Wall clock time and date at job start Sat Apr 11 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.46506 * 119.99968 * 180.02562 * 4 2 1 6 6 C 1.50690 * 109.47072 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00549 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00144 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.62534 * 359.97438 * 8 6 5 10 10 C 1.53197 * 108.77200 * 126.37491 * 9 8 6 11 11 C 1.53037 * 109.31406 * 54.63338 * 10 9 8 12 12 C 1.53038 * 109.53903 * 298.63548 * 11 10 9 13 13 H 1.09003 * 109.49791 * 301.38172 * 12 11 10 14 14 N 1.46900 * 109.49916 * 181.32102 * 12 11 10 15 15 C 1.46896 * 110.99646 * 298.95076 * 14 12 11 16 16 C 1.46900 * 110.99846 * 174.99907 * 14 12 11 17 17 C 1.50697 * 109.46969 * 189.99437 * 16 14 12 18 18 O 1.21293 * 120.00233 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00071 * 180.02562 * 17 16 14 20 20 C 1.37101 * 120.00082 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99786 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00284 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99512 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47116 * 60.00216 * 24 22 20 26 26 H 1.48506 * 109.46957 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47118 * 300.00134 * 24 22 20 28 28 C 1.46918 * 120.63462 * 179.72250 * 8 6 5 29 29 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 31 31 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 4 2 1 33 33 H 1.09004 * 109.46587 * 299.99661 * 5 4 2 34 34 H 1.08998 * 109.47213 * 59.99069 * 5 4 2 35 35 H 1.09001 * 109.58573 * 246.15696 * 9 8 6 36 36 H 1.08997 * 109.58835 * 6.58423 * 9 8 6 37 37 H 1.09001 * 109.49435 * 174.58748 * 10 9 8 38 38 H 1.08998 * 109.49233 * 294.64766 * 10 9 8 39 39 H 1.08997 * 109.45852 * 58.65561 * 11 10 9 40 40 H 1.09004 * 109.45933 * 178.61607 * 11 10 9 41 41 H 1.09003 * 109.47021 * 60.00266 * 15 14 12 42 42 H 1.09003 * 109.47380 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.47730 * 300.00211 * 15 14 12 44 44 H 1.08998 * 109.47370 * 309.99969 * 16 14 12 45 45 H 1.08999 * 109.47174 * 70.00333 * 16 14 12 46 46 H 0.96998 * 120.00305 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99290 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58505 * 353.41543 * 28 8 6 49 49 H 1.08996 * 109.58989 * 113.83884 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.6460 -1.1671 0.0061 6 6 4.1483 -2.5878 0.0134 7 8 3.3603 -3.5097 0.0182 8 7 5.4734 -2.8341 0.0146 9 6 6.4403 -1.7279 0.0083 10 6 7.4126 -1.9163 1.1772 11 6 8.0470 -3.3061 1.0888 12 6 6.9559 -4.3743 1.1912 13 1 6.4198 -4.2576 2.1331 14 7 7.5689 -5.7082 1.1381 15 6 8.2793 -5.9108 -0.1316 16 6 6.5642 -6.7582 1.3526 17 6 7.2554 -8.0847 1.5361 18 8 8.4658 -8.1490 1.4930 19 7 6.5285 -9.1997 1.7482 20 6 7.1573 -10.4064 1.9157 21 1 8.2351 -10.4636 1.8773 22 6 6.4079 -11.5558 2.1349 23 7 5.0965 -11.4862 2.1811 24 14 7.2647 -13.2001 2.3624 25 1 8.1663 -13.1297 3.5402 26 1 6.2490 -14.2617 2.5786 27 1 8.0597 -13.5161 1.1486 28 6 5.9784 -4.2137 0.0278 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.6960 -2.0072 0.0099 33 1 4.0096 -0.6573 -0.8861 34 1 4.0090 -0.6491 0.8938 35 1 6.9933 -1.7312 -0.9310 36 1 5.9128 -0.7807 0.1209 37 1 8.1926 -1.1565 1.1276 38 1 6.8719 -1.8218 2.1189 39 1 8.5667 -3.4082 0.1362 40 1 8.7577 -3.4335 1.9055 41 1 9.0642 -5.1611 -0.2324 42 1 8.7241 -6.9059 -0.1444 43 1 7.5774 -5.8155 -0.9600 44 1 5.9806 -6.5262 2.2435 45 1 5.9025 -6.8100 0.4880 46 1 5.5605 -9.1483 1.7831 47 1 4.5734 -12.2887 2.3338 48 1 5.1461 -4.9063 0.1532 49 1 6.4929 -4.4235 -0.9099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714430621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:48 Heat of formation + Delta-G solvation = -93.508802 kcal Electronic energy + Delta-G solvation = -30067.792772 eV Core-core repulsion = 25837.235324 eV Total energy + Delta-G solvation = -4230.557448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93060 -39.81847 -38.86002 -37.80105 -35.85686 -34.83410 -33.87223 -32.76192 -31.24215 -31.07473 -30.09177 -28.08508 -27.53496 -25.56366 -25.08595 -24.16651 -22.29320 -21.03375 -20.40782 -19.33459 -19.08066 -17.94182 -17.82460 -17.11519 -16.58536 -16.38144 -16.17389 -15.62614 -15.39530 -15.11467 -14.90054 -14.76437 -14.47163 -14.13221 -14.05730 -13.76806 -13.71751 -13.44359 -13.12100 -13.05492 -13.04963 -12.95523 -12.74438 -12.40402 -12.11329 -11.65899 -11.51909 -11.39957 -11.34215 -11.18310 -11.00343 -10.87073 -10.56679 -10.43635 -10.36380 -10.25962 -10.20038 -9.60533 -9.46244 -9.19551 -8.42414 -7.96663 -7.81226 -6.40556 -3.81545 2.14161 2.25596 2.33637 2.96214 3.20421 3.26192 3.30351 3.87678 3.91995 3.96632 4.22686 4.43173 4.54403 4.58900 4.61544 4.75012 4.83134 4.84376 4.93797 4.98909 5.00010 5.10608 5.16619 5.22462 5.29008 5.41615 5.43133 5.46041 5.56438 5.64381 5.72155 5.75432 5.87322 5.91978 5.95033 6.04902 6.08654 6.14248 6.28597 6.53148 6.94571 7.08672 7.21669 7.33395 7.55848 7.69143 7.79865 8.06859 8.62599 9.18774 9.55368 10.07036 10.77062 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.002240 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.323960 B =12497.115611 C =14126.086337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.721 5.721 5 C 0.101 3.899 6 C 0.508 3.492 7 O -0.535 6.535 8 N -0.601 5.601 9 C 0.101 3.899 10 C -0.134 4.134 11 C -0.113 4.113 12 C 0.072 3.928 13 H 0.085 0.915 14 N -0.504 5.504 15 C 0.014 3.986 16 C 0.042 3.958 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.074 3.926 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.414 0.586 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.017 0.983 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.096 0.904 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 23.343 -5.402 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.428 6.428 4 N -0.377 5.377 5 C -0.027 4.027 6 C 0.296 3.704 7 O -0.412 6.412 8 N -0.335 5.335 9 C -0.022 4.022 10 C -0.172 4.172 11 C -0.151 4.151 12 C -0.038 4.038 13 H 0.103 0.897 14 N -0.226 5.226 15 C -0.134 4.134 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.050 4.050 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.252 0.748 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.036 0.964 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.106 23.331 -5.016 24.215 hybrid contribution -1.031 -1.216 -0.496 1.670 sum -5.137 22.114 -5.512 23.363 Atomic orbital electron populations 1.21904 0.90992 1.05671 1.04686 1.20861 0.90856 0.82932 0.75244 1.90728 1.70916 1.31403 1.49751 1.45840 1.05936 1.10149 1.75749 1.21092 0.82504 0.94391 1.04676 1.20499 0.82465 0.91070 0.76409 1.90724 1.54586 1.45883 1.50045 1.47994 1.05025 1.07797 1.72664 1.21909 0.91320 0.89170 0.99772 1.21923 0.98786 0.98097 0.98421 1.21600 0.97735 0.92351 1.03404 1.22058 0.93922 0.90030 0.97749 0.89724 1.61894 1.26302 0.99544 1.34893 1.22654 0.97591 1.05035 0.88101 1.21912 0.93506 0.92072 1.01421 1.19685 0.88070 0.84741 0.84539 1.90480 1.13794 1.85984 1.56004 1.41865 1.09160 1.06265 1.62703 1.19642 0.93799 0.83423 1.46012 0.87958 1.25270 0.95437 0.99899 0.97371 1.69613 1.04564 1.30443 1.49639 0.85917 0.78525 0.80700 0.79060 1.19890 1.20996 1.19936 1.22493 0.99340 0.82522 1.00595 0.88752 0.89145 0.89085 0.74817 0.88400 0.88289 0.90679 0.89514 0.90040 0.91157 0.91348 0.90197 0.91787 0.88424 0.96414 0.89399 0.93269 0.77465 0.91815 0.88600 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.32 36.01 0.37 -0.50 16 2 C 0.51 4.56 7.94 -10.98 -0.09 4.47 16 3 O -0.55 -6.95 17.09 5.56 0.09 -6.86 16 4 N -0.72 -6.05 5.53 -61.47 -0.34 -6.39 16 5 C 0.10 0.83 4.50 -5.20 -0.02 0.80 16 6 C 0.51 5.33 7.77 -10.99 -0.09 5.24 16 7 O -0.54 -7.44 15.08 5.56 0.08 -7.36 16 8 N -0.60 -5.71 2.98 -173.02 -0.52 -6.23 16 9 C 0.10 0.65 6.34 -3.71 -0.02 0.62 16 10 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 11 C -0.11 -1.07 4.92 -26.69 -0.13 -1.20 16 12 C 0.07 0.87 2.36 -67.80 -0.16 0.71 16 13 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 14 N -0.50 -7.99 4.49 -236.44 -1.06 -9.05 16 15 C 0.01 0.21 8.46 60.06 0.51 0.72 16 16 C 0.04 0.75 4.89 -4.98 -0.02 0.73 16 17 C 0.44 10.43 7.47 -10.99 -0.08 10.35 16 18 O -0.58 -15.34 13.91 5.55 0.08 -15.26 16 19 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.07 0.86 5.01 -3.92 -0.02 0.84 16 29 H 0.09 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.41 3.32 7.44 -40.82 -0.30 3.01 16 33 H 0.10 0.71 7.94 -51.93 -0.41 0.30 16 34 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.40 5.93 -51.93 -0.31 0.09 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.63 6.50 -51.93 -0.34 0.29 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 42 H 0.10 1.86 5.83 -51.93 -0.30 1.56 16 43 H 0.02 0.24 6.17 -51.93 -0.32 -0.08 16 44 H 0.09 1.47 8.00 -51.93 -0.42 1.06 16 45 H 0.05 0.83 7.08 -51.93 -0.37 0.46 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.10 1.33 5.92 -51.93 -0.31 1.02 16 49 H 0.07 0.86 6.11 -51.93 -0.32 0.54 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -34.88 388.87 -7.65 -42.53 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.33 Total: 11.30 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -0.16 Total: 13.74 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -1.25 Total: -60.05 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: 0.26 Total: -29.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.88 -7.65 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714430621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.981 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds