Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46880 * 2 1 4 4 C 1.46900 * 110.99716 * 287.66383 * 3 2 1 5 5 C 1.52998 * 109.47156 * 160.34002 * 4 3 2 6 6 N 1.46503 * 109.47207 * 184.87834 * 5 4 3 7 7 C 1.34776 * 119.99733 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99643 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.67469 * 299.50229 * 9 7 6 11 11 C 1.53347 * 109.67622 * 178.96456 * 9 7 6 12 12 C 1.52902 * 108.68836 * 172.74729 * 11 9 7 13 13 N 1.45749 * 110.49699 * 50.72660 * 12 11 9 14 14 C 1.33357 * 124.10443 * 340.96297 * 13 12 11 15 15 O 1.21284 * 118.24469 * 182.22241 * 14 13 12 16 16 C 1.50171 * 123.50929 * 2.20041 * 14 13 12 17 17 C 1.46905 * 111.00017 * 163.71259 * 3 2 1 18 18 C 1.50697 * 109.46858 * 293.95292 * 17 3 2 19 19 O 1.21298 * 120.00274 * 359.97438 * 18 17 3 20 20 N 1.34772 * 119.99757 * 180.02562 * 18 17 3 21 21 C 1.37104 * 119.99957 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00074 * 179.72568 * 21 20 18 24 24 N 1.31405 * 119.99878 * 180.27853 * 23 21 20 25 25 Si 1.86803 * 119.99819 * 0.26962 * 23 21 20 26 26 H 1.48499 * 109.46785 * 90.00597 * 25 23 21 27 27 H 1.48504 * 109.47244 * 210.00056 * 25 23 21 28 28 H 1.48501 * 109.47485 * 330.00687 * 25 23 21 29 29 H 1.08998 * 109.47244 * 298.94065 * 1 2 3 30 30 H 1.09001 * 109.46891 * 58.94670 * 1 2 3 31 31 H 1.09002 * 109.46728 * 178.93719 * 1 2 3 32 32 H 1.08998 * 109.47147 * 239.99723 * 2 1 3 33 33 H 1.08998 * 109.46890 * 119.99571 * 2 1 3 34 34 H 1.09000 * 109.47338 * 280.34053 * 4 3 2 35 35 H 1.08997 * 109.47161 * 40.33916 * 4 3 2 36 36 H 1.08994 * 109.47205 * 304.88199 * 5 4 3 37 37 H 1.09003 * 109.46682 * 64.88294 * 5 4 3 38 38 H 0.96998 * 120.00126 * 0.02562 * 6 5 4 39 39 H 1.08999 * 109.60351 * 292.50010 * 11 9 7 40 40 H 1.09005 * 109.59984 * 52.97775 * 11 9 7 41 41 H 1.08996 * 109.28591 * 290.41693 * 12 11 9 42 42 H 1.08997 * 109.13921 * 170.94340 * 12 11 9 43 43 H 0.96999 * 117.94962 * 160.93836 * 13 12 11 44 44 H 1.09002 * 109.40137 * 222.29296 * 16 14 13 45 45 H 1.08998 * 109.40220 * 102.54628 * 16 14 13 46 46 H 1.09000 * 109.46824 * 173.95113 * 17 3 2 47 47 H 1.08997 * 109.46820 * 53.95203 * 17 3 2 48 48 H 0.97000 * 120.00391 * 359.97438 * 20 18 17 49 49 H 0.97004 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8028 2.0200 -1.3068 5 6 1.8534 3.5410 -1.1494 6 7 1.5222 4.1755 -2.4277 7 6 1.5046 5.5194 -2.5284 8 8 1.7635 6.2034 -1.5609 9 6 1.1634 6.1721 -3.8431 10 1 1.8857 5.8698 -4.6013 11 6 1.1882 7.6971 -3.6844 12 6 1.0195 8.3361 -5.0632 13 7 -0.1327 7.7678 -5.7515 14 6 -0.6982 6.6043 -5.4275 15 8 -1.6289 6.2119 -6.0989 16 6 -0.2439 5.7538 -4.2763 17 6 3.4363 1.4426 0.3846 18 6 3.5849 1.0098 1.8205 19 8 2.6069 0.6858 2.4606 20 7 4.8044 0.9839 2.3936 21 6 4.9396 0.5906 3.7001 22 1 4.0687 0.3021 4.2700 23 6 6.1976 0.5584 4.2893 24 7 6.3277 0.1762 5.5398 25 14 7.7037 1.0580 3.3037 26 1 7.9392 2.5154 3.4644 27 1 8.8878 0.3082 3.7947 28 1 7.4814 0.7478 1.8686 29 1 -0.3633 0.4973 0.8993 30 1 -0.3633 0.5301 -0.8804 31 1 -0.3633 -1.0275 -0.0191 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5810 1.7003 -1.9998 35 1 0.8275 1.7272 -1.6956 36 1 1.1339 3.8521 -0.3922 37 1 2.8556 3.8414 -0.8436 38 1 1.3156 3.6285 -3.2016 39 1 0.3717 8.0104 -3.0339 40 1 2.1410 8.0044 -3.2529 41 1 1.9171 8.1572 -5.6551 42 1 0.8746 9.4098 -4.9442 43 1 -0.5122 8.2672 -6.4913 44 1 -0.2327 4.7074 -4.5814 45 1 -0.9321 5.8785 -3.4403 46 1 3.8018 2.4635 0.2731 47 1 4.0143 0.7776 -0.2570 48 1 5.5865 1.2434 1.8819 49 1 7.2060 0.1534 5.9511 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714581929.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = -136.088152 kcal Electronic energy + Delta-G solvation = -29450.219704 eV Core-core repulsion = 25217.815877 eV Total energy + Delta-G solvation = -4232.403827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68899 -40.66243 -40.31482 -38.43825 -37.32033 -36.05265 -35.64544 -34.21286 -33.75559 -32.09283 -30.81153 -30.30488 -27.97241 -26.37505 -25.64840 -24.32976 -23.33414 -22.19434 -21.37864 -21.13418 -20.20666 -20.13754 -18.60852 -18.05217 -17.71161 -17.44729 -17.09897 -16.84140 -16.53882 -16.36979 -16.08721 -16.02364 -15.56978 -15.35848 -15.11608 -15.03841 -14.87641 -14.47791 -14.45617 -14.34336 -14.22090 -13.87799 -13.59078 -13.02972 -12.86931 -12.85039 -12.70637 -12.62846 -12.54286 -12.41145 -12.11752 -12.04855 -12.00141 -11.96146 -11.74143 -11.42885 -11.38239 -10.64924 -10.33078 -10.21508 -10.08828 -10.06594 -9.21578 -8.40273 -6.00627 1.29393 1.35939 1.44048 1.55189 1.61081 1.97667 2.01660 2.23383 2.33025 2.73145 3.15239 3.23114 3.44894 3.60669 3.70941 3.77943 3.90324 4.05476 4.11917 4.21302 4.25337 4.26534 4.35549 4.42584 4.44661 4.55588 4.59235 4.63884 4.73430 4.74635 4.82039 4.88854 4.94650 5.02134 5.09390 5.22310 5.24050 5.40093 5.43130 5.54737 5.81670 5.91611 6.05005 6.21615 6.31113 6.54934 6.61105 6.90144 7.17794 7.25606 7.41577 7.99268 8.77412 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.002071 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.325571 B =13517.170717 C =14847.950857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.052 3.948 3 N -0.538 5.538 4 C 0.051 3.949 5 C 0.126 3.874 6 N -0.712 5.712 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.098 4.098 10 H 0.136 0.864 11 C -0.121 4.121 12 C 0.112 3.888 13 N -0.712 5.712 14 C 0.522 3.478 15 O -0.606 6.606 16 C -0.122 4.122 17 C 0.053 3.947 18 C 0.450 3.550 19 O -0.603 6.603 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.055 0.945 23 C -0.018 4.018 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.275 1.275 28 H -0.230 1.230 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.418 0.582 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.406 0.594 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.388 0.612 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 13.777 -30.460 33.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 N -0.263 5.263 4 C -0.077 4.077 5 C 0.002 3.998 6 N -0.365 5.365 7 C 0.304 3.696 8 O -0.458 6.458 9 C -0.119 4.119 10 H 0.153 0.847 11 C -0.159 4.159 12 C -0.011 4.011 13 N -0.362 5.362 14 C 0.309 3.691 15 O -0.488 6.488 16 C -0.162 4.162 17 C -0.078 4.078 18 C 0.238 3.762 19 O -0.487 6.487 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.073 0.927 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.153 1.153 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.242 0.758 44 H 0.142 0.858 45 H 0.119 0.881 46 H 0.131 0.869 47 H 0.100 0.900 48 H 0.224 0.776 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.735 13.924 -28.949 32.822 hybrid contribution 1.087 -0.434 -0.301 1.208 sum -5.649 13.490 -29.250 32.703 Atomic orbital electron populations 1.21671 0.93943 1.01801 1.01791 1.22106 0.97071 0.87763 1.00577 1.61322 1.16299 1.19259 1.29463 1.22285 1.03804 0.92305 0.89296 1.21131 1.00620 0.92515 0.85575 1.45784 1.70466 1.06515 1.13696 1.20917 0.76047 0.82202 0.90473 1.90753 1.50180 1.63990 1.40893 1.21443 0.98444 0.97146 0.94905 0.84660 1.21743 1.04734 0.92321 0.97104 1.21613 0.88243 0.99166 0.92082 1.45547 1.33098 1.21237 1.36337 1.20257 0.81699 0.81854 0.85258 1.90777 1.31754 1.72334 1.53959 1.21634 0.96147 1.01620 0.96789 1.21877 0.90804 1.03600 0.91555 1.20913 0.82610 0.82140 0.90529 1.90539 1.39042 1.52873 1.66200 1.42058 1.08181 1.61917 1.11464 1.18982 0.95167 1.43471 0.87774 0.92697 1.26118 1.01593 0.96791 0.97084 1.69807 1.25867 1.47923 1.14029 0.85374 0.77010 0.79339 0.79851 1.18395 1.20020 1.15315 0.94472 0.90814 0.91549 0.93020 0.92918 0.91366 0.88006 0.93002 0.92433 0.74506 0.91659 0.88631 0.88898 0.87985 0.75834 0.85768 0.88108 0.86881 0.89977 0.77623 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 10.00 71.98 0.72 -2.54 16 2 C 0.05 1.46 5.23 86.30 0.45 1.91 16 3 N -0.54 -14.83 4.13 -900.78 -3.72 -18.54 16 4 C 0.05 0.85 4.94 86.30 0.43 1.28 16 5 C 0.13 2.43 5.71 86.38 0.49 2.92 16 6 N -0.71 -8.89 5.46 -463.06 -2.53 -11.42 16 7 C 0.52 8.19 7.14 87.66 0.63 8.82 16 8 O -0.58 -15.23 15.89 -3.02 -0.05 -15.28 16 9 C -0.10 -0.79 2.60 -11.40 -0.03 -0.82 16 10 H 0.14 0.38 8.13 -2.39 -0.02 0.36 16 11 C -0.12 -0.98 4.71 30.68 0.14 -0.83 16 12 C 0.11 0.34 7.17 86.49 0.62 0.96 16 13 N -0.71 -5.64 5.45 -467.36 -2.55 -8.18 16 14 C 0.52 7.27 7.71 87.71 0.68 7.95 16 15 O -0.61 -14.32 17.78 -3.04 -0.05 -14.38 16 16 C -0.12 -1.13 5.18 29.71 0.15 -0.98 16 17 C 0.05 1.56 5.28 85.56 0.45 2.02 16 18 C 0.45 20.19 7.34 87.66 0.64 20.83 16 19 O -0.60 -33.06 14.06 -3.09 -0.04 -33.10 16 20 N -0.59 -28.03 5.09 -306.98 -1.56 -29.59 16 21 C -0.32 -19.10 10.16 84.04 0.85 -18.24 16 22 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 24 N -0.94 -56.81 13.96 21.66 0.30 -56.51 16 25 Si 0.96 38.95 27.74 68.60 1.90 40.85 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.72 6.51 99.48 0.65 -7.07 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.34 6.53 -2.39 -0.02 1.33 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.14 8.05 -2.39 -0.02 1.12 16 33 H 0.05 2.00 5.81 -2.39 -0.01 1.98 16 34 H 0.07 0.83 8.00 -2.39 -0.02 0.81 16 35 H 0.10 1.36 6.26 -2.39 -0.01 1.34 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.26 6.94 -2.39 -0.02 1.25 16 38 H 0.42 2.14 8.16 -92.71 -0.76 1.39 16 39 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 40 H 0.10 0.88 7.89 -2.38 -0.02 0.86 16 41 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.41 2.66 8.80 -92.71 -0.82 1.85 16 44 H 0.12 0.72 7.92 -2.39 -0.02 0.71 16 45 H 0.10 1.13 8.09 -2.39 -0.02 1.11 16 46 H 0.11 2.89 6.71 -2.39 -0.02 2.87 16 47 H 0.08 1.95 8.12 -2.39 -0.02 1.94 16 48 H 0.39 15.16 5.76 -92.71 -0.53 14.63 16 49 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -90.82 394.66 -2.76 -93.59 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -1.16 Total: 29.81 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 6.70 Total: 22.76 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -10.05 Total: -124.25 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -0.15 Total: -62.76 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.90 Total: 40.85 kcal Total: -90.82 -2.76 -93.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714581929.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.503 kcal (2) G-P(sol) polarization free energy of solvation -90.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds