Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47024 * 110.99689 * 2 1 4 4 C 1.53093 * 109.25649 * 182.39138 * 3 2 1 5 5 O 1.43019 * 109.26085 * 303.15463 * 4 3 2 6 6 C 1.43009 * 113.74000 * 58.66712 * 5 4 3 7 7 H 1.09003 * 109.50737 * 61.31338 * 6 5 4 8 8 C 1.50703 * 109.50783 * 181.39623 * 6 5 4 9 9 O 1.21279 * 120.00097 * 5.00490 * 8 6 5 10 10 N 1.34771 * 120.00069 * 185.00026 * 8 6 5 11 11 C 1.46501 * 120.00163 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.47227 * 180.02562 * 11 10 8 13 13 C 1.30993 * 120.00095 * 127.09597 * 12 11 10 14 14 C 1.50705 * 120.00276 * 7.83583 * 13 12 11 15 15 N 1.46899 * 109.47121 * 127.04989 * 14 13 12 16 16 C 1.46900 * 110.99495 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46684 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00243 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99904 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99723 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00320 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99702 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00120 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47267 * 89.99927 * 24 22 20 26 26 H 1.48499 * 109.47305 * 209.99881 * 24 22 20 27 27 H 1.48501 * 109.47158 * 330.00014 * 24 22 20 28 28 C 1.47014 * 111.00242 * 123.63276 * 2 1 3 29 29 H 1.09003 * 109.46868 * 63.95267 * 1 2 3 30 30 H 1.09004 * 109.46827 * 183.95190 * 1 2 3 31 31 H 1.08997 * 109.47169 * 303.95428 * 1 2 3 32 32 H 1.08995 * 109.50372 * 62.46001 * 3 2 1 33 33 H 1.08994 * 109.50676 * 302.32254 * 3 2 1 34 34 H 1.09000 * 109.51320 * 183.21657 * 4 3 2 35 35 H 1.09009 * 109.50898 * 63.08540 * 4 3 2 36 36 H 0.97006 * 120.00055 * 0.02562 * 10 8 6 37 37 H 1.08994 * 109.47226 * 59.99884 * 11 10 8 38 38 H 1.08999 * 109.46767 * 300.00083 * 11 10 8 39 39 H 1.08003 * 119.99996 * 307.36659 * 12 11 10 40 40 H 1.08002 * 120.00604 * 187.84114 * 13 12 11 41 41 H 1.08997 * 109.47025 * 247.05263 * 14 13 12 42 42 H 1.09000 * 109.46789 * 7.04915 * 14 13 12 43 43 H 1.00900 * 110.99941 * 56.05158 * 15 14 13 44 44 H 1.09003 * 109.47591 * 299.99576 * 16 15 14 45 45 H 1.09002 * 109.47159 * 60.00467 * 16 15 14 46 46 H 0.97006 * 119.99590 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99756 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.50253 * 57.67583 * 28 2 1 49 49 H 1.09000 * 109.50523 * 297.54662 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 -0.0603 5 8 4.0175 0.5575 1.0403 6 6 3.5250 -0.7848 1.0709 7 1 3.8392 -1.3085 0.1681 8 6 4.0742 -1.4948 2.2814 9 8 4.7403 -0.8857 3.0915 10 7 3.8252 -2.8067 2.4638 11 6 4.3586 -3.4969 3.6409 12 6 3.9402 -4.9442 3.6071 13 6 4.8405 -5.8891 3.7197 14 6 6.2656 -5.5355 4.0590 15 7 6.7023 -6.3224 5.2201 16 6 8.0900 -6.0028 5.5806 17 6 8.5016 -6.8269 6.7734 18 8 7.7160 -7.6036 7.2741 19 7 9.7423 -6.7002 7.2843 20 6 10.1168 -7.4502 8.3691 21 1 9.4175 -8.1424 8.8144 22 6 11.3961 -7.3199 8.8955 23 7 12.2472 -6.4780 8.3533 24 14 11.9062 -8.3414 10.3739 25 1 12.4963 -9.6228 9.9104 26 1 12.9118 -7.5926 11.1698 27 1 10.7161 -8.6208 11.2170 28 6 1.9959 -0.7602 1.1427 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3633 0.5740 0.8524 32 1 1.6827 1.8826 0.9110 33 1 1.6134 1.9092 -0.8682 34 1 3.9222 2.3400 -0.0029 35 1 3.8385 0.8645 -0.9965 36 1 3.2927 -3.2940 1.8158 37 1 3.9705 -3.0271 4.5445 38 1 5.4468 -3.4334 3.6370 39 1 2.8986 -5.2025 3.4856 40 1 4.5615 -6.9216 3.5695 41 1 6.9078 -5.7581 3.2069 42 1 6.3301 -4.4733 4.2948 43 1 6.5910 -7.3106 5.0496 44 1 8.7453 -6.2284 4.7392 45 1 8.1668 -4.9439 5.8272 46 1 10.3705 -6.0787 6.8841 47 1 13.1401 -6.3868 8.7211 48 1 1.6134 -1.7803 1.1086 49 1 1.6828 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715800577.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = -76.380397 kcal Electronic energy + Delta-G solvation = -28327.341540 eV Core-core repulsion = 24097.526835 eV Total energy + Delta-G solvation = -4229.814705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76266 -39.17332 -38.32106 -37.02857 -36.20971 -35.04858 -33.89595 -33.07611 -31.87297 -31.18038 -29.43678 -28.00698 -26.53531 -25.07559 -24.70040 -24.51613 -23.14451 -21.41150 -20.72757 -19.58140 -18.97601 -17.90010 -17.58735 -17.22390 -16.58573 -16.38087 -16.05494 -15.92159 -15.60002 -15.41912 -15.28466 -14.97756 -14.62378 -14.45376 -14.32052 -14.12563 -13.67327 -13.63305 -13.49788 -12.99136 -12.92779 -12.77456 -12.56992 -12.41246 -12.30562 -11.98175 -11.84493 -11.52522 -11.47349 -11.30834 -11.02153 -10.85372 -10.37305 -10.24825 -10.19683 -10.11722 -9.61289 -9.48759 -9.17215 -9.08662 -8.44389 -8.03236 -7.93482 -6.39232 -3.80125 1.75103 2.24525 2.61392 3.15160 3.19817 3.28418 3.34653 3.60986 3.93172 4.15048 4.17147 4.28969 4.33647 4.42922 4.46947 4.54682 4.62410 4.73533 4.81767 4.85591 4.90952 4.95187 5.11214 5.12791 5.18361 5.20745 5.27372 5.27780 5.33750 5.35148 5.53623 5.60898 5.71341 5.82541 6.00004 6.04527 6.20993 6.24495 6.27976 6.34472 6.53419 6.57472 7.14570 7.18437 7.57547 7.64580 7.89232 8.08577 8.63668 9.20125 9.56686 10.08076 10.78486 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.001458 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.956993 B =19198.788483 C =20009.389742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.013 3.987 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.079 3.921 7 H 0.094 0.906 8 C 0.518 3.482 9 O -0.512 6.512 10 N -0.722 5.722 11 C 0.141 3.859 12 C -0.184 4.184 13 C -0.108 4.108 14 C 0.068 3.932 15 N -0.663 5.663 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.028 3.972 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.393 0.607 47 H 0.271 0.729 48 H 0.093 0.907 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.320 13.472 -22.891 34.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.272 6.272 6 C 0.017 3.983 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.385 6.385 10 N -0.376 5.376 11 C 0.019 3.981 12 C -0.204 4.204 13 C -0.128 4.128 14 C -0.060 4.060 15 N -0.295 5.295 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.101 4.101 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.169 0.831 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.114 13.743 -21.703 33.896 hybrid contribution 0.381 -0.485 -0.037 0.618 sum -21.733 13.259 -21.740 33.478 Atomic orbital electron populations 1.22410 0.86216 1.02453 1.01353 1.62232 1.08730 1.13853 1.41738 1.22883 0.96709 0.89695 1.02236 1.22775 0.92043 0.96800 0.89883 1.88151 1.69196 1.21544 1.48351 1.21923 0.92960 0.85949 0.97482 0.88836 1.20047 0.80960 0.82059 0.86809 1.90775 1.37597 1.65732 1.44410 1.45895 1.55684 1.09280 1.26754 1.20530 0.99811 0.89811 0.87915 1.22635 0.99264 0.93325 1.05133 1.22858 0.94720 0.99393 0.95797 1.21298 0.92936 0.99703 0.92088 1.60094 1.21582 1.11569 1.36289 1.21701 0.88707 1.00894 0.97005 1.19784 0.83418 0.87024 0.87135 1.90518 1.52016 1.40929 1.63324 1.41863 1.11347 1.38165 1.28615 1.19710 0.97727 1.19358 1.06168 0.87907 1.25268 0.95717 0.97552 0.99402 1.69617 1.06816 1.36060 1.41768 0.85849 0.78449 0.79179 0.80754 1.20447 1.20922 1.19404 1.22696 0.93984 1.00218 0.93162 0.90792 0.90912 0.95180 0.93474 0.89143 0.87610 0.91844 0.76520 0.90498 0.89788 0.86375 0.86496 0.94415 0.89624 0.83120 0.93768 0.89456 0.77422 0.91872 0.88915 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.63 60.07 0.58 0.68 16 2 N -0.54 -3.20 4.99 -242.59 -1.21 -4.41 16 3 C 0.01 0.07 5.66 -3.71 -0.02 0.05 16 4 C 0.06 0.40 7.01 37.21 0.26 0.67 16 5 O -0.35 -3.74 10.01 -55.06 -0.55 -4.29 16 6 C 0.08 0.66 3.22 -27.83 -0.09 0.57 16 7 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.52 5.58 7.18 -10.99 -0.08 5.51 16 9 O -0.51 -8.13 16.51 -14.27 -0.24 -8.37 16 10 N -0.72 -5.75 5.51 -61.47 -0.34 -6.09 16 11 C 0.14 1.38 5.76 -5.19 -0.03 1.35 16 12 C -0.18 -1.56 9.63 -36.02 -0.35 -1.91 16 13 C -0.11 -1.08 9.77 -36.02 -0.35 -1.43 16 14 C 0.07 0.84 5.77 -4.97 -0.03 0.81 16 15 N -0.66 -10.81 6.11 -116.33 -0.71 -11.53 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.62 7.82 -10.98 -0.09 10.54 16 18 O -0.58 -16.10 15.78 5.55 0.09 -16.01 16 19 N -0.56 -14.56 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.03 0.18 4.89 -3.71 -0.02 0.16 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 36 H 0.40 1.89 8.35 -40.82 -0.34 1.55 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.94 5.31 -51.93 -0.28 0.67 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 1.07 5.31 -51.93 -0.28 0.79 16 43 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.09 0.40 7.99 -51.93 -0.41 -0.02 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -36.11 406.43 -9.48 -45.60 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.81 Total: 11.73 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.48 Total: 9.71 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -1.59 Total: -60.78 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.70 Total: -28.67 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.11 -9.48 -45.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715800577.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.784 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds