Wall clock time and date at job start Sat Apr 11 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.46506 * 119.99968 * 180.02562 * 4 2 1 6 6 C 1.50690 * 109.47072 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00549 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00144 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.62534 * 359.97438 * 8 6 5 10 10 C 1.53197 * 108.77200 * 126.37491 * 9 8 6 11 11 C 1.53037 * 109.31406 * 54.63338 * 10 9 8 12 12 C 1.53038 * 109.53903 * 298.63548 * 11 10 9 13 13 H 1.09003 * 109.49791 * 301.38172 * 12 11 10 14 14 N 1.46900 * 109.49916 * 181.32102 * 12 11 10 15 15 C 1.46896 * 110.99646 * 298.95076 * 14 12 11 16 16 C 1.46900 * 110.99846 * 174.99907 * 14 12 11 17 17 C 1.50697 * 109.46969 * 189.99437 * 16 14 12 18 18 O 1.21293 * 120.00233 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00071 * 180.02562 * 17 16 14 20 20 C 1.37101 * 120.00082 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99786 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00284 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99512 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47116 * 60.00216 * 24 22 20 26 26 H 1.48506 * 109.46957 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47118 * 300.00134 * 24 22 20 28 28 C 1.46918 * 120.63462 * 179.72250 * 8 6 5 29 29 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 31 31 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 4 2 1 33 33 H 1.09004 * 109.46587 * 299.99661 * 5 4 2 34 34 H 1.08998 * 109.47213 * 59.99069 * 5 4 2 35 35 H 1.09001 * 109.58573 * 246.15696 * 9 8 6 36 36 H 1.08997 * 109.58835 * 6.58423 * 9 8 6 37 37 H 1.09001 * 109.49435 * 174.58748 * 10 9 8 38 38 H 1.08998 * 109.49233 * 294.64766 * 10 9 8 39 39 H 1.08997 * 109.45852 * 58.65561 * 11 10 9 40 40 H 1.09004 * 109.45933 * 178.61607 * 11 10 9 41 41 H 1.09003 * 109.47021 * 60.00266 * 15 14 12 42 42 H 1.09003 * 109.47380 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.47730 * 300.00211 * 15 14 12 44 44 H 1.08998 * 109.47370 * 309.99969 * 16 14 12 45 45 H 1.08999 * 109.47174 * 70.00333 * 16 14 12 46 46 H 0.96998 * 120.00305 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99290 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58505 * 353.41543 * 28 8 6 49 49 H 1.08996 * 109.58989 * 113.83884 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.6460 -1.1671 0.0061 6 6 4.1483 -2.5878 0.0134 7 8 3.3603 -3.5097 0.0182 8 7 5.4734 -2.8341 0.0146 9 6 6.4403 -1.7279 0.0083 10 6 7.4126 -1.9163 1.1772 11 6 8.0470 -3.3061 1.0888 12 6 6.9559 -4.3743 1.1912 13 1 6.4198 -4.2576 2.1331 14 7 7.5689 -5.7082 1.1381 15 6 8.2793 -5.9108 -0.1316 16 6 6.5642 -6.7582 1.3526 17 6 7.2554 -8.0847 1.5361 18 8 8.4658 -8.1490 1.4930 19 7 6.5285 -9.1997 1.7482 20 6 7.1573 -10.4064 1.9157 21 1 8.2351 -10.4636 1.8773 22 6 6.4079 -11.5558 2.1349 23 7 5.0965 -11.4862 2.1811 24 14 7.2647 -13.2001 2.3624 25 1 8.1663 -13.1297 3.5402 26 1 6.2490 -14.2617 2.5786 27 1 8.0597 -13.5161 1.1486 28 6 5.9784 -4.2137 0.0278 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.6960 -2.0072 0.0099 33 1 4.0096 -0.6573 -0.8861 34 1 4.0090 -0.6491 0.8938 35 1 6.9933 -1.7312 -0.9310 36 1 5.9128 -0.7807 0.1209 37 1 8.1926 -1.1565 1.1276 38 1 6.8719 -1.8218 2.1189 39 1 8.5667 -3.4082 0.1362 40 1 8.7577 -3.4335 1.9055 41 1 9.0642 -5.1611 -0.2324 42 1 8.7241 -6.9059 -0.1444 43 1 7.5774 -5.8155 -0.9600 44 1 5.9806 -6.5262 2.2435 45 1 5.9025 -6.8100 0.4880 46 1 5.5605 -9.1483 1.7831 47 1 4.5734 -12.2887 2.3338 48 1 5.1461 -4.9063 0.1532 49 1 6.4929 -4.4235 -0.9099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714430621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:47 Heat of formation + Delta-G solvation = -121.924968 kcal Electronic energy + Delta-G solvation = -30069.024989 eV Core-core repulsion = 25837.235324 eV Total energy + Delta-G solvation = -4231.789665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76334 -40.72000 -40.18487 -39.12298 -36.97696 -35.86127 -35.56295 -33.59085 -33.26942 -31.76410 -30.91018 -29.43354 -28.32842 -27.05757 -25.98063 -25.57619 -23.20573 -21.70725 -21.34481 -20.94087 -20.10303 -19.83489 -18.69018 -17.97811 -17.74395 -17.21465 -17.09304 -16.67943 -16.57468 -16.52667 -16.12475 -15.97368 -15.60547 -15.37865 -15.25779 -14.99037 -14.56670 -14.44179 -14.35697 -13.96218 -13.87146 -13.76544 -13.55512 -13.39098 -13.29378 -13.03546 -12.94211 -12.66517 -12.61999 -12.43703 -12.33515 -12.13136 -11.91653 -11.80265 -11.50130 -11.41559 -11.10758 -11.08441 -10.33814 -10.29153 -10.02686 -9.98019 -9.08478 -8.46749 -5.95889 1.35546 1.39200 1.40731 1.52060 1.58783 1.60556 2.03485 2.26904 2.32807 2.72811 3.19411 3.24714 3.38398 3.73520 3.83645 3.89939 3.94687 4.02930 4.15571 4.22514 4.24365 4.26347 4.28910 4.44631 4.49393 4.53555 4.55091 4.57025 4.62125 4.66605 4.76774 4.83583 4.87066 5.04408 5.10060 5.16990 5.24276 5.28608 5.32890 5.39221 5.41161 5.85441 6.03605 6.17150 6.21745 6.44358 6.59205 6.90074 7.11836 7.14005 7.54930 8.10248 8.70567 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.002240 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.323960 B =12497.115611 C =14126.086337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.511 3.489 3 O -0.592 6.592 4 N -0.720 5.720 5 C 0.105 3.895 6 C 0.507 3.493 7 O -0.576 6.576 8 N -0.598 5.598 9 C 0.096 3.904 10 C -0.126 4.126 11 C -0.109 4.109 12 C 0.077 3.923 13 H 0.077 0.923 14 N -0.520 5.520 15 C 0.020 3.980 16 C 0.057 3.943 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.082 3.918 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.416 0.584 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.032 0.968 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.394 0.606 47 H 0.277 0.723 48 H 0.070 0.930 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 25.072 -5.785 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.300 3.700 3 O -0.473 6.473 4 N -0.375 5.375 5 C -0.022 4.022 6 C 0.296 3.704 7 O -0.456 6.456 8 N -0.330 5.330 9 C -0.025 4.025 10 C -0.164 4.164 11 C -0.147 4.147 12 C -0.032 4.032 13 H 0.095 0.905 14 N -0.243 5.243 15 C -0.127 4.127 16 C -0.075 4.075 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.043 4.043 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.254 0.746 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.118 0.882 45 H 0.079 0.921 46 H 0.228 0.772 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.330 25.087 -5.403 26.025 hybrid contribution -0.925 -1.696 -0.384 1.970 sum -5.255 23.391 -5.787 24.663 Atomic orbital electron populations 1.21937 0.88108 1.06320 1.06319 1.21503 0.92253 0.82184 0.74052 1.90706 1.71995 1.32681 1.51895 1.45924 1.06158 1.10247 1.75205 1.21143 0.82572 0.92698 1.05833 1.20894 0.82402 0.91574 0.75547 1.90708 1.55669 1.47216 1.51972 1.48065 1.05390 1.07689 1.71898 1.22204 0.90950 0.88873 1.00452 1.21901 0.99356 0.96767 0.98402 1.21597 0.96733 0.92995 1.03401 1.22089 0.94900 0.88599 0.97600 0.90491 1.61867 1.26301 1.00632 1.35510 1.22530 0.98398 1.03354 0.88424 1.21719 0.93552 0.89721 1.02482 1.20649 0.87842 0.86072 0.82402 1.90457 1.15490 1.86859 1.56831 1.41956 1.09269 1.06437 1.63599 1.19637 0.93200 0.85136 1.48148 0.90084 1.26085 0.96131 1.02868 0.96430 1.69685 1.05496 1.31575 1.49588 0.84966 0.77736 0.76553 0.78944 1.19632 1.19580 1.19588 1.22229 0.98178 0.83547 1.00319 0.88626 0.87356 0.87436 0.74567 0.87011 0.87127 0.89081 0.87177 0.87366 0.91447 0.90657 0.91100 0.89308 0.92602 0.94969 0.88222 0.92069 0.77233 0.91327 0.91174 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.32 71.24 0.74 -0.64 16 2 C 0.51 8.36 7.94 87.66 0.70 9.06 16 3 O -0.59 -14.33 17.09 -3.04 -0.05 -14.38 16 4 N -0.72 -11.09 5.53 -466.79 -2.58 -13.67 16 5 C 0.10 1.51 4.50 85.63 0.39 1.90 16 6 C 0.51 9.96 7.77 87.65 0.68 10.64 16 7 O -0.58 -15.85 15.08 -3.03 -0.05 -15.90 16 8 N -0.60 -10.21 2.98 -819.69 -2.44 -12.65 16 9 C 0.10 0.91 6.34 86.36 0.55 1.45 16 10 C -0.13 -1.27 6.08 30.67 0.19 -1.09 16 11 C -0.11 -1.82 4.92 30.62 0.15 -1.67 16 12 C 0.08 1.78 2.36 44.86 0.11 1.89 16 13 H 0.08 1.90 8.03 -2.39 -0.02 1.88 16 14 N -0.52 -16.37 4.49 -901.95 -4.05 -20.42 16 15 C 0.02 0.62 8.46 127.69 1.08 1.70 16 16 C 0.06 2.05 4.89 85.56 0.42 2.46 16 17 C 0.44 21.47 7.47 87.66 0.66 22.13 16 18 O -0.61 -33.58 13.91 -3.07 -0.04 -33.62 16 19 N -0.58 -30.28 5.29 -306.98 -1.62 -31.90 16 20 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.86 13.05 21.66 0.28 -50.57 16 24 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 C 0.08 1.81 5.01 86.23 0.43 2.24 16 29 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.42 6.23 7.44 -92.71 -0.69 5.55 16 33 H 0.11 1.34 7.94 -2.39 -0.02 1.32 16 34 H 0.11 1.37 7.69 -2.39 -0.02 1.36 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 0.58 5.93 -2.39 -0.01 0.57 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 1.16 6.50 -2.39 -0.02 1.15 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.09 2.19 6.36 -2.39 -0.02 2.18 16 42 H 0.06 2.19 5.83 -2.39 -0.01 2.17 16 43 H 0.03 0.86 6.17 -2.39 -0.01 0.85 16 44 H 0.10 3.36 8.00 -2.39 -0.02 3.35 16 45 H 0.06 2.08 7.08 -2.39 -0.02 2.06 16 46 H 0.39 20.00 7.90 -92.71 -0.73 19.27 16 47 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.07 1.94 5.92 -2.39 -0.01 1.93 16 49 H 0.08 1.67 6.11 -2.39 -0.01 1.66 16 Total: -1.00 -78.15 388.87 -1.59 -79.74 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.42 Total: 36.47 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 7.36 Total: 31.44 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -10.41 Total: -129.21 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -0.14 Total: -63.90 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -78.15 -1.59 -79.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714430621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.183 kcal (2) G-P(sol) polarization free energy of solvation -78.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds