Wall clock time and date at job start Sat Apr 11 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99883 * 2 1 4 4 N 1.34777 * 119.99730 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99614 * 179.97438 * 4 2 1 6 6 C 1.50709 * 109.47001 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99753 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99700 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47128 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72554 * 10 9 8 13 13 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46738 * 324.99609 * 13 12 10 15 15 C 1.52993 * 109.47171 * 84.99494 * 13 12 10 16 16 C 1.53006 * 109.47028 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46628 * 299.99857 * 16 15 13 18 18 C 1.52992 * 109.46968 * 60.00493 * 17 16 15 19 19 H 1.09004 * 109.47346 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47849 * 59.99570 * 18 17 16 21 21 C 1.36935 * 119.99723 * 84.99513 * 20 18 17 22 22 H 1.07993 * 120.00191 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99655 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00677 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46786 * 89.99952 * 25 23 21 27 27 H 1.48498 * 109.47539 * 210.00265 * 25 23 21 28 28 H 1.48500 * 109.47188 * 330.00625 * 25 23 21 29 29 C 1.52994 * 109.46945 * 204.99736 * 13 12 10 30 30 H 1.08998 * 109.46798 * 270.00466 * 1 2 3 31 31 H 1.09001 * 109.46745 * 30.00046 * 1 2 3 32 32 H 1.08994 * 109.46953 * 149.99986 * 1 2 3 33 33 H 0.96996 * 119.99887 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47287 * 60.00702 * 5 4 2 35 35 H 1.09002 * 109.47320 * 300.00100 * 5 4 2 36 36 H 0.97005 * 119.99770 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.47786 * 60.00101 * 9 8 6 38 38 H 1.08998 * 109.47558 * 299.99963 * 9 8 6 39 39 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 40 40 H 1.09007 * 109.47428 * 300.00223 * 15 13 12 41 41 H 1.09000 * 109.47196 * 60.00395 * 15 13 12 42 42 H 1.09002 * 109.46733 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.47089 * 59.99987 * 16 15 13 44 44 H 1.09000 * 109.47491 * 299.99883 * 17 16 15 45 45 H 1.09002 * 109.46917 * 180.02562 * 17 16 15 46 46 H 0.96999 * 120.00159 * 265.00257 * 20 18 17 47 47 H 0.96993 * 120.00564 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.47299 * 299.99529 * 29 13 12 49 49 H 1.09006 * 109.47305 * 59.99718 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1482 -2.5881 0.0001 7 8 3.3601 -3.5099 0.0001 8 7 5.4733 -2.8344 0.0001 9 6 5.9615 -4.2156 -0.0003 10 6 7.4686 -4.2157 -0.0008 11 8 8.0750 -3.1653 -0.0012 12 7 8.1424 -5.3829 0.0044 13 6 9.6074 -5.3829 0.0045 14 1 9.9708 -4.5437 -0.5887 15 6 10.1173 -5.2509 1.4409 16 6 11.6474 -5.2503 1.4409 17 6 12.1578 -6.5601 0.8369 18 6 11.6479 -6.6921 -0.5995 19 1 12.0111 -7.6255 -1.0297 20 7 12.1358 -5.5640 -1.3966 21 6 13.3774 -5.6182 -1.9716 22 1 13.9967 -6.4927 -1.8378 23 6 13.8399 -4.5490 -2.7265 24 7 13.0853 -3.4829 -2.8892 25 14 15.5339 -4.6226 -3.5104 26 1 15.4256 -5.2134 -4.8685 27 1 16.0931 -3.2506 -3.6105 28 1 16.4297 -5.4625 -2.6753 29 6 10.1174 -6.6929 -0.5993 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 1.6959 -2.0072 0.0005 34 1 4.0095 -0.6529 0.8895 35 1 4.0089 -0.6540 -0.8905 36 1 6.1036 -2.0971 -0.0003 37 1 5.5983 -4.7292 -0.8905 38 1 5.5981 -4.7298 0.8894 39 1 7.6574 -6.2229 0.0087 40 1 9.7540 -4.3175 1.8711 41 1 9.7540 -6.0901 2.0340 42 1 12.0106 -5.1567 2.4644 43 1 12.0104 -4.4109 0.8479 44 1 11.7947 -7.3995 1.4300 45 1 13.2478 -6.5600 0.8373 46 1 11.5794 -4.7786 -1.5170 47 1 13.4087 -2.7357 -3.4164 48 1 9.7540 -7.5321 -0.0062 49 1 9.7540 -6.7870 -1.6227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714403131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:38 Heat of formation + Delta-G solvation = -110.343620 kcal Electronic energy + Delta-G solvation = -29234.439497 eV Core-core repulsion = 25003.152037 eV Total energy + Delta-G solvation = -4231.287461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71554 -40.03271 -39.30064 -38.10030 -35.10717 -34.74324 -34.49446 -33.11988 -31.08299 -30.96369 -29.94495 -28.59405 -27.97347 -26.26532 -23.68798 -22.10079 -21.90854 -21.04078 -20.97978 -20.56506 -18.92224 -18.24063 -17.39338 -17.08782 -16.93091 -16.54979 -16.18874 -15.98483 -15.77534 -15.31715 -14.98911 -14.64525 -14.46429 -14.09298 -13.88216 -13.63130 -13.60736 -13.47421 -13.31769 -13.08914 -12.97926 -12.81484 -12.40836 -12.30176 -12.08968 -11.80891 -11.44140 -10.94888 -10.85252 -10.76378 -10.50754 -10.36634 -10.32512 -10.23637 -10.12148 -10.05469 -9.67939 -9.62089 -9.53994 -9.52715 -9.00234 -8.82801 -6.95940 -5.75679 -3.04991 2.08283 2.24715 2.27705 2.49240 2.93650 3.27804 3.43243 3.48496 3.50422 4.19396 4.44588 4.52141 4.59016 4.80712 4.85680 4.97522 4.98502 5.01017 5.03023 5.05743 5.16785 5.40801 5.42188 5.57728 5.64534 5.67550 5.78440 5.82617 5.85339 5.87503 6.02579 6.05546 6.14024 6.29548 6.37787 6.56304 6.57997 6.75099 6.80653 6.97560 7.00599 7.07212 7.07579 7.41043 7.67643 7.70449 7.79802 8.10385 8.42202 9.53419 10.10419 10.44481 11.46462 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.001898 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.949898 B =14746.245650 C =15854.991430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.514 3.486 7 O -0.543 6.543 8 N -0.709 5.709 9 C 0.100 3.900 10 C 0.504 3.496 11 O -0.529 6.529 12 N -0.718 5.718 13 C 0.145 3.855 14 H 0.101 0.899 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.135 4.135 18 C 0.179 3.821 19 H 0.052 0.948 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.128 4.128 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.418 0.582 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.398 0.602 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.062 0.938 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.985 -2.448 9.218 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.424 6.424 4 N -0.376 5.376 5 C -0.029 4.029 6 C 0.300 3.700 7 O -0.420 6.420 8 N -0.365 5.365 9 C -0.028 4.028 10 C 0.288 3.712 11 O -0.405 6.405 12 N -0.368 5.368 13 C 0.041 3.959 14 H 0.119 0.881 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.364 5.364 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 C -0.167 4.167 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.256 0.744 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.232 0.768 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.470 -1.629 9.132 24.310 hybrid contribution 0.740 -0.308 -0.467 0.928 sum -21.730 -1.937 8.664 23.474 Atomic orbital electron populations 1.21863 0.91027 1.05126 1.04996 1.20866 0.90823 0.82990 0.75386 1.90756 1.70780 1.31379 1.49490 1.45824 1.05851 1.10046 1.75916 1.21038 0.82511 0.93852 1.05478 1.20471 0.82308 0.91278 0.75977 1.90701 1.55193 1.45914 1.50226 1.45593 1.07201 1.09036 1.74642 1.21114 0.91889 0.84816 1.04938 1.20395 0.89276 0.84711 0.76777 1.90769 1.69611 1.31004 1.49091 1.46078 1.08308 1.07835 1.74581 1.21137 0.76839 1.00604 0.97282 0.88126 1.21843 0.97159 1.01048 0.95797 1.21362 0.93432 1.00101 0.99911 1.22180 1.01165 0.95909 0.98325 1.20168 0.89539 0.92755 0.90731 0.93051 1.42495 1.17989 1.16850 1.59034 1.19217 0.92813 1.00863 1.24219 0.91211 1.24736 0.98371 0.96613 1.01146 1.69657 1.36904 1.06653 1.44630 0.86231 0.84208 0.76661 0.79305 1.21833 1.21850 1.20827 1.22093 0.98423 0.95458 1.00705 0.88650 0.88644 0.89945 0.74949 0.87952 0.87863 0.74360 0.88139 0.88235 0.76783 0.92329 0.92724 0.93241 0.90292 0.93873 0.91962 0.78082 0.93493 0.91960 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.30 36.01 0.37 -0.40 16 2 C 0.51 4.43 7.94 -10.98 -0.09 4.34 16 3 O -0.55 -7.11 17.10 5.56 0.09 -7.02 16 4 N -0.72 -5.54 5.53 -61.47 -0.34 -5.88 16 5 C 0.10 0.79 6.15 -5.19 -0.03 0.76 16 6 C 0.51 4.73 7.90 -10.98 -0.09 4.65 16 7 O -0.54 -6.16 15.67 5.56 0.09 -6.07 16 8 N -0.71 -6.54 5.53 -61.47 -0.34 -6.88 16 9 C 0.10 0.89 6.15 -5.19 -0.03 0.86 16 10 C 0.50 6.14 7.86 -10.98 -0.09 6.06 16 11 O -0.53 -8.68 15.33 5.56 0.09 -8.60 16 12 N -0.72 -8.07 5.08 -53.81 -0.27 -8.34 16 13 C 0.14 2.15 2.28 -67.93 -0.15 1.99 16 14 H 0.10 1.96 5.94 -51.93 -0.31 1.65 16 15 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 16 C -0.11 -1.82 5.77 -26.73 -0.15 -1.97 16 17 C -0.14 -2.26 5.61 -26.73 -0.15 -2.41 16 18 C 0.18 3.27 3.10 -67.91 -0.21 3.06 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -17.08 4.28 -53.40 -0.23 -17.31 16 21 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 25 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C -0.13 -1.86 5.08 -26.71 -0.14 -1.99 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.41 2.74 7.44 -40.82 -0.30 2.44 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.42 3.92 7.44 -40.82 -0.30 3.61 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.11 8.60 -40.82 -0.35 2.76 16 40 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.60 7.60 -51.93 -0.39 1.21 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.38 9.84 6.06 -40.82 -0.25 9.59 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -35.54 402.80 -8.09 -43.63 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -7.79 Total: 14.36 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.15 Total: 6.03 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.46 Total: -65.59 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.27 Total: -21.69 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.54 -8.09 -43.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714403131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.713 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds