Wall clock time and date at job start Sat Apr 11 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47497 * 2 1 4 4 C 1.34778 * 120.00180 * 89.99806 * 3 2 1 5 5 O 1.21287 * 119.99992 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.00115 * 359.97438 * 4 3 2 7 7 N 1.46493 * 109.47082 * 179.97438 * 6 4 3 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 6 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 6 11 11 N 1.46497 * 109.47115 * 180.02562 * 10 8 7 12 12 C 1.34774 * 120.00288 * 180.02562 * 11 10 8 13 13 C 1.50698 * 120.00338 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99761 * 359.97438 * 12 11 10 15 15 C 1.46509 * 120.00075 * 270.00098 * 3 2 1 16 16 H 1.08997 * 110.63508 * 359.29757 * 15 3 2 17 17 C 1.55160 * 110.72088 * 122.43724 * 15 3 2 18 18 C 1.55123 * 101.48197 * 153.73781 * 17 15 3 19 19 N 1.47425 * 104.94263 * 323.22054 * 18 17 15 20 20 C 1.36940 * 125.64970 * 204.04371 * 19 18 17 21 21 H 1.07993 * 120.00345 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99571 * 359.95638 * 20 19 18 23 23 N 1.31616 * 120.00548 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99811 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47381 * 120.00096 * 24 22 20 27 27 H 1.48497 * 109.47260 * 240.00182 * 24 22 20 28 28 C 1.47018 * 108.70308 * 24.00655 * 19 18 17 29 29 H 1.09008 * 109.46842 * 60.00162 * 1 2 3 30 30 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46917 * 300.00515 * 1 2 3 32 32 H 1.08999 * 109.47200 * 239.99816 * 2 1 3 33 33 H 1.08999 * 109.47073 * 119.99943 * 2 1 3 34 34 H 1.09007 * 109.46606 * 60.00104 * 6 4 3 35 35 H 1.09006 * 109.47204 * 300.00561 * 6 4 3 36 36 H 0.97000 * 120.00740 * 359.72841 * 7 6 4 37 37 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 38 38 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 39 39 H 0.97001 * 120.00220 * 359.97438 * 11 10 8 40 40 H 1.09000 * 109.47129 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.47061 * 119.99581 * 13 12 11 42 42 H 1.09000 * 109.47545 * 240.00203 * 13 12 11 43 43 H 1.08996 * 111.00261 * 271.94143 * 17 15 3 44 44 H 1.08998 * 111.00196 * 35.79356 * 17 15 3 45 45 H 1.09001 * 110.41434 * 204.29526 * 18 17 15 46 46 H 1.08997 * 110.29978 * 82.09168 * 18 17 15 47 47 H 0.97004 * 120.00351 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.88308 * 239.52217 * 28 19 18 49 49 H 1.09001 * 109.88378 * 118.35769 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2431 2.0165 1.1672 5 8 2.6470 3.1601 1.1671 6 6 1.9913 1.3064 2.4723 7 7 2.3094 2.2037 3.5857 8 6 2.1597 1.7801 4.8565 9 8 1.7571 0.6578 5.0781 10 6 2.4928 2.7011 6.0018 11 7 2.2479 2.0108 7.2706 12 6 2.4774 2.6444 8.4378 13 6 2.2250 1.9345 9.7429 14 8 2.8870 3.7859 8.4377 15 6 2.2627 2.0718 -1.2688 16 1 2.0440 1.4159 -2.1115 17 6 1.4242 3.3745 -1.3550 18 6 2.2830 4.2311 -2.3219 19 7 3.6796 3.9115 -1.9744 20 6 4.7635 4.7163 -2.2040 21 1 5.7502 4.3902 -1.9105 22 6 4.5937 5.9514 -2.8145 23 7 3.3912 6.3491 -3.1722 24 14 6.0723 7.0491 -3.1284 25 1 7.3014 6.3768 -2.6358 26 1 6.1979 7.3057 -4.5856 27 1 5.8929 8.3378 -2.4126 28 6 3.7160 2.5858 -1.3397 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.6212 0.4186 2.5302 35 1 0.9432 1.0126 2.5298 36 1 2.6318 3.1012 3.4085 37 1 3.5421 2.9900 5.9425 38 1 1.8668 3.5917 5.9457 39 1 1.9200 1.0979 7.2707 40 1 1.8632 0.9257 9.5438 41 1 3.1526 1.8814 10.3129 42 1 1.4771 2.4825 10.3160 43 1 0.4378 3.1771 -1.7746 44 1 1.3433 3.8523 -0.3787 45 1 2.0867 5.2919 -2.1664 46 1 2.0767 3.9553 -3.3561 47 1 3.2727 7.2120 -3.5991 48 1 4.1299 2.6673 -0.3346 49 1 4.3213 1.9048 -1.9380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715036335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:54 Heat of formation + Delta-G solvation = -67.529240 kcal Electronic energy + Delta-G solvation = -30149.481580 eV Core-core repulsion = 25920.050690 eV Total energy + Delta-G solvation = -4229.430890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72965 -40.10684 -39.23258 -36.99717 -35.64769 -34.94429 -34.57222 -32.40685 -30.97446 -30.40014 -29.42877 -28.75032 -27.24422 -26.05047 -24.35099 -23.43297 -21.29235 -20.93913 -20.78517 -20.15202 -19.04888 -17.93387 -17.14881 -16.95755 -16.83295 -16.44987 -16.19098 -15.93373 -15.65840 -15.11856 -14.90666 -14.60170 -14.19842 -14.03240 -13.90377 -13.70888 -13.51668 -13.25415 -13.19944 -13.03499 -12.95172 -12.73634 -12.31299 -12.13029 -12.02769 -11.77276 -11.50801 -11.29196 -10.99479 -10.89180 -10.78244 -10.52409 -10.42297 -10.30968 -10.04646 -9.81866 -9.59994 -9.54721 -9.43815 -9.29689 -8.59869 -8.44996 -6.74166 -5.58368 -2.98754 2.16043 2.30218 2.35289 2.63610 2.93693 3.25474 3.44165 3.49583 3.52065 4.25287 4.31813 4.51979 4.55963 4.72145 4.81680 4.91198 4.96974 5.05357 5.06045 5.09305 5.10300 5.22488 5.36841 5.43095 5.49909 5.51880 5.59683 5.59942 5.76467 5.84519 5.90582 5.93952 6.02893 6.21067 6.50760 6.53849 6.61478 6.73230 7.08450 7.12634 7.14768 7.41867 7.57931 7.69826 7.75896 7.85330 7.92075 8.21729 8.43678 9.28993 9.90156 10.54652 11.45765 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.002579 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.277584 B =10853.609363 C =12931.594275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.599 5.599 4 C 0.500 3.500 5 O -0.503 6.503 6 C 0.101 3.899 7 N -0.709 5.709 8 C 0.514 3.486 9 O -0.545 6.545 10 C 0.098 3.902 11 N -0.719 5.719 12 C 0.512 3.488 13 C -0.169 4.169 14 O -0.547 6.547 15 C 0.135 3.865 16 H 0.090 0.910 17 C -0.154 4.154 18 C 0.157 3.843 19 N -0.595 5.595 20 C -0.213 4.213 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.133 3.867 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.418 0.582 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.412 0.588 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.010 0.990 47 H 0.250 0.750 48 H 0.038 0.962 49 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -16.511 17.166 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.333 5.333 4 C 0.286 3.714 5 O -0.377 6.377 6 C -0.027 4.027 7 N -0.364 5.364 8 C 0.300 3.700 9 O -0.423 6.423 10 C -0.029 4.029 11 N -0.375 5.375 12 C 0.299 3.701 13 C -0.228 4.228 14 O -0.424 6.424 15 C 0.032 3.968 16 H 0.108 0.892 17 C -0.193 4.193 18 C 0.032 3.968 19 N -0.321 5.321 20 C -0.342 4.342 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.006 3.994 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.257 0.743 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.250 0.750 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.027 0.973 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.538 -15.674 17.195 24.458 hybrid contribution 0.648 0.319 -0.518 0.888 sum -6.890 -15.356 16.678 23.694 Atomic orbital electron populations 1.22233 0.95725 1.02209 1.02860 1.21646 0.94650 0.82543 1.03434 1.47955 1.65494 1.13877 1.05975 1.20310 0.78788 0.87213 0.85124 1.90843 1.43539 1.16875 1.86466 1.21209 1.03134 0.93487 0.84840 1.45642 1.67321 1.18990 1.04442 1.20450 0.77543 0.87989 0.84015 1.90689 1.46589 1.20405 1.84603 1.21044 1.04214 0.95291 0.82397 1.45864 1.68428 1.18740 1.04490 1.20856 0.76889 0.86753 0.85621 1.21825 1.04961 1.01471 0.94570 1.90759 1.45561 1.18260 1.87861 1.22265 0.97680 0.93964 0.82898 0.89202 1.23441 0.97387 0.95778 1.02694 1.21882 0.81789 1.00779 0.92332 1.44284 1.03965 1.14429 1.69460 1.19088 0.86453 0.96732 1.31924 0.90636 1.24760 0.96919 0.97832 1.01342 1.69798 1.19409 1.20989 1.47082 0.86004 0.81523 0.80623 0.77399 1.20612 1.21867 1.21789 1.21484 0.92542 0.88442 0.96968 0.91819 0.91484 0.92524 0.89864 0.90455 0.88526 0.88426 0.74307 0.87888 0.87904 0.74984 0.90377 0.88545 0.88542 0.92848 0.90349 0.87527 0.97255 0.93898 0.94438 0.96629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.10 0.88 5.92 -4.04 -0.02 0.85 16 3 N -0.60 -7.92 2.54 -164.02 -0.42 -8.34 16 4 C 0.50 7.10 6.84 -10.99 -0.08 7.02 16 5 O -0.50 -9.40 12.03 5.55 0.07 -9.34 16 6 C 0.10 1.07 4.71 -5.20 -0.02 1.04 16 7 N -0.71 -7.56 5.53 -61.47 -0.34 -7.89 16 8 C 0.51 5.27 7.90 -10.98 -0.09 5.18 16 9 O -0.54 -6.61 15.67 5.56 0.09 -6.52 16 10 C 0.10 0.88 6.15 -5.20 -0.03 0.85 16 11 N -0.72 -6.07 5.53 -61.48 -0.34 -6.41 16 12 C 0.51 4.77 7.94 -10.99 -0.09 4.68 16 13 C -0.17 -0.85 10.39 36.00 0.37 -0.47 16 14 O -0.55 -7.53 17.10 5.56 0.10 -7.44 16 15 C 0.13 2.28 3.43 -66.09 -0.23 2.06 16 16 H 0.09 1.36 7.86 -51.93 -0.41 0.95 16 17 C -0.15 -2.99 6.44 -24.47 -0.16 -3.15 16 18 C 0.16 3.91 5.89 -2.41 -0.01 3.90 16 19 N -0.60 -15.72 3.40 -169.94 -0.58 -16.29 16 20 C -0.21 -6.15 10.27 -15.06 -0.15 -6.31 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -27.58 10.09 55.49 0.56 -27.02 16 24 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 C 0.13 2.85 6.47 -3.07 -0.02 2.83 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 7.22 -51.93 -0.37 0.09 16 32 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 33 H 0.08 0.54 6.44 -51.93 -0.33 0.20 16 34 H 0.10 0.92 7.40 -51.93 -0.38 0.53 16 35 H 0.10 0.93 7.18 -51.93 -0.37 0.55 16 36 H 0.42 4.66 7.44 -40.82 -0.30 4.35 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.41 3.01 7.27 -40.82 -0.30 2.71 16 40 H 0.08 0.23 7.91 -51.93 -0.41 -0.18 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.66 6.03 -51.93 -0.31 1.35 16 45 H 0.11 3.03 5.87 -51.93 -0.30 2.72 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.04 0.86 6.07 -51.93 -0.32 0.54 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -36.95 394.90 -7.76 -44.71 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.58 Total: 3.84 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -0.24 Total: 17.03 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -1.11 Total: -65.95 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.25 Total: -23.29 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.95 -7.76 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715036335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.818 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds