Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99883 * 2 1 4 4 N 1.34777 * 119.99730 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99614 * 179.97438 * 4 2 1 6 6 C 1.50709 * 109.47001 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99753 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99700 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47128 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72554 * 10 9 8 13 13 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46738 * 324.99609 * 13 12 10 15 15 C 1.52993 * 109.47171 * 84.99494 * 13 12 10 16 16 C 1.53006 * 109.47028 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46628 * 299.99857 * 16 15 13 18 18 C 1.52992 * 109.46968 * 60.00493 * 17 16 15 19 19 H 1.09004 * 109.47346 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47849 * 59.99570 * 18 17 16 21 21 C 1.36935 * 119.99723 * 84.99513 * 20 18 17 22 22 H 1.07993 * 120.00191 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99655 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00677 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46786 * 89.99952 * 25 23 21 27 27 H 1.48498 * 109.47539 * 210.00265 * 25 23 21 28 28 H 1.48500 * 109.47188 * 330.00625 * 25 23 21 29 29 C 1.52994 * 109.46945 * 204.99736 * 13 12 10 30 30 H 1.08998 * 109.46798 * 270.00466 * 1 2 3 31 31 H 1.09001 * 109.46745 * 30.00046 * 1 2 3 32 32 H 1.08994 * 109.46953 * 149.99986 * 1 2 3 33 33 H 0.96996 * 119.99887 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47287 * 60.00702 * 5 4 2 35 35 H 1.09002 * 109.47320 * 300.00100 * 5 4 2 36 36 H 0.97005 * 119.99770 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.47786 * 60.00101 * 9 8 6 38 38 H 1.08998 * 109.47558 * 299.99963 * 9 8 6 39 39 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 40 40 H 1.09007 * 109.47428 * 300.00223 * 15 13 12 41 41 H 1.09000 * 109.47196 * 60.00395 * 15 13 12 42 42 H 1.09002 * 109.46733 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.47089 * 59.99987 * 16 15 13 44 44 H 1.09000 * 109.47491 * 299.99883 * 17 16 15 45 45 H 1.09002 * 109.46917 * 180.02562 * 17 16 15 46 46 H 0.96999 * 120.00159 * 265.00257 * 20 18 17 47 47 H 0.96993 * 120.00564 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.47299 * 299.99529 * 29 13 12 49 49 H 1.09006 * 109.47305 * 59.99718 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1482 -2.5881 0.0001 7 8 3.3601 -3.5099 0.0001 8 7 5.4733 -2.8344 0.0001 9 6 5.9615 -4.2156 -0.0003 10 6 7.4686 -4.2157 -0.0008 11 8 8.0750 -3.1653 -0.0012 12 7 8.1424 -5.3829 0.0044 13 6 9.6074 -5.3829 0.0045 14 1 9.9708 -4.5437 -0.5887 15 6 10.1173 -5.2509 1.4409 16 6 11.6474 -5.2503 1.4409 17 6 12.1578 -6.5601 0.8369 18 6 11.6479 -6.6921 -0.5995 19 1 12.0111 -7.6255 -1.0297 20 7 12.1358 -5.5640 -1.3966 21 6 13.3774 -5.6182 -1.9716 22 1 13.9967 -6.4927 -1.8378 23 6 13.8399 -4.5490 -2.7265 24 7 13.0853 -3.4829 -2.8892 25 14 15.5339 -4.6226 -3.5104 26 1 15.4256 -5.2134 -4.8685 27 1 16.0931 -3.2506 -3.6105 28 1 16.4297 -5.4625 -2.6753 29 6 10.1174 -6.6929 -0.5993 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 1.6959 -2.0072 0.0005 34 1 4.0095 -0.6529 0.8895 35 1 4.0089 -0.6540 -0.8905 36 1 6.1036 -2.0971 -0.0003 37 1 5.5983 -4.7292 -0.8905 38 1 5.5981 -4.7298 0.8894 39 1 7.6574 -6.2229 0.0087 40 1 9.7540 -4.3175 1.8711 41 1 9.7540 -6.0901 2.0340 42 1 12.0106 -5.1567 2.4644 43 1 12.0104 -4.4109 0.8479 44 1 11.7947 -7.3995 1.4300 45 1 13.2478 -6.5600 0.8373 46 1 11.5794 -4.7786 -1.5170 47 1 13.4087 -2.7357 -3.4164 48 1 9.7540 -7.5321 -0.0062 49 1 9.7540 -6.7870 -1.6227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714403131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -140.085037 kcal Electronic energy + Delta-G solvation = -29235.729182 eV Core-core repulsion = 25003.152037 eV Total energy + Delta-G solvation = -4232.577145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56109 -40.97123 -40.13873 -39.35461 -36.14921 -35.74389 -35.41165 -34.74515 -32.70604 -31.68455 -30.97207 -29.91298 -29.08648 -27.01439 -25.67183 -23.31778 -23.22341 -21.77881 -21.67181 -21.61463 -20.16676 -19.24912 -19.14881 -17.96732 -17.77720 -17.28782 -17.21665 -16.86589 -16.57754 -16.51824 -16.26486 -15.82995 -15.57896 -15.31985 -15.26302 -15.06772 -14.79426 -14.42710 -14.24174 -14.06095 -13.77910 -13.47471 -13.41255 -13.34113 -13.30510 -12.92113 -12.85560 -12.82795 -12.58838 -12.16386 -12.15154 -11.79877 -11.57844 -11.48603 -11.29473 -11.20566 -11.10257 -10.86794 -10.80392 -10.41812 -10.24163 -10.03005 -8.94478 -7.90555 -5.17586 1.34322 1.46328 1.47487 1.51880 1.53638 1.55748 1.59257 2.16417 2.50809 2.57852 3.42687 3.45994 3.63120 3.79885 3.93601 3.94626 4.09018 4.20311 4.22021 4.33191 4.33769 4.34376 4.38268 4.47192 4.55016 4.59858 4.68673 4.71062 4.77887 4.83725 5.01886 5.06501 5.09736 5.12547 5.22910 5.25429 5.31921 5.44409 5.46206 5.54034 5.64377 5.69198 6.25194 6.31711 6.47150 6.49609 6.91702 7.16722 7.20047 7.37504 8.17592 8.37390 9.32825 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.001898 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.949898 B =14746.245650 C =15854.991430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.507 3.493 3 O -0.598 6.598 4 N -0.713 5.713 5 C 0.098 3.902 6 C 0.522 3.478 7 O -0.561 6.561 8 N -0.712 5.712 9 C 0.109 3.891 10 C 0.503 3.497 11 O -0.577 6.577 12 N -0.702 5.702 13 C 0.152 3.848 14 H 0.046 0.954 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.166 3.834 19 H 0.053 0.947 20 N -0.733 5.733 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.967 3.033 26 H -0.289 1.289 27 H -0.302 1.302 28 H -0.269 1.269 29 C -0.115 4.115 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.420 0.580 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.416 0.584 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.420 0.580 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.371 0.629 47 H 0.247 0.753 48 H 0.110 0.890 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.835 -5.342 10.599 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.479 6.479 4 N -0.369 5.369 5 C -0.030 4.030 6 C 0.308 3.692 7 O -0.440 6.440 8 N -0.366 5.366 9 C -0.018 4.018 10 C 0.289 3.711 11 O -0.457 6.457 12 N -0.354 5.354 13 C 0.047 3.953 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.146 4.146 17 C -0.166 4.166 18 C 0.057 3.943 19 H 0.071 0.929 20 N -0.374 5.374 21 C -0.362 4.362 22 H 0.095 0.905 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.797 3.203 26 H -0.216 1.216 27 H -0.229 1.229 28 H -0.193 1.193 29 C -0.154 4.154 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.259 0.741 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.255 0.745 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.258 0.742 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.204 0.796 47 H 0.056 0.944 48 H 0.128 0.872 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.350 -4.649 10.545 26.939 hybrid contribution 1.298 0.503 -0.838 1.624 sum -23.052 -4.147 9.707 25.353 Atomic orbital electron populations 1.21900 0.87622 1.06324 1.06431 1.21642 0.92452 0.82223 0.74032 1.90733 1.72083 1.33057 1.52013 1.45848 1.05703 1.10272 1.75115 1.21045 0.82963 0.93195 1.05767 1.20506 0.81966 0.91353 0.75326 1.90690 1.55533 1.46493 1.51320 1.45654 1.07252 1.09284 1.74415 1.21157 0.88963 0.84975 1.06729 1.20965 0.90624 0.84021 0.75486 1.90764 1.70875 1.32816 1.51213 1.45804 1.06851 1.08832 1.73909 1.20761 0.78852 0.98846 0.96793 0.93611 1.21744 0.95292 1.01944 0.95769 1.21298 0.95207 0.98230 0.99855 1.22054 0.99684 0.97316 0.97573 1.20519 0.92314 0.90634 0.90825 0.92929 1.42723 1.16996 1.18044 1.59643 1.19642 0.93815 1.00355 1.22385 0.90477 1.25507 1.01967 0.96773 1.03033 1.69836 1.38692 1.07436 1.46384 0.85219 0.80462 0.76082 0.78505 1.21618 1.22909 1.19349 1.21965 0.95384 0.96721 1.01307 0.86950 0.88605 0.87571 0.74119 0.87504 0.87834 0.74526 0.86632 0.85841 0.74181 0.93629 0.88939 0.91543 0.95356 0.89607 0.94375 0.79635 0.94440 0.87185 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.30 71.24 0.73 -0.44 16 2 C 0.51 8.45 7.94 87.66 0.70 9.15 16 3 O -0.60 -15.82 17.10 -3.04 -0.05 -15.87 16 4 N -0.71 -10.32 5.53 -466.77 -2.58 -12.90 16 5 C 0.10 1.52 6.15 85.64 0.53 2.05 16 6 C 0.52 9.02 7.90 87.66 0.69 9.71 16 7 O -0.56 -11.70 15.67 -3.03 -0.05 -11.75 16 8 N -0.71 -12.45 5.53 -466.78 -2.58 -15.03 16 9 C 0.11 1.72 6.15 85.64 0.53 2.24 16 10 C 0.50 11.79 7.86 87.66 0.69 12.48 16 11 O -0.58 -19.55 15.33 -3.04 -0.05 -19.59 16 12 N -0.70 -14.34 5.08 -442.54 -2.25 -16.59 16 13 C 0.15 4.38 2.28 44.99 0.10 4.48 16 14 H 0.05 1.87 5.94 -2.39 -0.01 1.86 16 15 C -0.11 -2.95 5.49 30.59 0.17 -2.78 16 16 C -0.11 -3.50 5.77 30.60 0.18 -3.32 16 17 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 18 C 0.17 5.86 3.10 45.01 0.14 6.00 16 19 H 0.05 1.86 8.08 -2.38 -0.02 1.84 16 20 N -0.73 -35.59 4.28 -322.87 -1.38 -36.97 16 21 C -0.23 -12.54 9.93 84.03 0.83 -11.71 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 24 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 25 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 27 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 29 C -0.12 -3.06 5.08 30.61 0.16 -2.91 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.42 4.93 7.44 -92.71 -0.69 4.24 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.42 7.86 7.44 -92.70 -0.69 7.17 16 37 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.42 4.95 8.60 -92.71 -0.80 4.15 16 40 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.03 1.19 7.60 -2.39 -0.02 1.18 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.37 20.01 6.06 -92.71 -0.56 19.45 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -82.29 402.80 -2.28 -84.57 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -1.73 Total: 39.09 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.08 Total: 16.93 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -8.51 Total: -142.18 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.15 Total: -47.22 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -82.29 -2.28 -84.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714403131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.515 kcal (2) G-P(sol) polarization free energy of solvation -82.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds