Wall clock time and date at job start Sat Apr 11 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47497 * 2 1 4 4 C 1.34778 * 120.00180 * 89.99806 * 3 2 1 5 5 O 1.21287 * 119.99992 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.00115 * 359.97438 * 4 3 2 7 7 N 1.46493 * 109.47082 * 179.97438 * 6 4 3 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 6 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 6 11 11 N 1.46497 * 109.47115 * 180.02562 * 10 8 7 12 12 C 1.34774 * 120.00288 * 180.02562 * 11 10 8 13 13 C 1.50698 * 120.00338 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99761 * 359.97438 * 12 11 10 15 15 C 1.46509 * 120.00075 * 270.00098 * 3 2 1 16 16 H 1.08997 * 110.63508 * 359.29757 * 15 3 2 17 17 C 1.55160 * 110.72088 * 122.43724 * 15 3 2 18 18 C 1.55123 * 101.48197 * 153.73781 * 17 15 3 19 19 N 1.47425 * 104.94263 * 323.22054 * 18 17 15 20 20 C 1.36940 * 125.64970 * 204.04371 * 19 18 17 21 21 H 1.07993 * 120.00345 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99571 * 359.95638 * 20 19 18 23 23 N 1.31616 * 120.00548 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99811 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47381 * 120.00096 * 24 22 20 27 27 H 1.48497 * 109.47260 * 240.00182 * 24 22 20 28 28 C 1.47018 * 108.70308 * 24.00655 * 19 18 17 29 29 H 1.09008 * 109.46842 * 60.00162 * 1 2 3 30 30 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46917 * 300.00515 * 1 2 3 32 32 H 1.08999 * 109.47200 * 239.99816 * 2 1 3 33 33 H 1.08999 * 109.47073 * 119.99943 * 2 1 3 34 34 H 1.09007 * 109.46606 * 60.00104 * 6 4 3 35 35 H 1.09006 * 109.47204 * 300.00561 * 6 4 3 36 36 H 0.97000 * 120.00740 * 359.72841 * 7 6 4 37 37 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 38 38 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 39 39 H 0.97001 * 120.00220 * 359.97438 * 11 10 8 40 40 H 1.09000 * 109.47129 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.47061 * 119.99581 * 13 12 11 42 42 H 1.09000 * 109.47545 * 240.00203 * 13 12 11 43 43 H 1.08996 * 111.00261 * 271.94143 * 17 15 3 44 44 H 1.08998 * 111.00196 * 35.79356 * 17 15 3 45 45 H 1.09001 * 110.41434 * 204.29526 * 18 17 15 46 46 H 1.08997 * 110.29978 * 82.09168 * 18 17 15 47 47 H 0.97004 * 120.00351 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.88308 * 239.52217 * 28 19 18 49 49 H 1.09001 * 109.88378 * 118.35769 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2431 2.0165 1.1672 5 8 2.6470 3.1601 1.1671 6 6 1.9913 1.3064 2.4723 7 7 2.3094 2.2037 3.5857 8 6 2.1597 1.7801 4.8565 9 8 1.7571 0.6578 5.0781 10 6 2.4928 2.7011 6.0018 11 7 2.2479 2.0108 7.2706 12 6 2.4774 2.6444 8.4378 13 6 2.2250 1.9345 9.7429 14 8 2.8870 3.7859 8.4377 15 6 2.2627 2.0718 -1.2688 16 1 2.0440 1.4159 -2.1115 17 6 1.4242 3.3745 -1.3550 18 6 2.2830 4.2311 -2.3219 19 7 3.6796 3.9115 -1.9744 20 6 4.7635 4.7163 -2.2040 21 1 5.7502 4.3902 -1.9105 22 6 4.5937 5.9514 -2.8145 23 7 3.3912 6.3491 -3.1722 24 14 6.0723 7.0491 -3.1284 25 1 7.3014 6.3768 -2.6358 26 1 6.1979 7.3057 -4.5856 27 1 5.8929 8.3378 -2.4126 28 6 3.7160 2.5858 -1.3397 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.6212 0.4186 2.5302 35 1 0.9432 1.0126 2.5298 36 1 2.6318 3.1012 3.4085 37 1 3.5421 2.9900 5.9425 38 1 1.8668 3.5917 5.9457 39 1 1.9200 1.0979 7.2707 40 1 1.8632 0.9257 9.5438 41 1 3.1526 1.8814 10.3129 42 1 1.4771 2.4825 10.3160 43 1 0.4378 3.1771 -1.7746 44 1 1.3433 3.8523 -0.3787 45 1 2.0867 5.2919 -2.1664 46 1 2.0767 3.9553 -3.3561 47 1 3.2727 7.2120 -3.5991 48 1 4.1299 2.6673 -0.3346 49 1 4.3213 1.9048 -1.9380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715036335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:53 Heat of formation + Delta-G solvation = -96.732469 kcal Electronic energy + Delta-G solvation = -30150.747927 eV Core-core repulsion = 25920.050690 eV Total energy + Delta-G solvation = -4230.697237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73731 -41.06513 -40.10577 -38.56340 -36.85339 -35.83364 -35.43632 -34.29281 -31.72297 -31.53658 -30.80863 -29.96282 -28.55557 -27.19436 -26.17356 -24.22782 -22.56822 -22.08590 -21.70687 -21.67475 -20.13144 -19.01684 -18.75605 -18.01754 -17.80391 -17.28750 -17.22034 -16.88099 -16.73404 -16.55809 -16.08515 -15.80796 -15.72956 -15.23019 -14.81315 -14.70268 -14.45673 -14.37664 -14.30687 -14.03761 -13.90356 -13.62155 -13.42876 -13.29137 -13.10881 -12.99901 -12.91864 -12.77327 -12.71052 -12.34215 -12.14417 -12.03388 -11.99549 -11.81489 -11.37449 -11.29068 -11.10563 -10.75141 -10.63001 -10.40721 -10.23750 -9.65366 -8.85310 -7.77053 -5.20215 1.33725 1.43354 1.45461 1.50257 1.54235 1.55604 1.58830 2.02729 2.46210 2.50374 3.29514 3.34733 3.50759 3.75536 3.91092 3.93972 4.01249 4.10235 4.18149 4.26872 4.27074 4.31119 4.33296 4.45704 4.53235 4.59300 4.68402 4.69689 4.74150 4.86141 4.94923 5.03570 5.04359 5.05299 5.11193 5.15244 5.24600 5.43280 5.44042 5.63027 5.73738 5.81040 6.24569 6.31251 6.39473 6.47315 6.90191 7.11140 7.13625 7.16585 7.79392 8.42651 9.24826 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.002579 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.277584 B =10853.609363 C =12931.594275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.497 3.503 5 O -0.556 6.556 6 C 0.110 3.890 7 N -0.712 5.712 8 C 0.523 3.477 9 O -0.560 6.560 10 C 0.098 3.902 11 N -0.712 5.712 12 C 0.507 3.493 13 C -0.162 4.162 14 O -0.599 6.599 15 C 0.153 3.847 16 H 0.119 0.881 17 C -0.137 4.137 18 C 0.160 3.840 19 N -0.618 5.618 20 C -0.232 4.232 21 H 0.074 0.926 22 C -0.070 4.070 23 N -0.949 5.949 24 Si 0.980 3.020 25 H -0.269 1.269 26 H -0.288 1.288 27 H -0.293 1.293 28 C 0.129 3.871 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.420 0.580 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.065 0.935 46 H -0.006 1.006 47 H 0.246 0.754 48 H 0.023 0.977 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -19.433 18.247 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.285 3.715 5 O -0.434 6.434 6 C -0.016 4.016 7 N -0.366 5.366 8 C 0.310 3.690 9 O -0.439 6.439 10 C -0.030 4.030 11 N -0.368 5.368 12 C 0.296 3.704 13 C -0.221 4.221 14 O -0.480 6.480 15 C 0.049 3.951 16 H 0.137 0.863 17 C -0.176 4.176 18 C 0.034 3.966 19 N -0.344 5.344 20 C -0.361 4.361 21 H 0.092 0.908 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.193 1.193 26 H -0.215 1.215 27 H -0.220 1.220 28 C 0.003 3.997 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.253 0.747 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.259 0.741 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.012 0.988 47 H 0.056 0.944 48 H 0.041 0.959 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.153 -18.701 18.287 27.397 hybrid contribution 0.820 1.171 -0.853 1.665 sum -7.333 -17.531 17.433 25.788 Atomic orbital electron populations 1.22204 0.94753 1.03595 1.02092 1.22019 0.95361 0.79794 1.05515 1.47984 1.64982 1.15440 1.04268 1.20937 0.77525 0.86654 0.86428 1.90833 1.45904 1.19347 1.87295 1.21231 1.04565 0.93232 0.82607 1.45708 1.67273 1.18946 1.04721 1.20478 0.76933 0.87729 0.83904 1.90678 1.47450 1.21010 1.84763 1.21030 1.04322 0.95221 0.82429 1.45887 1.67780 1.18949 1.04170 1.21663 0.75591 0.86224 0.86911 1.21869 1.05759 1.02380 0.92071 1.90736 1.48057 1.20619 1.88572 1.21941 0.93703 0.93615 0.85812 0.86318 1.23182 0.98152 0.96066 1.00215 1.21638 0.82528 0.99526 0.92890 1.44571 1.03941 1.16185 1.69684 1.19416 0.87362 0.97572 1.31788 0.90791 1.25615 0.99705 0.99215 1.01641 1.70065 1.21178 1.21027 1.47671 0.84987 0.78743 0.78371 0.77100 1.19331 1.21483 1.22011 1.21631 0.95933 0.86584 0.95541 0.93001 0.89003 0.92918 0.88317 0.87947 0.86619 0.86575 0.74667 0.87833 0.87756 0.74084 0.87809 0.87694 0.87660 0.89918 0.92215 0.91673 0.98804 0.94412 0.95935 0.96033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 71.98 0.74 -1.25 16 2 C 0.09 1.27 5.92 86.38 0.51 1.78 16 3 N -0.59 -14.34 2.54 -791.24 -2.01 -16.35 16 4 C 0.50 13.48 6.84 87.66 0.60 14.08 16 5 O -0.56 -21.10 12.03 -3.05 -0.04 -21.14 16 6 C 0.11 2.09 4.71 85.63 0.40 2.49 16 7 N -0.71 -14.42 5.53 -466.78 -2.58 -17.00 16 8 C 0.52 10.01 7.90 87.65 0.69 10.70 16 9 O -0.56 -12.34 15.67 -3.04 -0.05 -12.39 16 10 C 0.10 1.70 6.15 85.63 0.53 2.23 16 11 N -0.71 -11.21 5.53 -466.81 -2.58 -13.79 16 12 C 0.51 9.03 7.94 87.66 0.70 9.72 16 13 C -0.16 -1.29 10.39 71.24 0.74 -0.55 16 14 O -0.60 -16.65 17.10 -3.03 -0.05 -16.70 16 15 C 0.15 4.97 3.43 46.18 0.16 5.13 16 16 H 0.12 3.21 7.86 -2.39 -0.02 3.20 16 17 C -0.14 -5.31 6.44 32.06 0.21 -5.10 16 18 C 0.16 8.20 5.89 86.93 0.51 8.72 16 19 N -0.62 -33.51 3.40 -691.58 -2.35 -35.86 16 20 C -0.23 -13.76 10.27 84.03 0.86 -12.90 16 21 H 0.07 4.27 7.83 -2.91 -0.02 4.24 16 22 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 23 N -0.95 -58.80 10.09 21.65 0.22 -58.58 16 24 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 28 C 0.13 5.57 6.47 86.73 0.56 6.13 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 7.22 -2.38 -0.02 0.66 16 32 H 0.10 1.10 7.94 -2.39 -0.02 1.08 16 33 H 0.10 0.93 6.44 -2.39 -0.02 0.91 16 34 H 0.12 1.80 7.40 -2.38 -0.02 1.78 16 35 H 0.12 1.82 7.18 -2.38 -0.02 1.81 16 36 H 0.42 9.29 7.44 -92.71 -0.69 8.60 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.42 5.35 7.27 -92.71 -0.67 4.68 16 40 H 0.10 0.29 7.91 -2.39 -0.02 0.27 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.06 2.57 6.03 -2.39 -0.01 2.56 16 45 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 46 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.02 1.05 6.07 -2.38 -0.01 1.03 16 49 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -84.53 394.90 -0.11 -84.65 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.38 Total: 19.84 kcal Atomic # 6 Polarization: 29.84 SS G_CDS: 7.67 Total: 37.51 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -9.30 Total: -141.57 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.14 Total: -50.23 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -84.53 -0.11 -84.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715036335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.087 kcal (2) G-P(sol) polarization free energy of solvation -84.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds