Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99910 * 2 1 4 4 N 1.34779 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99793 * 180.02562 * 4 2 1 6 6 C 1.50700 * 109.47255 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99817 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99944 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00201 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 16 16 C 1.52996 * 109.47328 * 300.00366 * 15 13 12 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 13 18 18 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 19 19 H 1.09001 * 109.47375 * 59.99908 * 18 17 16 20 20 N 1.46504 * 109.47417 * 179.97438 * 18 17 16 21 21 C 1.36937 * 119.99777 * 275.00036 * 20 18 17 22 22 H 1.08003 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99952 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00459 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47004 * 90.00083 * 25 23 21 27 27 H 1.48494 * 109.47363 * 210.00166 * 25 23 21 28 28 H 1.48501 * 109.46761 * 330.00386 * 25 23 21 29 29 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 30 30 H 1.09001 * 109.47288 * 269.99440 * 1 2 3 31 31 H 1.08999 * 109.47290 * 29.99692 * 1 2 3 32 32 H 1.09007 * 109.46923 * 149.99644 * 1 2 3 33 33 H 0.96995 * 119.99934 * 359.97438 * 4 2 1 34 34 H 1.09002 * 109.47216 * 59.99879 * 5 4 2 35 35 H 1.08993 * 109.47187 * 300.00205 * 5 4 2 36 36 H 0.96999 * 120.00090 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47130 * 60.00309 * 9 8 6 38 38 H 1.09002 * 109.47270 * 299.99946 * 9 8 6 39 39 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46724 * 60.00549 * 15 13 12 41 41 H 1.09001 * 109.47194 * 179.97438 * 15 13 12 42 42 H 1.09004 * 109.47108 * 179.97438 * 16 15 13 43 43 H 1.08992 * 109.47554 * 59.99639 * 16 15 13 44 44 H 1.09001 * 109.47142 * 300.00176 * 17 16 15 45 45 H 1.09002 * 109.47097 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00148 * 94.99044 * 20 18 17 47 47 H 0.96993 * 120.00181 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.47533 * 179.97438 * 29 13 12 49 49 H 1.08996 * 109.47853 * 300.00060 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1483 -2.5880 -0.0001 7 8 3.3601 -3.5098 -0.0011 8 7 5.4733 -2.8343 -0.0001 9 6 5.9616 -4.2155 -0.0008 10 6 7.4687 -4.2154 -0.0001 11 8 8.0750 -3.1651 0.0004 12 7 8.1425 -5.3826 -0.0011 13 6 9.6075 -5.3826 -0.0010 14 1 9.9708 -4.5413 0.5892 15 6 10.1176 -5.2557 -1.4379 16 6 9.6077 -6.4366 -2.2663 17 6 10.1177 -7.7445 -1.6577 18 6 9.6076 -7.8714 -0.2209 19 1 8.5176 -7.8715 -0.2210 20 7 10.0954 -9.1240 0.3617 21 6 9.4073 -10.2895 0.1536 22 1 8.5047 -10.2852 -0.4396 23 6 9.8697 -11.4764 0.7051 24 7 10.9693 -11.4816 1.4285 25 14 8.9307 -13.0663 0.4220 26 1 9.4381 -13.7288 -0.8064 27 1 9.1220 -13.9682 1.5859 28 1 7.4854 -12.7655 0.2611 29 6 10.1175 -6.6905 0.6076 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6959 -2.0072 -0.0005 34 1 4.0089 -0.6539 0.8905 35 1 4.0095 -0.6528 -0.8894 36 1 6.1037 -2.0970 0.0003 37 1 5.5984 -4.7289 -0.8911 38 1 5.5983 -4.7298 0.8889 39 1 7.6575 -6.2227 -0.0019 40 1 9.7543 -4.3239 -1.8714 41 1 11.2076 -5.2552 -1.4378 42 1 9.9707 -6.3459 -3.2901 43 1 8.5178 -6.4367 -2.2664 44 1 11.2077 -7.7444 -1.6577 45 1 9.7548 -8.5858 -2.2482 46 1 10.9058 -9.1278 0.8946 47 1 11.2923 -12.3109 1.8142 48 1 11.2075 -6.6907 0.6073 49 1 9.7541 -6.7810 1.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714403132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -139.501540 kcal Electronic energy + Delta-G solvation = -29146.776224 eV Core-core repulsion = 24914.224382 eV Total energy + Delta-G solvation = -4232.551843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60853 -41.03539 -40.14488 -39.22988 -36.22896 -35.74903 -35.41450 -34.49506 -32.92332 -31.69735 -31.11959 -29.71061 -29.17926 -27.04063 -25.66641 -23.39447 -22.63294 -22.15701 -21.74461 -21.64310 -20.12596 -19.41703 -19.05118 -17.91448 -17.80236 -17.30510 -17.05242 -16.87431 -16.69572 -16.54929 -16.15594 -15.91841 -15.77654 -15.28818 -15.10778 -14.90563 -14.84051 -14.38433 -14.24703 -14.05392 -13.87669 -13.58110 -13.36254 -13.30606 -13.11134 -13.01482 -12.91489 -12.89624 -12.77384 -12.22523 -12.04354 -11.93889 -11.59067 -11.45533 -11.28751 -11.11088 -11.03709 -10.99061 -10.83082 -10.41559 -10.23209 -10.04569 -8.97056 -7.91892 -5.19404 1.35882 1.48974 1.49359 1.50505 1.53899 1.57495 1.59635 2.18963 2.52209 2.57615 3.41864 3.47407 3.59737 3.74532 3.89448 3.93926 3.94962 4.23090 4.31326 4.32070 4.33620 4.34440 4.36542 4.37996 4.55065 4.57181 4.67779 4.68550 4.73696 4.82998 4.95600 5.07223 5.09721 5.12811 5.19608 5.25463 5.26222 5.38522 5.47451 5.53064 5.56900 5.67543 6.28317 6.30607 6.44642 6.46858 6.95338 7.09733 7.16345 7.36983 8.14442 8.35542 9.31523 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.001883 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.044295 B =14863.862103 C =16139.868108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.596 6.596 4 N -0.716 5.716 5 C 0.100 3.900 6 C 0.518 3.482 7 O -0.565 6.565 8 N -0.706 5.706 9 C 0.101 3.899 10 C 0.515 3.485 11 O -0.569 6.569 12 N -0.707 5.707 13 C 0.161 3.839 14 H 0.087 0.913 15 C -0.121 4.121 16 C -0.105 4.105 17 C -0.129 4.129 18 C 0.176 3.824 19 H 0.049 0.951 20 N -0.738 5.738 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.966 3.034 26 H -0.291 1.291 27 H -0.300 1.300 28 H -0.268 1.268 29 C -0.122 4.122 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.419 0.581 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.419 0.581 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.411 0.589 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.371 0.629 47 H 0.248 0.752 48 H 0.076 0.924 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 21.406 -4.812 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.371 5.371 5 C -0.027 4.027 6 C 0.305 3.695 7 O -0.444 6.444 8 N -0.361 5.361 9 C -0.026 4.026 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.359 5.359 13 C 0.056 3.944 14 H 0.105 0.895 15 C -0.160 4.160 16 C -0.143 4.143 17 C -0.169 4.169 18 C 0.067 3.933 19 H 0.067 0.933 20 N -0.377 5.377 21 C -0.364 4.364 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.219 1.219 27 H -0.227 1.227 28 H -0.192 1.192 29 C -0.161 4.161 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.257 0.743 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.258 0.742 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.249 0.751 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.203 0.797 47 H 0.057 0.943 48 H 0.094 0.906 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.786 22.075 -4.857 27.570 hybrid contribution 0.369 -1.844 0.211 1.892 sum -15.417 20.230 -4.645 25.856 Atomic orbital electron populations 1.21906 0.87891 1.06292 1.06356 1.21567 0.92341 0.82232 0.74037 1.90721 1.72017 1.32938 1.52035 1.45884 1.05923 1.10241 1.75097 1.21058 0.82776 0.92901 1.05987 1.20617 0.82098 0.91448 0.75334 1.90718 1.55744 1.46732 1.51230 1.45548 1.07133 1.08942 1.74480 1.21142 0.90037 0.85155 1.06289 1.20620 0.90084 0.83817 0.75365 1.90685 1.70538 1.31990 1.51637 1.46067 1.07540 1.08760 1.73540 1.20836 0.79129 0.97479 0.96962 0.89544 1.21853 1.01385 0.98285 0.94469 1.21414 1.00785 0.93310 0.98813 1.22122 1.00119 0.96827 0.97849 1.20406 0.96604 0.84809 0.91448 0.93275 1.42647 1.29967 1.03669 1.61393 1.19607 1.05143 0.86879 1.24794 0.90425 1.25487 0.99073 1.00955 1.01406 1.69807 1.25141 1.26656 1.40492 0.85242 0.78654 0.80145 0.76363 1.21878 1.22674 1.19229 1.21974 1.01708 0.93151 0.99242 0.87103 0.88497 0.87744 0.74252 0.87390 0.87284 0.74166 0.86850 0.87141 0.75133 0.91522 0.90527 0.91579 0.91701 0.93576 0.94157 0.79698 0.94270 0.90583 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.30 71.24 0.73 -0.33 16 2 C 0.51 7.72 7.94 87.66 0.70 8.42 16 3 O -0.60 -14.44 17.10 -3.03 -0.05 -14.49 16 4 N -0.72 -9.41 5.53 -466.79 -2.58 -11.99 16 5 C 0.10 1.31 6.15 85.63 0.53 1.83 16 6 C 0.52 8.13 7.90 87.66 0.69 8.83 16 7 O -0.57 -11.94 15.67 -3.03 -0.05 -11.99 16 8 N -0.71 -10.29 5.53 -466.78 -2.58 -12.87 16 9 C 0.10 1.52 6.15 85.63 0.53 2.05 16 10 C 0.51 9.89 7.86 87.66 0.69 10.58 16 11 O -0.57 -13.94 15.33 -3.03 -0.05 -13.99 16 12 N -0.71 -13.77 4.23 -442.53 -1.87 -15.65 16 13 C 0.16 3.61 2.78 44.99 0.13 3.73 16 14 H 0.09 2.01 7.58 -2.39 -0.02 2.00 16 15 C -0.12 -2.61 5.60 30.59 0.17 -2.44 16 16 C -0.11 -2.42 5.77 30.59 0.18 -2.25 16 17 C -0.13 -4.01 5.50 30.59 0.17 -3.84 16 18 C 0.18 5.91 2.60 44.99 0.12 6.03 16 19 H 0.05 1.59 6.44 -2.39 -0.02 1.58 16 20 N -0.74 -34.26 5.12 -322.93 -1.65 -35.92 16 21 C -0.23 -12.12 9.93 84.03 0.83 -11.28 16 22 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 24 N -0.97 -57.82 13.06 21.65 0.28 -57.53 16 25 Si 0.97 44.79 29.55 68.60 2.03 46.81 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 C -0.12 -3.37 5.08 30.60 0.16 -3.22 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.42 4.74 7.44 -92.71 -0.69 4.05 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 5.71 7.44 -92.71 -0.69 5.02 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.41 7.47 6.87 -92.71 -0.64 6.84 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.06 1.39 7.60 -2.39 -0.02 1.37 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.37 18.92 7.80 -92.71 -0.72 18.19 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -73.55 402.80 -2.18 -75.73 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -1.74 Total: 37.58 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 6.08 Total: 14.30 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -8.40 Total: -133.96 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.15 Total: -40.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.55 -2.18 -75.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714403132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.771 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds