Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99910 * 2 1 4 4 N 1.34779 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99793 * 180.02562 * 4 2 1 6 6 C 1.50700 * 109.47255 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99817 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99944 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00201 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 16 16 C 1.52996 * 109.47328 * 300.00366 * 15 13 12 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 13 18 18 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 19 19 H 1.09001 * 109.47375 * 59.99908 * 18 17 16 20 20 N 1.46504 * 109.47417 * 179.97438 * 18 17 16 21 21 C 1.36937 * 119.99777 * 275.00036 * 20 18 17 22 22 H 1.08003 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99952 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00459 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47004 * 90.00083 * 25 23 21 27 27 H 1.48494 * 109.47363 * 210.00166 * 25 23 21 28 28 H 1.48501 * 109.46761 * 330.00386 * 25 23 21 29 29 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 30 30 H 1.09001 * 109.47288 * 269.99440 * 1 2 3 31 31 H 1.08999 * 109.47290 * 29.99692 * 1 2 3 32 32 H 1.09007 * 109.46923 * 149.99644 * 1 2 3 33 33 H 0.96995 * 119.99934 * 359.97438 * 4 2 1 34 34 H 1.09002 * 109.47216 * 59.99879 * 5 4 2 35 35 H 1.08993 * 109.47187 * 300.00205 * 5 4 2 36 36 H 0.96999 * 120.00090 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47130 * 60.00309 * 9 8 6 38 38 H 1.09002 * 109.47270 * 299.99946 * 9 8 6 39 39 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46724 * 60.00549 * 15 13 12 41 41 H 1.09001 * 109.47194 * 179.97438 * 15 13 12 42 42 H 1.09004 * 109.47108 * 179.97438 * 16 15 13 43 43 H 1.08992 * 109.47554 * 59.99639 * 16 15 13 44 44 H 1.09001 * 109.47142 * 300.00176 * 17 16 15 45 45 H 1.09002 * 109.47097 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00148 * 94.99044 * 20 18 17 47 47 H 0.96993 * 120.00181 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.47533 * 179.97438 * 29 13 12 49 49 H 1.08996 * 109.47853 * 300.00060 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1483 -2.5880 -0.0001 7 8 3.3601 -3.5098 -0.0011 8 7 5.4733 -2.8343 -0.0001 9 6 5.9616 -4.2155 -0.0008 10 6 7.4687 -4.2154 -0.0001 11 8 8.0750 -3.1651 0.0004 12 7 8.1425 -5.3826 -0.0011 13 6 9.6075 -5.3826 -0.0010 14 1 9.9708 -4.5413 0.5892 15 6 10.1176 -5.2557 -1.4379 16 6 9.6077 -6.4366 -2.2663 17 6 10.1177 -7.7445 -1.6577 18 6 9.6076 -7.8714 -0.2209 19 1 8.5176 -7.8715 -0.2210 20 7 10.0954 -9.1240 0.3617 21 6 9.4073 -10.2895 0.1536 22 1 8.5047 -10.2852 -0.4396 23 6 9.8697 -11.4764 0.7051 24 7 10.9693 -11.4816 1.4285 25 14 8.9307 -13.0663 0.4220 26 1 9.4381 -13.7288 -0.8064 27 1 9.1220 -13.9682 1.5859 28 1 7.4854 -12.7655 0.2611 29 6 10.1175 -6.6905 0.6076 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6959 -2.0072 -0.0005 34 1 4.0089 -0.6539 0.8905 35 1 4.0095 -0.6528 -0.8894 36 1 6.1037 -2.0970 0.0003 37 1 5.5984 -4.7289 -0.8911 38 1 5.5983 -4.7298 0.8889 39 1 7.6575 -6.2227 -0.0019 40 1 9.7543 -4.3239 -1.8714 41 1 11.2076 -5.2552 -1.4378 42 1 9.9707 -6.3459 -3.2901 43 1 8.5178 -6.4367 -2.2664 44 1 11.2077 -7.7444 -1.6577 45 1 9.7548 -8.5858 -2.2482 46 1 10.9058 -9.1278 0.8946 47 1 11.2923 -12.3109 1.8142 48 1 11.2075 -6.6907 0.6073 49 1 9.7541 -6.7810 1.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714403132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -112.268272 kcal Electronic energy + Delta-G solvation = -29145.595301 eV Core-core repulsion = 24914.224382 eV Total energy + Delta-G solvation = -4231.370920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80753 -40.20403 -39.39009 -38.12212 -35.13855 -34.76760 -34.53164 -33.22073 -31.24933 -31.09160 -30.17024 -28.69331 -27.92415 -26.37798 -23.80425 -22.25953 -21.51382 -21.08628 -21.02897 -20.98186 -18.96340 -18.62599 -17.40583 -17.06563 -17.03497 -16.61159 -16.15251 -16.04520 -15.89193 -15.36006 -15.07396 -14.97694 -14.49376 -14.19864 -14.08299 -13.73622 -13.54484 -13.50512 -13.30562 -13.12059 -13.01081 -12.85715 -12.50487 -12.39332 -12.14278 -11.99658 -11.83428 -11.06664 -10.93362 -10.86943 -10.54174 -10.47848 -10.41669 -10.28222 -10.24191 -10.12493 -9.83055 -9.72760 -9.60613 -9.58106 -9.11033 -8.93191 -7.03925 -5.83695 -3.13094 2.04074 2.19916 2.21784 2.36156 2.88178 3.22281 3.38329 3.43720 3.45393 4.13704 4.39949 4.45650 4.51896 4.77289 4.79567 4.91212 4.93147 4.94568 4.97088 5.02226 5.03435 5.07893 5.37858 5.40870 5.48846 5.60134 5.65585 5.74491 5.79311 5.82510 5.88060 5.96550 6.00163 6.13134 6.19748 6.39641 6.46308 6.50944 6.62781 6.85423 6.94545 7.00113 7.02889 7.32631 7.62331 7.63181 7.74713 7.96740 8.34519 9.45947 10.02721 10.36884 11.38700 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.001883 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.044295 B =14863.862103 C =16139.868108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.720 5.720 5 C 0.100 3.900 6 C 0.512 3.488 7 O -0.538 6.538 8 N -0.710 5.710 9 C 0.097 3.903 10 C 0.509 3.491 11 O -0.545 6.545 12 N -0.709 5.709 13 C 0.152 3.848 14 H 0.086 0.914 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.180 3.820 19 H 0.041 0.959 20 N -0.724 5.724 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.134 4.134 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.416 0.584 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.407 0.593 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 20.477 -3.949 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.376 5.376 5 C -0.028 4.028 6 C 0.298 3.702 7 O -0.415 6.415 8 N -0.366 5.366 9 C -0.030 4.030 10 C 0.294 3.706 11 O -0.423 6.423 12 N -0.361 5.361 13 C 0.047 3.953 14 H 0.104 0.896 15 C -0.166 4.166 16 C -0.154 4.154 17 C -0.178 4.178 18 C 0.070 3.930 19 H 0.059 0.941 20 N -0.365 5.365 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.173 4.173 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.254 0.746 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.244 0.756 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.989 21.129 -3.959 25.648 hybrid contribution -0.184 -1.616 -0.032 1.627 sum -14.173 19.513 -3.991 24.445 Atomic orbital electron populations 1.21868 0.90981 1.05147 1.05069 1.20866 0.90843 0.82953 0.75293 1.90744 1.70810 1.31402 1.49641 1.45838 1.05839 1.10113 1.75857 1.21021 0.82596 0.93836 1.05318 1.20480 0.82341 0.91289 0.76124 1.90729 1.55135 1.45858 1.49790 1.45560 1.07142 1.08909 1.74939 1.21140 0.91732 0.84757 1.05392 1.20383 0.89396 0.84492 0.76323 1.90687 1.69849 1.31210 1.50564 1.46135 1.08100 1.08343 1.73540 1.21016 0.78299 0.99091 0.96868 0.89626 1.21900 1.01033 0.98581 0.95076 1.21509 1.00282 0.95221 0.98372 1.22298 1.00855 0.95556 0.99087 1.20149 0.96188 0.86048 0.90601 0.94073 1.42414 1.30498 1.02380 1.61173 1.19209 1.05445 0.85913 1.26656 0.91205 1.24744 0.97825 0.97853 1.00406 1.69656 1.23256 1.26529 1.38509 0.86217 0.79126 0.83806 0.77181 1.21734 1.21778 1.20751 1.22142 1.01842 0.93277 1.00034 0.88593 0.88645 0.89897 0.74854 0.88017 0.87997 0.74604 0.87948 0.87897 0.75627 0.92092 0.90996 0.92786 0.92663 0.92515 0.92012 0.78232 0.93470 0.90374 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.30 36.01 0.37 -0.34 16 2 C 0.51 4.15 7.94 -10.98 -0.09 4.06 16 3 O -0.55 -6.71 17.10 5.56 0.10 -6.61 16 4 N -0.72 -5.19 5.53 -61.47 -0.34 -5.53 16 5 C 0.10 0.71 6.15 -5.19 -0.03 0.68 16 6 C 0.51 4.41 7.90 -10.99 -0.09 4.32 16 7 O -0.54 -6.10 15.67 5.56 0.09 -6.02 16 8 N -0.71 -5.81 5.53 -61.47 -0.34 -6.14 16 9 C 0.10 0.84 6.15 -5.19 -0.03 0.80 16 10 C 0.51 5.43 7.86 -10.98 -0.09 5.34 16 11 O -0.54 -7.21 15.33 5.56 0.09 -7.12 16 12 N -0.71 -7.67 4.23 -53.81 -0.23 -7.90 16 13 C 0.15 1.84 2.78 -67.93 -0.19 1.66 16 14 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 15 C -0.13 -1.52 5.60 -26.73 -0.15 -1.67 16 16 C -0.12 -1.47 5.77 -26.73 -0.15 -1.62 16 17 C -0.14 -2.21 5.50 -26.73 -0.15 -2.36 16 18 C 0.18 3.12 2.60 -67.93 -0.18 2.94 16 19 H 0.04 0.70 6.44 -51.93 -0.33 0.37 16 20 N -0.72 -16.78 5.12 -53.42 -0.27 -17.05 16 21 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 22 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C -0.13 -1.92 5.08 -26.73 -0.14 -2.06 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.41 2.66 7.44 -40.82 -0.30 2.35 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.42 3.17 7.44 -40.82 -0.30 2.87 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.41 4.16 6.87 -40.82 -0.28 3.88 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.67 7.60 -51.93 -0.39 0.28 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -34.15 402.80 -8.09 -42.24 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.79 Total: 13.03 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.15 Total: 4.87 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.46 Total: -63.11 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.27 Total: -19.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.15 -8.09 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714403132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.029 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds