 * 15 13 12 42 42 H 1.08993 * 109.47268 * 299.99898 * 15 13 12 43 43 H 0.96996 * 120.00435 * 359.97438 * 16 15 13 44 44 H 0.97003 * 120.00431 * 180.02562 * 20 19 17 45 45 H 1.09009 * 115.55026 * 82.74337 * 25 13 12 46 46 H 1.09002 * 117.50479 * 214.96757 * 26 25 13 47 47 H 1.08997 * 117.49803 * 359.97438 * 26 25 13 48 48 H 1.08998 * 117.49554 * 359.96562 * 27 25 13 49 49 H 1.08998 * 117.50237 * 144.97406 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0000 6 6 4.1482 -2.5881 0.0001 7 8 3.3601 -3.5099 0.0011 8 7 5.4733 -2.8343 0.0001 9 6 5.9617 -4.2156 0.0008 10 6 7.4686 -4.2156 0.0001 11 8 8.0751 -3.1651 -0.0004 12 7 8.1426 -5.3827 0.0001 13 6 9.6031 -5.3853 0.1141 14 6 10.1218 -6.8193 -0.0099 15 6 10.0094 -4.8117 1.4731 16 7 9.4347 -5.6331 2.5414 17 6 9.6642 -5.3101 3.8522 18 1 10.2693 -4.4500 4.0984 19 6 9.1201 -6.0886 4.8644 20 7 9.3403 -5.7778 6.1243 21 14 8.0741 -7.5765 4.4386 22 1 8.9427 -8.7754 4.3229 23 1 7.0670 -7.7961 5.5077 24 1 7.3810 -7.3409 3.1466 25 6 10.2034 -4.5276 -1.0015 26 6 11.3532 -5.1272 -1.8133 27 6 9.9672 -4.9788 -2.4443 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6959 -2.0073 0.0005 32 1 4.0096 -0.6528 0.8895 33 1 4.0089 -0.6540 -0.8905 34 1 6.1036 -2.0971 0.0005 35 1 5.5983 -4.7298 -0.8889 36 1 5.5983 -4.7289 0.8910 37 1 7.6606 -6.2211 -0.0757 38 1 11.2085 -6.8212 0.0754 39 1 9.6942 -7.4304 0.7850 40 1 9.8323 -7.2279 -0.9780 41 1 11.0961 -4.8140 1.5582 42 1 9.6399 -3.7901 1.5615 43 1 8.8909 -6.4053 2.3203 44 1 8.9603 -6.3220 6.8317 45 1 10.2299 -3.4552 -0.8076 46 1 12.1363 -4.4496 -2.1535 47 1 11.6826 -6.1330 -1.5524 48 1 9.3847 -5.8870 -2.5985 49 1 9.8382 -4.2034 -3.1994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714167655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -92.797582 kcal Electronic energy + Delta-G solvation = -30125.318255 eV Core-core repulsion = 25894.791648 eV Total energy + Delta-G solvation = -4230.526607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.69202 -41.12007 -40.16775 -38.94767 -36.75067 -35.79541 -35.43901 -35.10957 -33.44986 -31.74002 -31.27158 -29.45964 -28.01693 -27.11681 -25.35673 -23.39261 -22.81539 -22.10568 -21.73038 -21.66689 -20.36395 -19.61851 -19.30256 -17.96135 -17.73937 -17.36631 -17.22195 -16.86455 -16.75599 -16.52616 -16.44481 -16.12144 -15.74290 -15.44862 -15.05777 -14.92434 -14.77958 -14.45094 -14.22166 -14.07120 -13.81734 -13.70811 -13.47405 -13.34765 -13.31646 -13.14498 -12.93574 -12.83661 -12.43929 -12.25172 -12.10154 -11.87604 -11.81676 -11.41012 -11.30674 -11.11309 -11.06896 -11.00429 -10.62713 -10.42726 -10.25105 -10.01450 -9.29662 -8.03472 -5.37182 1.32469 1.33214 1.40289 1.47394 1.51458 1.57725 1.61511 2.15155 2.47061 2.48726 3.05220 3.27543 3.40248 3.47357 3.67716 3.89783 3.92726 4.00901 4.03022 4.18492 4.21115 4.29370 4.31321 4.31581 4.34886 4.51328 4.53578 4.66967 4.78093 4.84851 4.89901 4.97298 5.03385 5.04903 5.08302 5.13125 5.23625 5.26695 5.32510 5.40734 5.57573 5.74050 6.18997 6.25802 6.45335 6.53094 6.92189 7.06821 7.14665 7.22509 7.80116 8.04137 9.18629 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.002963 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.333137 B = 9446.665567 C =11500.300156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.715 5.715 5 C 0.100 3.900 6 C 0.519 3.481 7 O -0.564 6.564 8 N -0.706 5.706 9 C 0.103 3.897 10 C 0.515 3.485 11 O -0.557 6.557 12 N -0.703 5.703 13 C 0.208 3.792 14 C -0.154 4.154 15 C 0.151 3.849 16 N -0.743 5.743 17 C -0.233 4.233 18 H 0.045 0.955 19 C -0.067 4.067 20 N -0.987 5.987 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.300 1.300 24 H -0.242 1.242 25 C -0.163 4.163 26 C -0.172 4.172 27 C -0.155 4.155 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.419 0.581 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.413 0.587 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.027 0.973 42 H 0.016 0.984 43 H 0.368 0.632 44 H 0.257 0.743 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 0.467 -22.588 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.027 4.027 6 C 0.305 3.695 7 O -0.444 6.444 8 N -0.361 5.361 9 C -0.024 4.024 10 C 0.301 3.699 11 O -0.436 6.436 12 N -0.355 5.355 13 C 0.122 3.878 14 C -0.211 4.211 15 C 0.024 3.976 16 N -0.390 5.390 17 C -0.364 4.364 18 H 0.063 0.937 19 C -0.258 4.258 20 N -0.638 5.638 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.227 1.227 24 H -0.166 1.166 25 C -0.183 4.183 26 C -0.209 4.209 27 C -0.192 4.192 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.258 0.742 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.202 0.798 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.124 0.876 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.711 1.394 -22.417 25.330 hybrid contribution -0.247 -0.818 0.871 1.220 sum -11.958 0.576 -21.546 24.648 Atomic orbital electron populations 1.21899 0.87628 1.06415 1.06334 1.21632 0.92445 0.82188 0.74028 1.90724 1.72062 1.32968 1.52030 1.45876 1.05743 1.10313 1.75103 1.21034 0.82953 0.92927 1.05812 1.20601 0.82048 0.91491 0.75343 1.90690 1.55635 1.46651 1.51387 1.45573 1.07208 1.09036 1.74279 1.21131 0.90411 0.85092 1.05796 1.20557 0.89902 0.84222 0.75214 1.90662 1.70260 1.32239 1.50420 1.45847 1.07102 1.08720 1.73864 1.19884 0.79166 0.96540 0.92203 1.22164 1.02899 0.92802 1.03238 1.21027 0.95885 0.93771 0.86899 1.42462 1.62193 1.32979 1.01354 1.18960 1.25320 1.08827 0.83290 0.93739 1.25576 1.02664 1.02920 0.94639 1.69911 1.51481 1.42810 0.99601 0.85383 0.78577 0.79499 0.78177 1.19854 1.22701 1.16632 1.22294 1.04664 0.99105 0.92256 1.23266 0.91731 1.03236 1.02693 1.22876 0.99364 1.03226 0.93742 0.87231 0.88331 0.87558 0.74209 0.88037 0.87037 0.74384 0.85917 0.88544 0.75048 0.89918 0.92447 0.88894 0.95527 0.96587 0.79754 0.93384 0.89314 0.88478 0.86870 0.87553 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.30 71.24 0.73 -0.78 16 2 C 0.51 9.56 7.94 87.66 0.70 10.25 16 3 O -0.60 -16.79 17.10 -3.03 -0.05 -16.84 16 4 N -0.71 -12.32 5.53 -466.78 -2.58 -14.90 16 5 C 0.10 1.84 6.15 85.63 0.53 2.36 16 6 C 0.52 10.96 7.90 87.66 0.69 11.65 16 7 O -0.56 -14.36 15.67 -3.04 -0.05 -14.40 16 8 N -0.71 -14.96 5.53 -466.78 -2.58 -17.54 16 9 C 0.10 2.17 6.16 85.63 0.53 2.70 16 10 C 0.51 13.35 7.31 87.66 0.64 13.99 16 11 O -0.56 -17.95 12.49 -3.06 -0.04 -17.99 16 12 N -0.70 -16.35 4.71 -422.93 -1.99 -18.34 16 13 C 0.21 5.50 0.54 3.60 0.00 5.50 16 14 C -0.15 -3.26 7.04 71.98 0.51 -2.75 16 15 C 0.15 5.86 5.02 86.38 0.43 6.29 16 16 N -0.74 -33.50 4.98 -343.46 -1.71 -35.21 16 17 C -0.23 -13.40 10.47 84.03 0.88 -12.52 16 18 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 20 N -0.99 -63.90 13.97 21.65 0.30 -63.59 16 21 Si 0.96 43.81 27.74 68.60 1.90 45.71 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 24 H -0.24 -9.44 6.52 99.48 0.65 -8.79 16 25 C -0.16 -3.95 4.05 -10.80 -0.04 -3.99 16 26 C -0.17 -3.15 9.62 30.59 0.29 -2.86 16 27 C -0.16 -2.73 9.81 30.60 0.30 -2.43 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.42 6.27 7.44 -92.71 -0.69 5.58 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.42 8.84 7.44 -92.71 -0.69 8.15 16 35 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.41 7.10 8.48 -92.71 -0.79 6.31 16 38 H 0.08 1.75 6.84 -2.39 -0.02 1.73 16 39 H 0.06 1.36 6.86 -2.39 -0.02 1.35 16 40 H 0.09 1.34 7.01 -2.39 -0.02 1.32 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.02 0.72 6.64 -2.39 -0.02 0.70 16 43 H 0.37 15.05 4.21 -92.71 -0.39 14.66 16 44 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 45 H 0.09 2.69 7.18 -2.38 -0.02 2.67 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.11 1.81 5.87 -2.39 -0.01 1.79 16 48 H 0.11 1.54 7.42 -2.39 -0.02 1.52 16 49 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -83.05 399.43 -1.73 -84.78 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -1.60 Total: 44.38 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 6.66 Total: 23.95 kcal Atomic # 7 Polarization: -141.02 SS G_CDS: -8.56 Total: -149.58 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.14 Total: -49.24 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Total: -83.05 -1.73 -84.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714167655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.016 kcal (2) G-P(sol) polarization free energy of solvation -83.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds