Wall clock time and date at job start Sat Apr 11 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 120.00062 * 2 1 4 4 N 1.34784 * 119.99962 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99982 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99785 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00110 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00221 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47425 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34784 * 120.00190 * 179.97438 * 10 9 8 13 13 C 1.46924 * 120.63042 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.89348 * 233.55919 * 13 12 10 15 15 C 1.53066 * 109.29582 * 305.57616 * 14 13 12 16 16 C 1.53046 * 109.65886 * 61.15356 * 15 14 13 17 17 H 1.09001 * 109.49423 * 58.65069 * 16 15 14 18 18 N 1.46495 * 109.52615 * 178.72705 * 16 15 14 19 19 C 1.46501 * 119.99532 * 59.86301 * 18 16 15 20 20 C 1.36933 * 120.00463 * 239.85249 * 18 16 15 21 21 H 1.08000 * 120.00249 * 324.55445 * 20 18 16 22 22 C 1.38811 * 119.99805 * 144.54360 * 20 18 16 23 23 N 1.31626 * 120.00023 * 157.66208 * 22 20 18 24 24 Si 1.86799 * 120.00155 * 337.66759 * 22 20 18 25 25 H 1.48499 * 109.47167 * 95.56310 * 24 22 20 26 26 H 1.48502 * 109.47002 * 215.56121 * 24 22 20 27 27 H 1.48496 * 109.47397 * 335.55944 * 24 22 20 28 28 C 1.46923 * 120.62984 * 180.02562 * 12 10 9 29 29 H 1.09004 * 109.47000 * 269.99818 * 1 2 3 30 30 H 1.08997 * 109.46838 * 29.99705 * 1 2 3 31 31 H 1.09003 * 109.46973 * 150.00140 * 1 2 3 32 32 H 0.96998 * 119.99421 * 0.02562 * 4 2 1 33 33 H 1.09007 * 109.47195 * 60.00404 * 5 4 2 34 34 H 1.09002 * 109.47411 * 300.00383 * 5 4 2 35 35 H 0.97007 * 120.00035 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.47184 * 59.99583 * 9 8 6 37 37 H 1.09002 * 109.47195 * 300.00274 * 9 8 6 38 38 H 1.09006 * 109.58392 * 353.42206 * 13 12 10 39 39 H 1.09000 * 109.58256 * 113.69751 * 13 12 10 40 40 H 1.09002 * 109.49653 * 65.38952 * 14 13 12 41 41 H 1.09003 * 109.49494 * 185.48546 * 14 13 12 42 42 H 1.08999 * 109.35221 * 301.13509 * 15 14 13 43 43 H 1.09002 * 109.45773 * 181.24090 * 15 14 13 44 44 H 1.08997 * 109.47883 * 87.96434 * 19 18 16 45 45 H 1.09004 * 109.46763 * 207.96759 * 19 18 16 46 46 H 1.09003 * 109.47398 * 327.95977 * 19 18 16 47 47 H 0.97001 * 120.00249 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.58496 * 246.15801 * 28 12 10 49 49 H 1.09003 * 109.58894 * 6.58041 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1482 -2.5881 0.0001 7 8 3.3600 -3.5099 0.0001 8 7 5.4733 -2.8344 0.0001 9 6 5.9616 -4.2156 0.0008 10 6 7.4685 -4.2156 0.0001 11 8 8.0750 -3.1654 -0.0004 12 7 8.1425 -5.3829 0.0011 13 6 7.4219 -6.6633 0.0023 14 6 7.9289 -7.5168 1.1690 15 6 9.4510 -7.6489 1.0749 16 6 10.0949 -6.2637 1.1700 17 1 9.8106 -5.7943 2.1118 18 7 11.5526 -6.3963 1.1103 19 6 12.1854 -7.0027 -0.0636 20 6 12.3237 -5.9531 2.1515 21 1 12.0349 -5.0681 2.6990 22 6 13.4766 -6.6416 2.5034 23 7 14.4329 -6.0277 3.1675 24 14 13.6708 -8.4393 2.0344 25 1 14.4372 -8.5401 0.7665 26 1 14.3997 -9.1559 3.1117 27 1 12.3300 -9.0511 1.8524 28 6 9.6116 -5.3991 0.0010 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6958 -2.0072 0.0005 33 1 4.0096 -0.6529 0.8895 34 1 4.0089 -0.6540 -0.8905 35 1 6.1037 -2.0971 -0.0003 36 1 5.5981 -4.7299 -0.8889 37 1 5.5983 -4.7290 0.8911 38 1 6.3536 -6.4812 0.1199 39 1 7.6023 -7.1849 -0.9376 40 1 7.6648 -7.0378 2.1118 41 1 7.4721 -8.5053 1.1220 42 1 9.7155 -8.1075 0.1222 43 1 9.8123 -8.2741 1.8915 44 1 12.3754 -6.2335 -0.8121 45 1 13.1279 -7.4649 0.2298 46 1 11.5236 -7.7611 -0.4820 47 1 15.2387 -6.5087 3.4131 48 1 9.9723 -5.8190 -0.9380 49 1 9.9883 -4.3829 0.1177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714439986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:52 Heat of formation + Delta-G solvation = -75.378577 kcal Electronic energy + Delta-G solvation = -29650.123821 eV Core-core repulsion = 25420.352559 eV Total energy + Delta-G solvation = -4229.771262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.80100 -40.15625 -39.32830 -37.79401 -35.42533 -35.08623 -34.69479 -32.54714 -31.64852 -31.07524 -30.03517 -28.73842 -26.71802 -26.22209 -24.92313 -23.65562 -21.87705 -21.11754 -21.00954 -20.02025 -19.00063 -18.25416 -17.22273 -17.02732 -16.86171 -16.58375 -16.31058 -15.95329 -15.85906 -15.54929 -15.11130 -14.87736 -14.35633 -14.28161 -14.07654 -13.82825 -13.64515 -13.56144 -13.25645 -13.08552 -13.00171 -12.65679 -12.59413 -12.52363 -12.37485 -12.35073 -12.22714 -11.39177 -11.12821 -10.81049 -10.59075 -10.51725 -10.47066 -10.39016 -10.21550 -10.00813 -9.95979 -9.70399 -9.58455 -9.55305 -8.81135 -8.46652 -6.93965 -6.03905 -3.45297 2.05782 2.22133 2.24109 2.43049 2.84697 3.15217 3.26107 3.41734 3.45738 4.13780 4.22093 4.43970 4.46348 4.66316 4.78618 4.82176 4.91980 4.95262 4.96438 4.97965 5.01709 5.03960 5.12937 5.27021 5.37101 5.38728 5.48969 5.66737 5.73304 5.81068 5.84776 5.91052 6.00324 6.13307 6.22384 6.27307 6.42420 6.44202 6.64093 6.74752 6.79099 6.97855 7.05054 7.29998 7.64537 7.77181 7.94741 8.00020 8.31336 8.90311 9.64447 10.01869 11.11449 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.001911 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.025755 B =14651.290150 C =15227.408598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.514 3.486 7 O -0.542 6.542 8 N -0.710 5.710 9 C 0.101 3.899 10 C 0.507 3.493 11 O -0.537 6.537 12 N -0.599 5.599 13 C 0.104 3.896 14 C -0.132 4.132 15 C -0.139 4.139 16 C 0.168 3.832 17 H 0.075 0.925 18 N -0.601 5.601 19 C 0.108 3.892 20 C -0.271 4.271 21 H 0.081 0.919 22 C 0.034 3.966 23 N -0.898 5.898 24 Si 0.886 3.114 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.270 1.270 28 C 0.099 3.901 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.417 0.583 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.046 0.954 46 H 0.031 0.969 47 H 0.264 0.736 48 H 0.064 0.936 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.110 2.102 -8.603 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.376 5.376 5 C -0.028 4.028 6 C 0.300 3.700 7 O -0.419 6.419 8 N -0.365 5.365 9 C -0.026 4.026 10 C 0.293 3.707 11 O -0.415 6.415 12 N -0.332 5.332 13 C -0.019 4.019 14 C -0.171 4.171 15 C -0.179 4.179 16 C 0.059 3.941 17 H 0.093 0.907 18 N -0.324 5.324 19 C -0.037 4.037 20 C -0.399 4.399 21 H 0.098 0.902 22 C -0.167 4.167 23 N -0.539 5.539 24 Si 0.717 3.283 25 H -0.216 1.216 26 H -0.231 1.231 27 H -0.195 1.195 28 C -0.025 4.025 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.251 0.749 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.681 2.741 -8.511 27.193 hybrid contribution 0.498 -1.399 -0.213 1.500 sum -25.183 1.342 -8.724 26.685 Atomic orbital electron populations 1.21864 0.91011 1.05098 1.05051 1.20866 0.90827 0.82979 0.75359 1.90753 1.70786 1.31389 1.49527 1.45828 1.05841 1.10062 1.75909 1.21032 0.82535 0.93839 1.05435 1.20469 0.82293 0.91286 0.76002 1.90704 1.55173 1.45908 1.50157 1.45623 1.07197 1.09039 1.74673 1.21155 0.91970 0.84629 1.04823 1.20344 0.89301 0.84116 0.76923 1.90718 1.69621 1.30762 1.50392 1.48110 1.08030 1.05243 1.71865 1.21847 0.96013 0.84316 0.99765 1.21919 0.97443 0.99543 0.98165 1.22168 0.93221 1.00261 1.02249 1.20728 0.84417 0.92498 0.96432 0.90661 1.44025 0.99824 1.71683 1.16876 1.21349 0.96848 0.95741 0.89725 1.18805 1.04445 1.07180 1.09507 0.90174 1.25429 0.96549 0.97705 0.96996 1.69874 1.06273 1.35900 1.41894 0.86834 0.77792 0.87590 0.76131 1.21597 1.23139 1.19477 1.22416 0.76320 1.03520 1.00204 0.88605 0.88655 0.89949 0.74927 0.87905 0.87962 0.74462 0.88248 0.88072 0.90037 0.90984 0.91384 0.90893 0.92416 0.91256 0.96502 0.93599 0.95050 0.92644 0.91774 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.30 36.00 0.37 -0.35 16 2 C 0.51 4.25 7.94 -10.98 -0.09 4.17 16 3 O -0.55 -6.90 17.10 5.56 0.10 -6.81 16 4 N -0.72 -5.30 5.53 -61.47 -0.34 -5.64 16 5 C 0.10 0.75 6.15 -5.20 -0.03 0.72 16 6 C 0.51 4.58 7.90 -10.98 -0.09 4.49 16 7 O -0.54 -6.02 15.67 5.56 0.09 -5.93 16 8 N -0.71 -6.41 5.53 -61.47 -0.34 -6.75 16 9 C 0.10 0.94 4.50 -5.20 -0.02 0.92 16 10 C 0.51 6.44 7.77 -10.98 -0.09 6.36 16 11 O -0.54 -8.72 15.08 5.56 0.08 -8.63 16 12 N -0.60 -7.61 2.97 -172.75 -0.51 -8.13 16 13 C 0.10 0.98 6.34 -3.71 -0.02 0.95 16 14 C -0.13 -1.43 6.09 -26.60 -0.16 -1.59 16 15 C -0.14 -2.11 5.11 -26.67 -0.14 -2.25 16 16 C 0.17 3.07 2.75 -67.79 -0.19 2.88 16 17 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 18 N -0.60 -13.61 2.41 -173.32 -0.42 -14.02 16 19 C 0.11 2.24 8.45 59.85 0.51 2.75 16 20 C -0.27 -7.41 9.85 -15.06 -0.15 -7.56 16 21 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 22 C 0.03 0.96 5.31 -17.43 -0.09 0.87 16 23 N -0.90 -27.13 13.97 55.49 0.78 -26.36 16 24 Si 0.89 21.75 24.94 -169.99 -4.24 17.51 16 25 H -0.29 -6.90 6.67 56.52 0.38 -6.52 16 26 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.10 1.59 5.79 -3.69 -0.02 1.57 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.41 2.63 7.44 -40.82 -0.30 2.32 16 33 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.42 3.74 7.44 -40.82 -0.30 3.43 16 36 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 37 H 0.10 0.86 7.69 -51.93 -0.40 0.46 16 38 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.85 6.73 -51.93 -0.35 0.50 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.05 3.08 -51.93 -0.16 0.89 16 46 H 0.03 0.56 6.46 -51.93 -0.34 0.22 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.06 1.00 7.52 -51.93 -0.39 0.61 16 49 H 0.09 1.79 7.01 -51.93 -0.36 1.43 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -35.54 391.24 -6.67 -42.21 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.55 Total: 2.73 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -0.21 Total: 13.93 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.84 Total: -60.90 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.27 Total: -21.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.24 Total: 17.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.54 -6.67 -42.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714439986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.167 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds