Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46880 * 2 1 4 4 C 1.46900 * 110.99716 * 287.66383 * 3 2 1 5 5 C 1.52998 * 109.47156 * 160.34002 * 4 3 2 6 6 N 1.46503 * 109.47207 * 184.87834 * 5 4 3 7 7 C 1.34776 * 119.99733 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99643 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.67469 * 299.50229 * 9 7 6 11 11 C 1.53347 * 109.67622 * 178.96456 * 9 7 6 12 12 C 1.52902 * 108.68836 * 172.74729 * 11 9 7 13 13 N 1.45749 * 110.49699 * 50.72660 * 12 11 9 14 14 C 1.33357 * 124.10443 * 340.96297 * 13 12 11 15 15 O 1.21284 * 118.24469 * 182.22241 * 14 13 12 16 16 C 1.50171 * 123.50929 * 2.20041 * 14 13 12 17 17 C 1.46905 * 111.00017 * 163.71259 * 3 2 1 18 18 C 1.50697 * 109.46858 * 293.95292 * 17 3 2 19 19 O 1.21298 * 120.00274 * 359.97438 * 18 17 3 20 20 N 1.34772 * 119.99757 * 180.02562 * 18 17 3 21 21 C 1.37104 * 119.99957 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00074 * 179.72568 * 21 20 18 24 24 N 1.31405 * 119.99878 * 180.27853 * 23 21 20 25 25 Si 1.86803 * 119.99819 * 0.26962 * 23 21 20 26 26 H 1.48499 * 109.46785 * 90.00597 * 25 23 21 27 27 H 1.48504 * 109.47244 * 210.00056 * 25 23 21 28 28 H 1.48501 * 109.47485 * 330.00687 * 25 23 21 29 29 H 1.08998 * 109.47244 * 298.94065 * 1 2 3 30 30 H 1.09001 * 109.46891 * 58.94670 * 1 2 3 31 31 H 1.09002 * 109.46728 * 178.93719 * 1 2 3 32 32 H 1.08998 * 109.47147 * 239.99723 * 2 1 3 33 33 H 1.08998 * 109.46890 * 119.99571 * 2 1 3 34 34 H 1.09000 * 109.47338 * 280.34053 * 4 3 2 35 35 H 1.08997 * 109.47161 * 40.33916 * 4 3 2 36 36 H 1.08994 * 109.47205 * 304.88199 * 5 4 3 37 37 H 1.09003 * 109.46682 * 64.88294 * 5 4 3 38 38 H 0.96998 * 120.00126 * 0.02562 * 6 5 4 39 39 H 1.08999 * 109.60351 * 292.50010 * 11 9 7 40 40 H 1.09005 * 109.59984 * 52.97775 * 11 9 7 41 41 H 1.08996 * 109.28591 * 290.41693 * 12 11 9 42 42 H 1.08997 * 109.13921 * 170.94340 * 12 11 9 43 43 H 0.96999 * 117.94962 * 160.93836 * 13 12 11 44 44 H 1.09002 * 109.40137 * 222.29296 * 16 14 13 45 45 H 1.08998 * 109.40220 * 102.54628 * 16 14 13 46 46 H 1.09000 * 109.46824 * 173.95113 * 17 3 2 47 47 H 1.08997 * 109.46820 * 53.95203 * 17 3 2 48 48 H 0.97000 * 120.00391 * 359.97438 * 20 18 17 49 49 H 0.97004 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8028 2.0200 -1.3068 5 6 1.8534 3.5410 -1.1494 6 7 1.5222 4.1755 -2.4277 7 6 1.5046 5.5194 -2.5284 8 8 1.7635 6.2034 -1.5609 9 6 1.1634 6.1721 -3.8431 10 1 1.8857 5.8698 -4.6013 11 6 1.1882 7.6971 -3.6844 12 6 1.0195 8.3361 -5.0632 13 7 -0.1327 7.7678 -5.7515 14 6 -0.6982 6.6043 -5.4275 15 8 -1.6289 6.2119 -6.0989 16 6 -0.2439 5.7538 -4.2763 17 6 3.4363 1.4426 0.3846 18 6 3.5849 1.0098 1.8205 19 8 2.6069 0.6858 2.4606 20 7 4.8044 0.9839 2.3936 21 6 4.9396 0.5906 3.7001 22 1 4.0687 0.3021 4.2700 23 6 6.1976 0.5584 4.2893 24 7 6.3277 0.1762 5.5398 25 14 7.7037 1.0580 3.3037 26 1 7.9392 2.5154 3.4644 27 1 8.8878 0.3082 3.7947 28 1 7.4814 0.7478 1.8686 29 1 -0.3633 0.4973 0.8993 30 1 -0.3633 0.5301 -0.8804 31 1 -0.3633 -1.0275 -0.0191 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5810 1.7003 -1.9998 35 1 0.8275 1.7272 -1.6956 36 1 1.1339 3.8521 -0.3922 37 1 2.8556 3.8414 -0.8436 38 1 1.3156 3.6285 -3.2016 39 1 0.3717 8.0104 -3.0339 40 1 2.1410 8.0044 -3.2529 41 1 1.9171 8.1572 -5.6551 42 1 0.8746 9.4098 -4.9442 43 1 -0.5122 8.2672 -6.4913 44 1 -0.2327 4.7074 -4.5814 45 1 -0.9321 5.8785 -3.4403 46 1 3.8018 2.4635 0.2731 47 1 4.0143 0.7776 -0.2570 48 1 5.5865 1.2434 1.8819 49 1 7.2060 0.1534 5.9511 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714581929.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = -103.003417 kcal Electronic energy + Delta-G solvation = -29448.785043 eV Core-core repulsion = 25217.815877 eV Total energy + Delta-G solvation = -4230.969165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11231 -39.74542 -38.94268 -37.16930 -36.69151 -34.95586 -33.91367 -33.68732 -31.72526 -31.01360 -30.22718 -29.34921 -26.66397 -25.61259 -24.16798 -23.65300 -22.50627 -21.17891 -20.47826 -19.73194 -19.36209 -18.32865 -18.04355 -17.33816 -16.85279 -16.40264 -15.97169 -15.88711 -15.72592 -15.25960 -14.91161 -14.81570 -14.65041 -14.47219 -14.20262 -13.95823 -13.94584 -13.54642 -13.33039 -13.20712 -12.57192 -12.47325 -12.39522 -12.25996 -12.02432 -11.86009 -11.67344 -11.65046 -11.59322 -11.51601 -11.25309 -10.92404 -10.70112 -10.60407 -10.57667 -9.98103 -9.93592 -9.62712 -9.53152 -9.31359 -8.57637 -8.18531 -8.05970 -6.31182 -3.82459 2.13188 2.28404 2.72439 2.75171 3.01518 3.06855 3.14768 3.72213 3.84512 3.95351 4.05928 4.09963 4.14947 4.18882 4.58466 4.65151 4.66859 4.73765 4.82045 4.94317 4.95754 5.12043 5.18908 5.20542 5.25628 5.32602 5.39105 5.44594 5.60832 5.67053 5.68709 5.74454 5.77238 5.84681 5.95429 6.02140 6.14630 6.22357 6.38714 6.48096 6.77744 7.11731 7.13195 7.24860 7.58023 7.69119 7.89283 8.14328 8.59837 8.95139 9.42298 9.82850 10.81893 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.002071 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.325571 B =13517.170717 C =14847.950857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 N -0.511 5.511 4 C 0.042 3.958 5 C 0.120 3.880 6 N -0.727 5.727 7 C 0.518 3.482 8 O -0.529 6.529 9 C -0.111 4.111 10 H 0.106 0.894 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.721 5.721 14 C 0.524 3.476 15 O -0.555 6.555 16 C -0.127 4.127 17 C 0.040 3.960 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.401 0.599 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 12.706 -25.738 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.236 5.236 4 C -0.087 4.087 5 C -0.004 4.004 6 N -0.379 5.379 7 C 0.303 3.697 8 O -0.405 6.405 9 C -0.133 4.133 10 H 0.125 0.875 11 C -0.157 4.157 12 C -0.016 4.016 13 N -0.373 5.373 14 C 0.311 3.689 15 O -0.433 6.433 16 C -0.167 4.167 17 C -0.092 4.092 18 C 0.238 3.762 19 O -0.439 6.439 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.236 0.764 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.202 0.798 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.522 12.841 -24.167 28.663 hybrid contribution 1.790 -0.117 -1.843 2.571 sum -6.733 12.725 -26.009 29.727 Atomic orbital electron populations 1.21719 0.95124 1.00956 1.02010 1.22216 0.96059 0.87773 1.01637 1.61434 1.17113 1.18877 1.26185 1.22274 1.01733 0.93470 0.91184 1.21390 1.02213 0.91883 0.84909 1.45963 1.71306 1.06597 1.14057 1.20321 0.77260 0.82213 0.89938 1.90765 1.47868 1.62881 1.38948 1.21472 0.98085 0.97310 0.96436 0.87549 1.21747 1.05493 0.92333 0.96154 1.21465 0.88328 0.98499 0.93258 1.45508 1.33106 1.22126 1.36578 1.19977 0.82289 0.81307 0.85354 1.90797 1.29426 1.70926 1.52145 1.21668 0.96331 1.00929 0.97809 1.21976 0.89035 1.01933 0.96236 1.19598 0.83885 0.84621 0.88132 1.90550 1.37462 1.51665 1.64185 1.42220 1.06754 1.61145 1.12950 1.19422 0.96513 1.41613 0.85677 0.86242 1.25040 0.97693 0.97604 0.95861 1.69619 1.24456 1.46516 1.11510 0.86679 0.83381 0.79517 0.79838 1.19577 1.20216 1.19585 0.91435 0.93664 0.92716 0.95901 0.88135 0.94308 0.89935 0.89958 0.91209 0.76737 0.89982 0.88367 0.91181 0.89843 0.76378 0.87458 0.87365 0.89180 0.93269 0.79765 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 10.00 37.16 0.37 -1.42 16 2 C 0.05 0.74 5.23 -3.82 -0.02 0.72 16 3 N -0.51 -7.54 4.13 -236.07 -0.97 -8.52 16 4 C 0.04 0.44 4.94 -3.82 -0.02 0.42 16 5 C 0.12 1.28 5.71 -4.04 -0.02 1.26 16 6 N -0.73 -5.62 5.46 -60.29 -0.33 -5.95 16 7 C 0.52 4.62 7.14 -10.99 -0.08 4.54 16 8 O -0.53 -7.12 15.89 5.56 0.09 -7.03 16 9 C -0.11 -0.60 2.60 -91.55 -0.24 -0.84 16 10 H 0.11 0.39 8.13 -51.93 -0.42 -0.03 16 11 C -0.12 -0.60 4.71 -26.60 -0.13 -0.73 16 12 C 0.11 0.33 7.17 -4.50 -0.03 0.30 16 13 N -0.72 -3.69 5.45 -61.40 -0.33 -4.02 16 14 C 0.52 4.10 7.71 -11.87 -0.09 4.01 16 15 O -0.55 -6.77 17.78 5.55 0.10 -6.67 16 16 C -0.13 -0.73 5.18 -28.10 -0.15 -0.88 16 17 C 0.04 0.64 5.28 -4.97 -0.03 0.61 16 18 C 0.45 10.02 7.34 -10.99 -0.08 9.94 16 19 O -0.56 -14.47 14.06 5.54 0.08 -14.39 16 20 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 21 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 22 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 25 Si 0.88 19.29 27.74 -169.99 -4.72 14.57 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.37 6.51 56.52 0.37 -5.00 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.48 6.53 -51.93 -0.34 0.14 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 33 H 0.10 1.86 5.81 -51.93 -0.30 1.56 16 34 H 0.04 0.35 8.00 -51.93 -0.42 -0.06 16 35 H 0.08 0.74 6.26 -51.93 -0.32 0.41 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.84 6.94 -51.93 -0.36 0.48 16 38 H 0.40 1.88 8.16 -40.82 -0.33 1.55 16 39 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.10 0.54 7.89 -51.93 -0.41 0.13 16 41 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.40 1.72 8.80 -40.82 -0.36 1.36 16 44 H 0.11 0.48 7.92 -51.93 -0.41 0.07 16 45 H 0.11 0.67 8.09 -51.93 -0.42 0.25 16 46 H 0.09 1.30 6.71 -51.93 -0.35 0.95 16 47 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 48 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 49 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -37.18 394.66 -7.79 -44.97 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.61 Total: 9.63 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.76 Total: 10.30 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.92 Total: -57.33 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: 0.27 Total: -28.09 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.72 Total: 14.57 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.18 -7.79 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714581929.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.033 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds